The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
45
|
sequence length |
217
|
structure length |
171
|
Chain Sequence |
VSIDYRHEMQDGHKDRLLISHRFANGFGLSSEVKWAQSVSNGTEVVASYVYKFNSVFSIEPGFSLESGSSNNNYRPYLRGRANVTDDLSVALRYRPYFKRKGYTLTGNIDYTFLKDYTIGYELEYKKGTSYDITHNVKLSYKWDKNWKPYVEVGNVSRQTRYRVGVQYSFH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the oligogalacturonate-specific KdgM porin.
pubmed doi rcsb |
| molecule tags |
Outer membrane protein
|
| source organism |
Dickeya dadantii
|
| molecule keywords |
Oligogalacturonate-specific porin KdgM
|
| total genus |
45
|
| structure length |
171
|
| sequence length |
217
|
| ec nomenclature | |
| pdb deposition date | 2014-03-05 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Porin | monomeric porin ompg |
#chains in the Genus database with same CATH superfamily 4PR7 A; 2F1C X; 2IWW A; 2JQY A; 2WVP A; 2X9K A; 4FQE A; 2WJQ A; 2WJR A; 4CTD A; 2IWV A; #chains in the Genus database with same CATH topology 3AAE A; 3PF1 A; 1GFN A; 2XG6 A; 3K19 A; 2R8A A; 4PR7 A; 2JQY A; 3RBH A; 4G76 A; 3WU2 O; 4FZM A; 4O4U A; 5E79 O; 4FMS A; 2Y2X A; 3PRN A; 2F1T A; 3AA7 B; 3HW9 A; 4LSH A; 3AA6 A; 1IZN B; 4RJX A; 3PGU A; 3A2S X; 5H2F O; 3SY7 A; 3EMN X; 5AFU K; 4N58 A; 2WJR A; 3AAA A; 2QTK A; 3VZW X; 2O4V A; 1MM4 A; 3DWO X; 3T0S A; 2PRN A; 3VE1 A; 1BT9 A; 2MHL A; 4U9C A; 2KDY A; 4LSF A; 5B5E O; 3AA0 A; 4GCS A; 2K0L A; 4JCH A; 3UAQ A; 2R89 A; 6PRN A; 5G39 A; 2KXP A; 8PRN A; 2Y0L A; 5ADX K; 3SYS A; 2KC0 A; 3LK2 A; 4K3B A; 4LSI A; 3VY8 X; 2POR A; 2XE3 A; 2WJQ A; 4FT6 A; 4RLC A; 4FQE A; 4FSP A; 5EE2 A; 1ZHY A; 3FYX A; 1GFP A; 2LHF A; 4C4V A; 4UB8 O; 3PGR A; 3O0E A; 4G75 A; 1T1L A; 1MM5 A; 5TIS O; 4CTD A; 5JDP A; 1THQ A; 2LFU A; 4UB6 O; 2ERV A; 3PQU A; 3HOL A; 2Y7S A; 3JTY A; 1OSM A; 3NSG A; 4KRA A; 3A0H O; 3NJT A; 4KR4 A; 4AFK A; 1G90 A; 1ZHX A; 3LK4 1; 1ZHZ A; 2Y0K A; 3UU2 A; 4AYE C; 1YS5 A; 4RL9 A; 3DZM A; 3AA1 B; 3AA7 A; 3A0B O; 3POU A; 5G38 A; 4D64 A; 1Q9F A; 1IZN A; 4FUV A; 3VY9 X; 2MNH A; 4O4X A; 3SZV A; 3VZU X; 4D65 A; 3BS0 A; 4O49 A; 5G3A A; 1HXT A; 2YPV A; 1MPF A; 2X27 X; 5B66 O; 4FRX A; 1QJ9 A; 4AKM A; 3T24 A; 4AYM C; 4AYD C; 4E1S A; 5AFU L; 4GF4 A; 7PRN A; 4AYN A; 2GE4 A; 4FZL A; 4FRT A; 5IYU A; 3GP6 A; 2M06 A; 1ZHT A; 3DA3 A; 1BXW A; 2ODJ A; 2WVP A; 4FZN A; 4IL6 O; 1S5L O; 5KAI O; 3UPG A; 1QJP A; 2XE1 A; 5KAF O; 4AKR B; 4C00 A; 5ADX L; 4E1T A; 3WI5 A; 2XMX A; 2XTR A; 3SZD A; 4D5U A; 3VZT X; 4B61 A; 2AXT O; 4PJ0 O; 5D5D A; 1E54 A; 2ZFG A; 5PRN A; 4GHB A; 4AZL A; 1PHO A; 1BH3 A; 1PRN A; 3TZG A; 2N2M A; 2W81 C; 1ZHW A; 3JCU O; 2IWW A; 1Q9G A; 2R88 A; 3LK3 B; 2M07 A; 1GFM A; 1T16 A; 2KZ7 B; 2YNK A; 3C5O A; 3AAE B; 4N75 A; 5DL5 A; 1P4T A; 2IWV A; 1GFQ A; 2ZLD A; 3DWN A; 4LSE A; 4F4B A; 4Z3T A; 3T20 A; 1GFO A; 3AA1 A; 2JMM A; 4O3Y A; 3QRC A; 1HXX A; 2FGR A; 2XE5 A; 5FVN A; 5GTI O; 5T5F A; 2Y0H A; 4O3X B; 2F1V A; 3AA6 B; 4GCQ A; 5DL7 A; 2XTQ A; 3BRY A; 5GV0 A; 4AUI A; 3POQ A; 2X9K A; 3AAA B; 3V8U A; 3PGS A; 3VE2 A; 2N2L A; 2R4L A; 4FES A; 4XNL A; 2J4U P; 4N59 A; 4O3Z A; 4JFB A; 4RLB A; 2XE2 A; 4BUM X; 2R4O A; 4FOZ A; 4O3W A; 3HWB A; 3AA0 B; 3LK4 2; 1H6S 1; 1HXU A; 2K4T A; 3PQS A; 3POR A; 3BRZ A; 3KZI O; 3QRA A; 2KXP B; 2R4P A; 3HOE A; 3POX A; 4N74 A; 5G26 A; 3LK2 B; 4PUX A; 4AKR A; 4AYI D; 4C69 X; 3G7G A; 3WI4 A; 1ORM A; 2R4N A; 5GTH O; 5DL6 A; 2J1N A; 4K3C A; 3DA4 A; 4GCP A; 1OPF A; 3SYB A; 3SY9 A; 4C4V B; 2OMF A; 4FSO A; 4KR8 A; 4RJW A; 2F1C X; 5DL8 A; 3KVD D; 2W80 C; 3LK3 A; 4XNK A; 2FGQ X; 2KZ7 A; 1QJ8 A; 4QQ1 A; #chains in the Genus database with same CATH homology 4PR7 A; 2F1C X; 2IWW A; 2JQY A; 2WVP A; 2X9K A; 4FQE A; 2WJQ A; 2WJR A; 4CTD A; 2IWV A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
