4PUX | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	157
structure length	157
Chain Sequence	QYNPPPIQLEPLAKFSVDLNAPVWELGTTSDAGKRRIIPITGGTFEGKSLKGRILNNGADWQIVDSKGLAIIDTRYLLETDDGALIYLQTKGYRHGSAETLKQLAQGKDVDPKNYYFKITMQFETSSPKYSWLNQTVAVGSAMRLGKAVIYDAYTLK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Acinetobacter baumannii
publication title	Crystal structure of a hypothetical protein (ABAYE2633) from Acinetobacter baumannii AYE at 1.43 A resolution rcsb
molecule keywords	Uncharacterized protein
total genus	32
structure length	157
sequence length	157
ec nomenclature
pdb deposition date	2014-03-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF11578	DUF3237	Protein of unknown function (DUF3237)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.20	Mainly Beta	Beta Barrel	Porin	Porin	4puxA00

1MM5A 2K0LA 2N2LA 3QRCA 2F1VA 3QRAA 2F1TA 2ERVA 1P4TA 2M07A 2MHLA 2JMMA 1G90A 4RLCA 3G7GA 1QJPA 1BXWA 1Q9GA 2GE4A 1QJ8A 2MNHA 3C5OA 2M06A 1THQA 2N2MA 4PUXA 1Q9FA 1QJ9A 3GP6A 1MM4A 2X27X 2LHFA 1ORMA
chains in the Genus database with same CATH superfamily

2XE1A 4FQEA 3AA1A 4KRAA 2JQYA 4AKRB 2N2LA 4AYDC 3HOEA 4BUMX 2Y0LA 2XE2A 5AFUL 3T24A 5EE2A 5T5FA 3DA4A 4O49A 4XNLA 2Y2XA 3KZIO 2JMMA 4XNKA 1G90A 3A0HO 4FRXA 1ZHWA 4O3WA 4Z3TA 5GTHO 3UPGA 1E54A 4FZMA 2O4VA 1HXUA 4KR8A 3SZDA 5AFUK 4JCHA 2XTQA 2M06A 3DA3A 4PUXA 1GFQA 3VZUX 5ADXL 4GCPA 3T20A 3HW9A 4GF4A 3PQUA 3V8UA 3BRYA 4E1SA 3AA7A 2W80C 1OSMA 2KZ7A 3PGSA 1THQA 3BRZA 4JFBA 4K3CA 4F4BA 3JTYA 4RL9A 1OPFA 1MPFA 1ZHXA 4FMSA 3VY8X 2FGQX 2K0LA 1IZNB 3DWNA 3EMNX 1ZHTA 4FRTA 4U9CA 5GTIO 2ODJA 2WVPA 1HXXA 2KXPA 2F1VA 1GFNA 3QRAA 4FOZA 4PJ0O 4AYMC 1T16A 3PQSA 5G38A 3PRNA 3BS0A 4UB8O 3AA0B 1HXTA 1ZHYA 3AA1B 3DWOX 3LK2A 4LSIA 3LK41 2PORA 4LSEA 1GFPA 2R4LA 3T0SA 4AKMA 5D5DA 1Q9GA 5G39A 2W81C 2XG6A 3AA6A 2Y7SA 4E1TA 4O4UA 3C5OA 4G75A 2KC0A 3POUA 4AKRA 1H6S1 1Q9FA 3POQA 4C4VA 2R89A 2X9KA 3PF1A 4G76A 4C00A 3WU2O 2X27X 3O0EA 4N58A 4PR7A 4D64A 3AAEA 2K4TA 5DL5A 4AUIA 4CTDA 4FESA 3TZGA 4AFKA 2Y0KA 1ORMA 5DL6A 1BT9A 3AAAB 2R8AA 2YNKA 3DZMA 6PRNA 3HOLA 4UB6O 5B5EO 4O3ZA 5ADXK 3UAQA 3LK3A 5G26A 3SYBA 5H2FO 3JCUO 3A0BO 2F1TA 2XE5A 3HWBA 2R4PA 2M07A 3AA7B 4LSFA 2XE3A 2KZ7B 3K19A 4RJXA 5DL8A 3VE2A 3VZTX 1PHOA 4KR4A 2QTKA 4D65A 5KAFO 2AXTO 3LK42 4FSOA 5E79O 3PGUA 1QJPA 4AYNA 1BXWA 2GE4A 2FGRA 4C69X 1BH3A 7PRNA 2N2MA 5TISO 2YPVA 4GCQA 4FZLA 8PRNA 4QQ1A 2R4OA 3NJTA 2R88A 1PRNA 2XTRA 4RJWA 3LK2B 2J4UP 4AYEC 3SY9A 4IL6O 2LHFA 5JDPA 2WJRA 3AA6B 3PORA 3SZVA 4GCSA 2WJQA 1T1LA 5B66O 3VZWX 1S5LO 3KVDD 3QRCA 3VE1A 4C4VB 5KAIO 2ZLDA 2IWWA 2ERVA 1P4TA 3NSGA 4O4XA 4O3XB 4O3YA 3AAEB 3UU2A 2MHLA 4K3BA 2LFUA 2XMXA 4RLCA 2IWVA 4D5UA 3RBHA 3SYSA 4FSPA 3A2SX 1GFMA 3PGRA 3G7GA 4N74A 4RLBA 4N59A 5G3AA 3SY7A 4AZLA 2F1CX 5GV0A 4B61A 3LK3B 2KDYA 3AAAA 1QJ8A 2MNHA 2OMFA 2KXPB 2ZFGA 2PRNA 5FVNA 4GHBA 3WI4A 2J1NA 1ZHZA 1QJ9A 1IZNA 2Y0HA 3FYXA 3GP6A 3POXA 4FT6A 5PRNA 4LSHA 1MM4A 4FUVA 2R4NA 3WI5A 1GFOA 1YS5A 5IYUA 4FZNA 4AYID 3VY9X 1MM5A 5DL7A 3AA0A 4N75A
chains in the Genus database with same CATH topology

2XE1A 4KRAA 3AA1A 4AKRB 2N2LA 4AYDC 3HOEA 4BUMX 2Y0LA 2XE2A 5AFUL 3T24A 5EE2A 5T5FA 3DA4A 4O49A 4XNLA 2Y2XA 2JMMA 4XNKA 1G90A 4FRXA 1ZHWA 4O3WA 4Z3TA 3UPGA 1E54A 4FZMA 2O4VA 1HXUA 4KR8A 3SZDA 5AFUK 4JCHA 2XTQA 2M06A 3DA3A 4PUXA 1GFQA 5ADXL 3T20A 4GCPA 3HW9A 4GF4A 3PQUA 3V8UA 4E1SA 3AA7A 2W80C 1OSMA 2KZ7A 1THQA 4JFBA 4F4BA 3JTYA 4RL9A 1OPFA 1MPFA 1ZHXA 4FMSA 3VY8X 2FGQX 2K0LA 1IZNB 3EMNX 1ZHTA 4FRTA 4U9CA 2ODJA 1HXXA 2KXPA 2F1VA 1GFNA 3QRAA 4FOZA 4AYMC 3PQSA 3PRNA 3AA0B 1HXTA 1ZHYA 3AA1B 3LK2A 4LSIA 3LK41 2PORA 4LSEA 1GFPA 3T0SA 4AKMA 5D5DA 1Q9GA 2W81C 2XG6A 3AA6A 2Y7SA 4E1TA 4O4UA 3C5OA 4G75A 2KC0A 3POUA 4AKRA 1H6S1 1Q9FA 3POQA 4G76A 2X27X 3O0EA 4N58A 4D64A 3AAEA 2K4TA 5DL5A 4AUIA 4FESA 3TZGA 4AFKA 2Y0KA 1ORMA 5DL6A 1BT9A 3AAAB 2YNKA 6PRNA 3HOLA 4O3ZA 5ADXK 3UAQA 3LK3A 5G26A 3SYBA 2F1TA 2XE5A 3HWBA 3AA7B 2M07A 4LSFA 4RJXA 2XE3A 2KZ7B 3K19A 5DL8A 3VE2A 3VZUX 3VZTX 1PHOA 4KR4A 2QTKA 4D65A 3LK42 4FSOA 1QJPA 4AYNA 1BXWA 2GE4A 2FGRA 4C69X 1BH3A 7PRNA 2N2MA 2YPVA 4GCQA 4FZLA 8PRNA 4QQ1A 1PRNA 2XTRA 4RJWA 3LK2B 2J4UP 4AYEC 3SY9A 2LHFA 5JDPA 3AA6B 3PORA 3SZVA 4GCSA 3VZWX 3KVDD 3QRCA 3VE1A 2ZLDA 2ERVA 1P4TA 3NSGA 4O4XA 4O3XB 4O3YA 3AAEB 3UU2A 2MHLA 2LFUA 2XMXA 4RLCA 4D5UA 3RBHA 3SYSA 4FSPA 3A2SX 1GFMA 4RLBA 3G7GA 4AZLA 5GV0A 4N59A 3SY7A 4B61A 3LK3B 2KDYA 3AAAA 1QJ8A 2MNHA 2OMFA 2KXPB 2ZFGA 2PRNA 5FVNA 4GHBA 3WI4A 2J1NA 1ZHZA 1QJ9A 1IZNA 2Y0HA 3FYXA 3GP6A 3POXA 4FT6A 5PRNA 4LSHA 1MM4A 4FUVA 3WI5A 1GFOA 1YS5A 5IYUA 4FZNA 4AYID 3VY9X 1MM5A 5DL7A 3AA0A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1MM5 A;  2K0L A;  2N2L A;  3QRC A;  2F1V A;  3QRA A;  2F1T A;  2ERV A;  1P4T A;  2M07 A;  2MHL A;  2JMM A;  1G90 A;  4RLC A;  3G7G A;  1QJP A;  1BXW A;  1Q9G A;  2GE4 A;  1QJ8 A;  2MNH A;  3C5O A;  2M06 A;  1THQ A;  2N2M A;  4PUX A;  1Q9F A;  1QJ9 A;  3GP6 A;  1MM4 A;  2X27 X;  2LHF A;  1ORM A; 
#chains in the Genus database with same CATH topology
 2XE1 A;  4FQE A;  3AA1 A;  4KRA A;  2JQY A;  4AKR B;  2N2L A;  4AYD C;  3HOE A;  4BUM X;  2Y0L A;  2XE2 A;  5AFU L;  3T24 A;  5EE2 A;  5T5F A;  3DA4 A;  4O49 A;  4XNL A;  2Y2X A;  3KZI O;  2JMM A;  4XNK A;  1G90 A;  3A0H O;  4FRX A;  1ZHW A;  4O3W A;  4Z3T A;  5GTH O;  3UPG A;  1E54 A;  4FZM A;  2O4V A;  1HXU A;  4KR8 A;  3SZD A;  5AFU K;  4JCH A;  2XTQ A;  2M06 A;  3DA3 A;  4PUX A;  1GFQ A;  3VZU X;  5ADX L;  4GCP A;  3T20 A;  3HW9 A;  4GF4 A;  3PQU A;  3V8U A;  3BRY A;  4E1S A;  3AA7 A;  2W80 C;  1OSM A;  2KZ7 A;  3PGS A;  1THQ A;  3BRZ A;  4JFB A;  4K3C A;  4F4B A;  3JTY A;  4RL9 A;  1OPF A;  1MPF A;  1ZHX A;  4FMS A;  3VY8 X;  2FGQ X;  2K0L A;  1IZN B;  3DWN A;  3EMN X;  1ZHT A;  4FRT A;  4U9C A;  5GTI O;  2ODJ A;  2WVP A;  1HXX A;  2KXP A;  2F1V A;  1GFN A;  3QRA A;  4FOZ A;  4PJ0 O;  4AYM C;  1T16 A;  3PQS A;  5G38 A;  3PRN A;  3BS0 A;  4UB8 O;  3AA0 B;  1HXT A;  1ZHY A;  3AA1 B;  3DWO X;  3LK2 A;  4LSI A;  3LK4 1;  2POR A;  4LSE A;  1GFP A;  2R4L A;  3T0S A;  4AKM A;  5D5D A;  1Q9G A;  5G39 A;  2W81 C;  2XG6 A;  3AA6 A;  2Y7S A;  4E1T A;  4O4U A;  3C5O A;  4G75 A;  2KC0 A;  3POU A;  4AKR A;  1H6S 1;  1Q9F A;  3POQ A;  4C4V A;  2R89 A;  2X9K A;  3PF1 A;  4G76 A;  4C00 A;  3WU2 O;  2X27 X;  3O0E A;  4N58 A;  4PR7 A;  4D64 A;  3AAE A;  2K4T A;  5DL5 A;  4AUI A;  4CTD A;  4FES A;  3TZG A;  4AFK A;  2Y0K A;  1ORM A;  5DL6 A;  1BT9 A;  3AAA B;  2R8A A;  2YNK A;  3DZM A;  6PRN A;  3HOL A;  4UB6 O;  5B5E O;  4O3Z A;  5ADX K;  3UAQ A;  3LK3 A;  5G26 A;  3SYB A;  5H2F O;  3JCU O;  3A0B O;  2F1T A;  2XE5 A;  3HWB A;  2R4P A;  2M07 A;  3AA7 B;  4LSF A;  2XE3 A;  2KZ7 B;  3K19 A;  4RJX A;  5DL8 A;  3VE2 A;  3VZT X;  1PHO A;  4KR4 A;  2QTK A;  4D65 A;  5KAF O;  2AXT O;  3LK4 2;  4FSO A;  5E79 O;  3PGU A;  1QJP A;  4AYN A;  1BXW A;  2GE4 A;  2FGR A;  4C69 X;  1BH3 A;  7PRN A;  2N2M A;  5TIS O;  2YPV A;  4GCQ A;  4FZL A;  8PRN A;  4QQ1 A;  2R4O A;  3NJT A;  2R88 A;  1PRN A;  2XTR A;  4RJW A;  3LK2 B;  2J4U P;  4AYE C;  3SY9 A;  4IL6 O;  2LHF A;  5JDP A;  2WJR A;  3AA6 B;  3POR A;  3SZV A;  4GCS A;  2WJQ A;  1T1L A;  5B66 O;  3VZW X;  1S5L O;  3KVD D;  3QRC A;  3VE1 A;  4C4V B;  5KAI O;  2ZLD A;  2IWW A;  2ERV A;  1P4T A;  3NSG A;  4O4X A;  4O3X B;  4O3Y A;  3AAE B;  3UU2 A;  2MHL A;  4K3B A;  2LFU A;  2XMX A;  4RLC A;  2IWV A;  4D5U A;  3RBH A;  3SYS A;  4FSP A;  3A2S X;  1GFM A;  3PGR A;  3G7G A;  4N74 A;  4RLB A;  4N59 A;  5G3A A;  3SY7 A;  4AZL A;  2F1C X;  5GV0 A;  4B61 A;  3LK3 B;  2KDY A;  3AAA A;  1QJ8 A;  2MNH A;  2OMF A;  2KXP B;  2ZFG A;  2PRN A;  5FVN A;  4GHB A;  3WI4 A;  2J1N A;  1ZHZ A;  1QJ9 A;  1IZN A;  2Y0H A;  3FYX A;  3GP6 A;  3POX A;  4FT6 A;  5PRN A;  4LSH A;  1MM4 A;  4FUV A;  2R4N A;  3WI5 A;  1GFO A;  1YS5 A;  5IYU A;  4FZN A;  4AYI D;  3VY9 X;  1MM5 A;  5DL7 A;  3AA0 A;  4N75 A; 
#chains in the Genus database with same CATH homology
 2XE1 A;  4KRA A;  3AA1 A;  4AKR B;  2N2L A;  4AYD C;  3HOE A;  4BUM X;  2Y0L A;  2XE2 A;  5AFU L;  3T24 A;  5EE2 A;  5T5F A;  3DA4 A;  4O49 A;  4XNL A;  2Y2X A;  2JMM A;  4XNK A;  1G90 A;  4FRX A;  1ZHW A;  4O3W A;  4Z3T A;  3UPG A;  1E54 A;  4FZM A;  2O4V A;  1HXU A;  4KR8 A;  3SZD A;  5AFU K;  4JCH A;  2XTQ A;  2M06 A;  3DA3 A;  4PUX A;  1GFQ A;  5ADX L;  3T20 A;  4GCP A;  3HW9 A;  4GF4 A;  3PQU A;  3V8U A;  4E1S A;  3AA7 A;  2W80 C;  1OSM A;  2KZ7 A;  1THQ A;  4JFB A;  4F4B A;  3JTY A;  4RL9 A;  1OPF A;  1MPF A;  1ZHX A;  4FMS A;  3VY8 X;  2FGQ X;  2K0L A;  1IZN B;  3EMN X;  1ZHT A;  4FRT A;  4U9C A;  2ODJ A;  1HXX A;  2KXP A;  2F1V A;  1GFN A;  3QRA A;  4FOZ A;  4AYM C;  3PQS A;  3PRN A;  3AA0 B;  1HXT A;  1ZHY A;  3AA1 B;  3LK2 A;  4LSI A;  3LK4 1;  2POR A;  4LSE A;  1GFP A;  3T0S A;  4AKM A;  5D5D A;  1Q9G A;  2W81 C;  2XG6 A;  3AA6 A;  2Y7S A;  4E1T A;  4O4U A;  3C5O A;  4G75 A;  2KC0 A;  3POU A;  4AKR A;  1H6S 1;  1Q9F A;  3POQ A;  4G76 A;  2X27 X;  3O0E A;  4N58 A;  4D64 A;  3AAE A;  2K4T A;  5DL5 A;  4AUI A;  4FES A;  3TZG A;  4AFK A;  2Y0K A;  1ORM A;  5DL6 A;  1BT9 A;  3AAA B;  2YNK A;  6PRN A;  3HOL A;  4O3Z A;  5ADX K;  3UAQ A;  3LK3 A;  5G26 A;  3SYB A;  2F1T A;  2XE5 A;  3HWB A;  3AA7 B;  2M07 A;  4LSF A;  4RJX A;  2XE3 A;  2KZ7 B;  3K19 A;  5DL8 A;  3VE2 A;  3VZU X;  3VZT X;  1PHO A;  4KR4 A;  2QTK A;  4D65 A;  3LK4 2;  4FSO A;  1QJP A;  4AYN A;  1BXW A;  2GE4 A;  2FGR A;  4C69 X;  1BH3 A;  7PRN A;  2N2M A;  2YPV A;  4GCQ A;  4FZL A;  8PRN A;  4QQ1 A;  1PRN A;  2XTR A;  4RJW A;  3LK2 B;  2J4U P;  4AYE C;  3SY9 A;  2LHF A;  5JDP A;  3AA6 B;  3POR A;  3SZV A;  4GCS A;  3VZW X;  3KVD D;  3QRC A;  3VE1 A;  2ZLD A;  2ERV A;  1P4T A;  3NSG A;  4O4X A;  4O3X B;  4O3Y A;  3AAE B;  3UU2 A;  2MHL A;  2LFU A;  2XMX A;  4RLC A;  4D5U A;  3RBH A;  3SYS A;  4FSP A;  3A2S X;  1GFM A;  4RLB A;  3G7G A;  4AZL A;  5GV0 A;  4N59 A;  3SY7 A;  4B61 A;  3LK3 B;  2KDY A;  3AAA A;  1QJ8 A;  2MNH A;  2OMF A;  2KXP B;  2ZFG A;  2PRN A;  5FVN A;  4GHB A;  3WI4 A;  2J1N A;  1ZHZ A;  1QJ9 A;  1IZN A;  2Y0H A;  3FYX A;  3GP6 A;  3POX A;  4FT6 A;  5PRN A;  4LSH A;  1MM4 A;  4FUV A;  3WI5 A;  1GFO A;  1YS5 A;  5IYU A;  4FZN A;  4AYI D;  3VY9 X;  1MM5 A;  5DL7 A;  3AA0 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4PUXA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations