4XNKA

X-ray structure of alge1
Total Genus 118
50100150200250300350400020406080100120
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
452
structure length
421
Chain Sequence
PKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQSDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
50100150200250300350400400300200100
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS16 (363-364)TI12 (405-408)S1 (42-53)TII'1 (81-84)TI'1 (57-60)S2 (66-81)S3 (84-95)TIV5 (293-296)S4 (124-135)TIV2 (158-161)S5 (144-153)TI4 (174-177)S6 (163-173)S9 (219-230)TII1 (201-204)3H1 (199-201)S7 (177-185)TIV4 (292-295)S8 (204-216)S12 (272-291)TVIII1 (214-217)TVIII2 (265-268)TII2 (216-219)TI7 (262-265)TIV3 (260-263)TII3 (236-239)S11 (248-261)TI6 (242-245)S13 (298-319)TI9 (355-358)TIV6 (321-324)TI8 (340-343)TII4 (337-340)S18 (392-403)S14 (324-333)TI'2 (338-341)S17 (377-388)TIV7 (347-350)TIV9 (374-377)TI10 (364-367)TIV8 (367-370)TI11 (368-371)S15 (353-354)TIV10 (388-391)TVIII4 (403-406)TII5 (420-423)TI1 (55-58)TIV1 (95-98)TI3 (155-158)TI5 (191-194)TVIII3 (270-273)TIV11 (412-415)Updating...
connected with : NaN
molecule tags Transport protein
source organism Pseudomonas aeruginosa pao1
publication title In meso in situ serial X-ray crystallography of soluble and membrane proteins.
pubmed doi rcsb
molecule keywords Alginate production protein AlgE
total genus 118
structure length 421
sequence length 452
ec nomenclature
pdb deposition date 2015-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 4xnkA00
4XNKA 4AZLA 4XNLA 4B61A 5IYUA 4AFKA 3RBHA 5D5DA
chains in the Genus database with same CATH superfamily
3PF1A 3AA6B 4E1SA 3VY8X 1THQA 4O4UA 5KAFO 5TISO 2YPVA 4K3CA 2R4OA 3DWNA 4LSIA 5PRNA 3LK3B 2JMMA 3K19A 3VZWX 2ZFGA 2R4PA 1QJ8A 2LHFA 2N2LA 3AAEA 1BT9A 3DA4A 2Y0KA 1Q9GA 3HOEA 1GFOA 1GFNA 4XNLA 4B61A 3DZMA 1E54A 2KC0A 1MM4A 4AUIA 3LK2B 4AYMC 1T1LA 3HOLA 4GCQA 2ZLDA 2Y0LA 3VZUX 1HXUA 4KR4A 3V8UA 2IWVA 1ORMA 4AYID 2WVPA 2K4TA 3SY9A 4PJ0O 1ZHZA 4N74A 3RBHA 1QJPA 1BXWA 5D5DA 5DL7A 4GF4A 4FSOA 5EE2A 1P4TA 2Y2XA 1ZHWA 3A0BO 2W80C 2FGRA 3T24A 5H2FO 3HWBA 2K0LA 2F1VA 1S5LO 2M07A 2OMFA 4RJXA 5DL5A 2KXPB 2LFUA 4AYDC 1GFMA 3AAAB 4UB6O 2QTKA 3UPGA 4FZNA 2ODJA 1PHOA 2MNHA 2R88A 5IYUA 2IWWA 3DA3A 4C4VB 2X27X 4Z3TA 2KZ7A 3UU2A 4AYNA 1OSMA 2XE1A 4G76A 3T0SA 6PRNA 3AA1B 3SYBA 2J4UP 4RL9A 5JDPA 2MHLA 4F4BA 2XTRA 4N59A 3PGSA 3POXA 4D5UA 1IZNB 4AYEC 4FT6A 4AKRB 4FESA 3WI4A 2R8AA 4KRAA 2ERVA 1QJ9A 8PRNA 4C69X 2R89A 3JTYA 2XE2A 1T16A 3EMNX 5KAIO 4GHBA 2XE5A 3FYXA 3PGRA 3QRAA 1G90A 1HXTA 1H6S1 4FMSA 3PQUA 3PORA 3VY9X 4FOZA 3UAQA 3AA7A 3JCUO 3SY7A 7PRNA 4JFBA 3LK42 4O49A 3KZIO 1HXXA 4U9CA 3AA0A 3VZTX 4GCSA 4FRXA 4N75A 5G26A 3TZGA 2J1NA 4FQEA 4PR7A 4KR8A 3KVDD 2WJQA 3AA6A 3AAEB 3C5OA 3WI5A 3PGUA 2XTQA 5ADXK 3T20A 3POQA 1BH3A 4FZMA 1ZHTA 3LK3A 4AKMA 5G3AA 4FSPA 2PORA 3SZDA 5G38A 1PRNA 4LSEA 2WJRA 4PUXA 2R4NA 4FZLA 5AFUK 4O3ZA 3POUA 4QQ1A 1GFQA 4CTDA 5DL6A 3LK2A 4E1TA 4RJWA 3VE2A 4O4XA 3DWOX 2XMXA 4UB8O 4O3WA 2O4VA 4FUVA 3G7GA 4RLBA 3SYSA 4C00A 4IL6O 5DL8A 5E79O 2W81C 3LK41 5AFUL 3NSGA 3WU2O 2XG6A 2F1CX 2XE3A 2JQYA 5FVNA 3VE1A 3O0EA 4XNKA 5T5FA 4FRTA 3GP6A 2KXPA 2KZ7B 4LSFA 3AAAA 3QRCA 5GTIO 1ZHXA 4D64A 4JCHA 3A0HO 4K3BA 3NJTA 4LSHA 4N58A 1YS5A 1Q9FA 4G75A 3BS0A 4GCPA 3BRZA 4AZLA 4C4VA 3PRNA 2N2MA 5B66O 3A2SX 3AA1A 4RLCA 1OPFA 1GFPA 2Y0HA 1ZHYA 3BRYA 5G39A 2F1TA 1IZNA 3SZVA 4AKRA 2KDYA 2R4LA 4O3XB 5ADXL 3PQSA 2YNKA 3HW9A 5GTHO 4O3YA 2X9KA 4AFKA 2Y7SA 2M06A 3AA7B 1MM5A 2FGQX 4BUMX 1MPFA 5B5EO 5GV0A 2PRNA 2GE4A 4D65A 3AA0B 2AXTO
chains in the Genus database with same CATH topology
3AA6B 4E1SA 3VY8X 1THQA 4O4UA 6PRNA 2YPVA 5PRNA 4LSIA 3LK3B 2JMMA 3K19A 3VZWX 2ZFGA 2LHFA 1QJ8A 2N2LA 3AAEA 3DA4A 1BT9A 2Y0KA 1Q9GA 3HOEA 1GFOA 1GFNA 4XNLA 4B61A 1E54A 2KC0A 1MM4A 4AUIA 3LK2B 4AYMC 3HOLA 4GCQA 2ZLDA 2Y0LA 3VZUX 1HXUA 4KR4A 3V8UA 1ORMA 4AYID 2K4TA 3SY9A 1ZHZA 3RBHA 1QJPA 1BXWA 5D5DA 5DL7A 4GF4A 4FSOA 5EE2A 1P4TA 2Y2XA 1ZHWA 3T24A 2W80C 2FGRA 3HWBA 2K0LA 2F1VA 2OMFA 2M07A 4RJXA 5DL5A 2KXPB 2LFUA 4AYDC 1GFMA 3AAAB 3UPGA 2QTKA 4FZNA 2ODJA 1PHOA 2MNHA 5IYUA 3DA3A 4Z3TA 2X27X 2KZ7A 3UU2A 4AYNA 1OSMA 2XE1A 4G76A 3T0SA 2J4UP 3AA1B 3SYBA 4RL9A 5JDPA 2MHLA 4F4BA 2XTRA 4N59A 3POXA 4D5UA 1IZNB 4AYEC 4FT6A 4AKRB 4FESA 3WI4A 4KRAA 8PRNA 2ERVA 1QJ9A 4C69X 3JTYA 5T5FA 2XE2A 3EMNX 4GHBA 2XE5A 3FYXA 3QRAA 1G90A 1HXTA 1H6S1 4FMSA 3PQUA 3PORA 3VY9X 4FOZA 3UAQA 3AA7A 3SY7A 7PRNA 4JFBA 3LK42 4O49A 1HXXA 4U9CA 3AA0A 3VZTX 4GCSA 4FRXA 3TZGA 5G26A 2J1NA 4KR8A 3KVDD 3AA6A 3AAEB 3C5OA 3WI5A 2XTQA 5ADXK 3T20A 3POQA 1BH3A 4FZMA 1ZHTA 3LK3A 4AKMA 4FSPA 2PORA 3SZDA 1PRNA 4LSEA 4PUXA 5AFUK 4FZLA 4O3ZA 3POUA 4QQ1A 1GFQA 5DL6A 3LK2A 4E1TA 4RJWA 3VE2A 4O4XA 2XMXA 4O3WA 2O4VA 4FUVA 3G7GA 4RLBA 3SYSA 5DL8A 2W81C 3LK41 5AFUL 3NSGA 2XG6A 2XE3A 5FVNA 3VE1A 3O0EA 4XNKA 4FRTA 3GP6A 2KXPA 2KZ7B 4LSFA 3AAAA 3QRCA 1ZHXA 4D64A 4JCHA 4N58A 4LSHA 1YS5A 1Q9FA 4G75A 4GCPA 4AZLA 3PRNA 2N2MA 3A2SX 3AA1A 4RLCA 1OPFA 1GFPA 2Y0HA 1ZHYA 2F1TA 1IZNA 3SZVA 4AKRA 2KDYA 4O3XB 5ADXL 3PQSA 2YNKA 3HW9A 4O3YA 4AFKA 2Y7SA 2M06A 3AA7B 1MM5A 2FGQX 4BUMX 1MPFA 5GV0A 2PRNA 2GE4A 4D65A 3AA0B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XNK A;  4AZL A;  4XNL A;  4B61 A;  5IYU A;  4AFK A;  3RBH A;  5D5D A; 
#chains in the Genus database with same CATH topology
 3PF1 A;  3AA6 B;  4E1S A;  3VY8 X;  1THQ A;  4O4U A;  5KAF O;  5TIS O;  2YPV A;  4K3C A;  2R4O A;  3DWN A;  4LSI A;  5PRN A;  3LK3 B;  2JMM A;  3K19 A;  3VZW X;  2ZFG A;  2R4P A;  1QJ8 A;  2LHF A;  2N2L A;  3AAE A;  1BT9 A;  3DA4 A;  2Y0K A;  1Q9G A;  3HOE A;  1GFO A;  1GFN A;  4XNL A;  4B61 A;  3DZM A;  1E54 A;  2KC0 A;  1MM4 A;  4AUI A;  3LK2 B;  4AYM C;  1T1L A;  3HOL A;  4GCQ A;  2ZLD A;  2Y0L A;  3VZU X;  1HXU A;  4KR4 A;  3V8U A;  2IWV A;  1ORM A;  4AYI D;  2WVP A;  2K4T A;  3SY9 A;  4PJ0 O;  1ZHZ A;  4N74 A;  3RBH A;  1QJP A;  1BXW A;  5D5D A;  5DL7 A;  4GF4 A;  4FSO A;  5EE2 A;  1P4T A;  2Y2X A;  1ZHW A;  3A0B O;  2W80 C;  2FGR A;  3T24 A;  5H2F O;  3HWB A;  2K0L A;  2F1V A;  1S5L O;  2M07 A;  2OMF A;  4RJX A;  5DL5 A;  2KXP B;  2LFU A;  4AYD C;  1GFM A;  3AAA B;  4UB6 O;  2QTK A;  3UPG A;  4FZN A;  2ODJ A;  1PHO A;  2MNH A;  2R88 A;  5IYU A;  2IWW A;  3DA3 A;  4C4V B;  2X27 X;  4Z3T A;  2KZ7 A;  3UU2 A;  4AYN A;  1OSM A;  2XE1 A;  4G76 A;  3T0S A;  6PRN A;  3AA1 B;  3SYB A;  2J4U P;  4RL9 A;  5JDP A;  2MHL A;  4F4B A;  2XTR A;  4N59 A;  3PGS A;  3POX A;  4D5U A;  1IZN B;  4AYE C;  4FT6 A;  4AKR B;  4FES A;  3WI4 A;  2R8A A;  4KRA A;  2ERV A;  1QJ9 A;  8PRN A;  4C69 X;  2R89 A;  3JTY A;  2XE2 A;  1T16 A;  3EMN X;  5KAI O;  4GHB A;  2XE5 A;  3FYX A;  3PGR A;  3QRA A;  1G90 A;  1HXT A;  1H6S 1;  4FMS A;  3PQU A;  3POR A;  3VY9 X;  4FOZ A;  3UAQ A;  3AA7 A;  3JCU O;  3SY7 A;  7PRN A;  4JFB A;  3LK4 2;  4O49 A;  3KZI O;  1HXX A;  4U9C A;  3AA0 A;  3VZT X;  4GCS A;  4FRX A;  4N75 A;  5G26 A;  3TZG A;  2J1N A;  4FQE A;  4PR7 A;  4KR8 A;  3KVD D;  2WJQ A;  3AA6 A;  3AAE B;  3C5O A;  3WI5 A;  3PGU A;  2XTQ A;  5ADX K;  3T20 A;  3POQ A;  1BH3 A;  4FZM A;  1ZHT A;  3LK3 A;  4AKM A;  5G3A A;  4FSP A;  2POR A;  3SZD A;  5G38 A;  1PRN A;  4LSE A;  2WJR A;  4PUX A;  2R4N A;  4FZL A;  5AFU K;  4O3Z A;  3POU A;  4QQ1 A;  1GFQ A;  4CTD A;  5DL6 A;  3LK2 A;  4E1T A;  4RJW A;  3VE2 A;  4O4X A;  3DWO X;  2XMX A;  4UB8 O;  4O3W A;  2O4V A;  4FUV A;  3G7G A;  4RLB A;  3SYS A;  4C00 A;  4IL6 O;  5DL8 A;  5E79 O;  2W81 C;  3LK4 1;  5AFU L;  3NSG A;  3WU2 O;  2XG6 A;  2F1C X;  2XE3 A;  2JQY A;  5FVN A;  3VE1 A;  3O0E A;  4XNK A;  5T5F A;  4FRT A;  3GP6 A;  2KXP A;  2KZ7 B;  4LSF A;  3AAA A;  3QRC A;  5GTI O;  1ZHX A;  4D64 A;  4JCH A;  3A0H O;  4K3B A;  3NJT A;  4LSH A;  4N58 A;  1YS5 A;  1Q9F A;  4G75 A;  3BS0 A;  4GCP A;  3BRZ A;  4AZL A;  4C4V A;  3PRN A;  2N2M A;  5B66 O;  3A2S X;  3AA1 A;  4RLC A;  1OPF A;  1GFP A;  2Y0H A;  1ZHY A;  3BRY A;  5G39 A;  2F1T A;  1IZN A;  3SZV A;  4AKR A;  2KDY A;  2R4L A;  4O3X B;  5ADX L;  3PQS A;  2YNK A;  3HW9 A;  5GTH O;  4O3Y A;  2X9K A;  4AFK A;  2Y7S A;  2M06 A;  3AA7 B;  1MM5 A;  2FGQ X;  4BUM X;  1MPF A;  5B5E O;  5GV0 A;  2PRN A;  2GE4 A;  4D65 A;  3AA0 B;  2AXT O; 
#chains in the Genus database with same CATH homology
 3AA6 B;  4E1S A;  3VY8 X;  1THQ A;  4O4U A;  6PRN A;  2YPV A;  5PRN A;  4LSI A;  3LK3 B;  2JMM A;  3K19 A;  3VZW X;  2ZFG A;  2LHF A;  1QJ8 A;  2N2L A;  3AAE A;  3DA4 A;  1BT9 A;  2Y0K A;  1Q9G A;  3HOE A;  1GFO A;  1GFN A;  4XNL A;  4B61 A;  1E54 A;  2KC0 A;  1MM4 A;  4AUI A;  3LK2 B;  4AYM C;  3HOL A;  4GCQ A;  2ZLD A;  2Y0L A;  3VZU X;  1HXU A;  4KR4 A;  3V8U A;  1ORM A;  4AYI D;  2K4T A;  3SY9 A;  1ZHZ A;  3RBH A;  1QJP A;  1BXW A;  5D5D A;  5DL7 A;  4GF4 A;  4FSO A;  5EE2 A;  1P4T A;  2Y2X A;  1ZHW A;  3T24 A;  2W80 C;  2FGR A;  3HWB A;  2K0L A;  2F1V A;  2OMF A;  2M07 A;  4RJX A;  5DL5 A;  2KXP B;  2LFU A;  4AYD C;  1GFM A;  3AAA B;  3UPG A;  2QTK A;  4FZN A;  2ODJ A;  1PHO A;  2MNH A;  5IYU A;  3DA3 A;  4Z3T A;  2X27 X;  2KZ7 A;  3UU2 A;  4AYN A;  1OSM A;  2XE1 A;  4G76 A;  3T0S A;  2J4U P;  3AA1 B;  3SYB A;  4RL9 A;  5JDP A;  2MHL A;  4F4B A;  2XTR A;  4N59 A;  3POX A;  4D5U A;  1IZN B;  4AYE C;  4FT6 A;  4AKR B;  4FES A;  3WI4 A;  4KRA A;  8PRN A;  2ERV A;  1QJ9 A;  4C69 X;  3JTY A;  5T5F A;  2XE2 A;  3EMN X;  4GHB A;  2XE5 A;  3FYX A;  3QRA A;  1G90 A;  1HXT A;  1H6S 1;  4FMS A;  3PQU A;  3POR A;  3VY9 X;  4FOZ A;  3UAQ A;  3AA7 A;  3SY7 A;  7PRN A;  4JFB A;  3LK4 2;  4O49 A;  1HXX A;  4U9C A;  3AA0 A;  3VZT X;  4GCS A;  4FRX A;  3TZG A;  5G26 A;  2J1N A;  4KR8 A;  3KVD D;  3AA6 A;  3AAE B;  3C5O A;  3WI5 A;  2XTQ A;  5ADX K;  3T20 A;  3POQ A;  1BH3 A;  4FZM A;  1ZHT A;  3LK3 A;  4AKM A;  4FSP A;  2POR A;  3SZD A;  1PRN A;  4LSE A;  4PUX A;  5AFU K;  4FZL A;  4O3Z A;  3POU A;  4QQ1 A;  1GFQ A;  5DL6 A;  3LK2 A;  4E1T A;  4RJW A;  3VE2 A;  4O4X A;  2XMX A;  4O3W A;  2O4V A;  4FUV A;  3G7G A;  4RLB A;  3SYS A;  5DL8 A;  2W81 C;  3LK4 1;  5AFU L;  3NSG A;  2XG6 A;  2XE3 A;  5FVN A;  3VE1 A;  3O0E A;  4XNK A;  4FRT A;  3GP6 A;  2KXP A;  2KZ7 B;  4LSF A;  3AAA A;  3QRC A;  1ZHX A;  4D64 A;  4JCH A;  4N58 A;  4LSH A;  1YS5 A;  1Q9F A;  4G75 A;  4GCP A;  4AZL A;  3PRN A;  2N2M A;  3A2S X;  3AA1 A;  4RLC A;  1OPF A;  1GFP A;  2Y0H A;  1ZHY A;  2F1T A;  1IZN A;  3SZV A;  4AKR A;  2KDY A;  4O3X B;  5ADX L;  3PQS A;  2YNK A;  3HW9 A;  4O3Y A;  4AFK A;  2Y7S A;  2M06 A;  3AA7 B;  1MM5 A;  2FGQ X;  4BUM X;  1MPF A;  5GV0 A;  2PRN A;  2GE4 A;  4D65 A;  3AA0 B; 
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