5B5E | Genus

Total Genus 50

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	50
sequence length	243
structure length	243
Chain Sequence	TLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Electron transport, photosynthesis
publication title	Two Different Structures of the Oxygen-Evolving Complex in the Same Polypeptide Frameworks of Photosystem II pubmed doi rcsb
molecule keywords	Photosystem II protein D1
total genus	50
structure length	243
sequence length	243
chains with identical sequence	o
ec nomenclature
pdb deposition date	2016-05-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
O	PF01716	MSP	Manganese-stabilising protein / photosystem II polypeptide

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.30	Mainly Beta	Beta Barrel	Porin	Photosystem II, cytochrome c-550 precursor	5b5eO01
3.30.2050.10	Alpha Beta	2-Layer Sandwich	photosynthetic oxygen evolving center fold	photosynthetic oxygen evolving center domain	5b5eO02

5GTHO 1S5LO 3JCUO 5B5EO 5G38A 4IL6O 4UB8O 5E79O 5GTIO 5G39A 5B66O 3WU2O 3A0BO 5KAIO 5TISO 4PJ0O 3KZIO 5G3AA 5H2FO 2AXTO 4UB6O 3A0HO 5KAFO
chains in the Genus database with same CATH superfamily

5GTHO 2R4LA 1GFOA 2O4VA 3VE1A 2XTQA 3PF1A 5ADXK 5B5EO 2K4TA 3LK2A 4GCQA 1THQA 4K3BA 2Y0LA 5DL8A 4RLCA 2XE3A 5G38A 4E1SA 2XE1A 4N74A 2R8AA 1ORMA 4FSPA 2PRNA 4C4VA 5B66O 2J1NA 1E54A 4JFBA 4C00A 3AA6A 4FZNA 3WU2O 2XMXA 3A0BO 3DA4A 1MM4A 3AA7A 3DWNA 3POXA 4FT6A 4FZMA 4GF4A 4RJWA 4PUXA 5KAIO 3SZVA 5TISO 4AKMA 4PJ0O 2ODJA 5DL6A 2XE5A 4E1TA 2MNHA 3FYXA 3RBHA 1BT9A 3QRCA 4O3YA 1PRNA 4UB6O 3AA1A 2FGQX 3HWBA 4LSEA 4XNLA 3VZWX 2FGRA 3A0HO 3LK42 3POUA 3O0EA 5KAFO 2WJQA 3BS0A 2R88A 3G7GA 1PHOA 2F1CX 4N59A 4O49A 2F1VA 5G26A 1S5LO 2X27X 3UU2A 4N75A 3DWOX 3VY9X 5ADXL 2J4UP 1H6S1 3QRAA 2Y2XA 3AAAB 3NJTA 4GHBA 4KRAA 2XE2A 4N58A 4FMSA 3PGUA 3K19A 6PRNA 5GTIO 5G39A 4AYEC 3AA0A 4O3ZA 4RL9A 2QTKA 3AAEB 2R4NA 1IZNB 4G76A 2YPVA 2R89A 5AFUL 2Y0KA 4AKRB 2R4OA 1Q9FA 4O4UA 4FRXA 4XNKA 3VY8X 4BUMX 1T16A 2Y7SA 2YNKA 3BRYA 3LK41 4FOZA 2KC0A 3WI4A 4AYDC 3KVDD 2KZ7B 2AXTO 2W80C 4AFKA 2M07A 4AYMC 2ERVA 2IWWA 5T5FA 2N2LA 3EMNX 1QJ9A 4RJXA 1QJPA 3PGSA 3LK3A 2KXPA 3DA3A 4G75A 4JCHA 5G3AA 3SYSA 1ZHZA 3POQA 1HXUA 3SY9A 2WJRA 3C5OA 3HOEA 4FSOA 5D5DA 2JMMA 4GCPA 4AUIA 3LK2B 2GE4A 3PGRA 2X9KA 4O3WA 4KR4A 1Q9GA 4IL6O 1OSMA 3SYBA 3SZDA 5E79O 4AYID 4FESA 4C4VB 1OPFA 4GCSA 3UAQA 2IWVA 3NSGA 4KR8A 3AA6B 4C69X 2Y0HA 7PRNA 5FVNA 1YS5A 3AA7B 5PRNA 1BH3A 4B61A 3A2SX 5DL5A 1GFNA 2N2MA 4U9CA 4F4BA 4PR7A 2W81C 2ZFGA 5GV0A 3T24A 1G90A 3PORA 1MM5A 3AA1B 2M06A 1QJ8A 2JQYA 4LSFA 1ZHXA 4FQEA 3WI5A 1BXWA 1HXTA 2K0LA 5DL7A 4D5UA 4FZLA 5JDPA 2KDYA 4O3XB 4FRTA 2ZLDA 4LSHA 2LFUA 2R4PA 3JCUO 1HXXA 2XTRA 3GP6A 3VE2A 4AYNA 2WVPA 3AAAA 2MHLA 4D64A 4Z3TA 4UB8O 4K3CA 3AA0B 3BRZA 3T20A 3PQUA 3SY7A 4CTDA 2LHFA 2F1TA 3HW9A 3V8UA 3AAEA 1ZHYA 1GFPA 1IZNA 5EE2A 5AFUK 8PRNA 1GFQA 3DZMA 2OMFA 3KZIO 4FUVA 4O4XA 4QQ1A 3VZUX 3VZTX 4AKRA 5IYUA 3PRNA 5H2FO 1MPFA 2KZ7A 3UPGA 2XG6A 1GFMA 4AZLA 1P4TA 1ZHWA 3TZGA 4LSIA 2PORA 2KXPB 3JTYA 3HOLA 3LK3B 3T0SA 1ZHTA 1T1LA 4RLBA 4D65A 3PQSA
chains in the Genus database with same CATH topology

5GTHO 1S5LO 3JCUO 5B5EO 5G38A 4IL6O 4UB8O 5E79O 5GTIO 5G39A 5B66O 3WU2O 3A0BO 5KAIO 5TISO 4PJ0O 3KZIO 5G3AA 5H2FO 2AXTO 4UB6O 3A0HO 5KAFO
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5GTH O;  1S5L O;  3JCU O;  5B5E O;  5G38 A;  4IL6 O;  4UB8 O;  5E79 O;  5GTI O;  5G39 A;  5B66 O;  3WU2 O;  3A0B O;  5KAI O;  5TIS O;  4PJ0 O;  3KZI O;  5G3A A;  5H2F O;  2AXT O;  4UB6 O;  3A0H O;  5KAF O; 
#chains in the Genus database with same CATH topology
 5GTH O;  2R4L A;  1GFO A;  2O4V A;  3VE1 A;  2XTQ A;  3PF1 A;  5ADX K;  5B5E O;  2K4T A;  3LK2 A;  4GCQ A;  1THQ A;  4K3B A;  2Y0L A;  5DL8 A;  4RLC A;  2XE3 A;  5G38 A;  4E1S A;  2XE1 A;  4N74 A;  2R8A A;  1ORM A;  4FSP A;  2PRN A;  4C4V A;  5B66 O;  2J1N A;  1E54 A;  4JFB A;  4C00 A;  3AA6 A;  4FZN A;  3WU2 O;  2XMX A;  3A0B O;  3DA4 A;  1MM4 A;  3AA7 A;  3DWN A;  3POX A;  4FT6 A;  4FZM A;  4GF4 A;  4RJW A;  4PUX A;  5KAI O;  3SZV A;  5TIS O;  4AKM A;  4PJ0 O;  2ODJ A;  5DL6 A;  2XE5 A;  4E1T A;  2MNH A;  3FYX A;  3RBH A;  1BT9 A;  3QRC A;  4O3Y A;  1PRN A;  4UB6 O;  3AA1 A;  2FGQ X;  3HWB A;  4LSE A;  4XNL A;  3VZW X;  2FGR A;  3A0H O;  3LK4 2;  3POU A;  3O0E A;  5KAF O;  2WJQ A;  3BS0 A;  2R88 A;  3G7G A;  1PHO A;  2F1C X;  4N59 A;  4O49 A;  2F1V A;  5G26 A;  1S5L O;  2X27 X;  3UU2 A;  4N75 A;  3DWO X;  3VY9 X;  5ADX L;  2J4U P;  1H6S 1;  3QRA A;  2Y2X A;  3AAA B;  3NJT A;  4GHB A;  4KRA A;  2XE2 A;  4N58 A;  4FMS A;  3PGU A;  3K19 A;  6PRN A;  5GTI O;  5G39 A;  4AYE C;  3AA0 A;  4O3Z A;  4RL9 A;  2QTK A;  3AAE B;  2R4N A;  1IZN B;  4G76 A;  2YPV A;  2R89 A;  5AFU L;  2Y0K A;  4AKR B;  2R4O A;  1Q9F A;  4O4U A;  4FRX A;  4XNK A;  3VY8 X;  4BUM X;  1T16 A;  2Y7S A;  2YNK A;  3BRY A;  3LK4 1;  4FOZ A;  2KC0 A;  3WI4 A;  4AYD C;  3KVD D;  2KZ7 B;  2AXT O;  2W80 C;  4AFK A;  2M07 A;  4AYM C;  2ERV A;  2IWW A;  5T5F A;  2N2L A;  3EMN X;  1QJ9 A;  4RJX A;  1QJP A;  3PGS A;  3LK3 A;  2KXP A;  3DA3 A;  4G75 A;  4JCH A;  5G3A A;  3SYS A;  1ZHZ A;  3POQ A;  1HXU A;  3SY9 A;  2WJR A;  3C5O A;  3HOE A;  4FSO A;  5D5D A;  2JMM A;  4GCP A;  4AUI A;  3LK2 B;  2GE4 A;  3PGR A;  2X9K A;  4O3W A;  4KR4 A;  1Q9G A;  4IL6 O;  1OSM A;  3SYB A;  3SZD A;  5E79 O;  4AYI D;  4FES A;  4C4V B;  1OPF A;  4GCS A;  3UAQ A;  2IWV A;  3NSG A;  4KR8 A;  3AA6 B;  4C69 X;  2Y0H A;  7PRN A;  5FVN A;  1YS5 A;  3AA7 B;  5PRN A;  1BH3 A;  4B61 A;  3A2S X;  5DL5 A;  1GFN A;  2N2M A;  4U9C A;  4F4B A;  4PR7 A;  2W81 C;  2ZFG A;  5GV0 A;  3T24 A;  1G90 A;  3POR A;  1MM5 A;  3AA1 B;  2M06 A;  1QJ8 A;  2JQY A;  4LSF A;  1ZHX A;  4FQE A;  3WI5 A;  1BXW A;  1HXT A;  2K0L A;  5DL7 A;  4D5U A;  4FZL A;  5JDP A;  2KDY A;  4O3X B;  4FRT A;  2ZLD A;  4LSH A;  2LFU A;  2R4P A;  3JCU O;  1HXX A;  2XTR A;  3GP6 A;  3VE2 A;  4AYN A;  2WVP A;  3AAA A;  2MHL A;  4D64 A;  4Z3T A;  4UB8 O;  4K3C A;  3AA0 B;  3BRZ A;  3T20 A;  3PQU A;  3SY7 A;  4CTD A;  2LHF A;  2F1T A;  3HW9 A;  3V8U A;  3AAE A;  1ZHY A;  1GFP A;  1IZN A;  5EE2 A;  5AFU K;  8PRN A;  1GFQ A;  3DZM A;  2OMF A;  3KZI O;  4FUV A;  4O4X A;  4QQ1 A;  3VZU X;  3VZT X;  4AKR A;  5IYU A;  3PRN A;  5H2F O;  1MPF A;  2KZ7 A;  3UPG A;  2XG6 A;  1GFM A;  4AZL A;  1P4T A;  1ZHW A;  3TZG A;  4LSI A;  2POR A;  2KXP B;  3JTY A;  3HOL A;  3LK3 B;  3T0S A;  1ZHT A;  1T1L A;  4RLB A;  4D65 A;  3PQS A; 
#chains in the Genus database with same CATH homology
 5GTH O;  1S5L O;  3JCU O;  5B5E O;  5G38 A;  4IL6 O;  4UB8 O;  5E79 O;  5GTI O;  5G39 A;  5B66 O;  3WU2 O;  3A0B O;  5KAI O;  5TIS O;  4PJ0 O;  3KZI O;  5G3A A;  5H2F O;  2AXT O;  4UB6 O;  3A0H O;  5KAF O;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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5B5EO

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations