5B66O

Crystal structure analysis of photosystem ii complex
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
243
structure length
243
Chain Sequence
TLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Two Different Structures of the Oxygen-Evolving Complex in the Same Polypeptide Frameworks of Photosystem II
pubmed doi rcsb
molecule tags Electron transport, photosynthesis
molecule keywords Photosystem II protein D1
total genus 53
structure length 243
sequence length 243
chains with identical sequence o
ec nomenclature
pdb deposition date 2016-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
O PF01716 MSP Manganese-stabilising protein / photosystem II polypeptide
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 5b66O01
3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domain 5b66O02
5H2FO 5TISO 4IL6O 5E79O 5GTHO 1S5LO 5B66O 4PJ0O 5KAIO 3WU2O 3KZIO 4UB8O 5G39A 3A0HO 5KAFO 5GTIO 5B5EO 4UB6O 2AXTO 5G38A 3A0BO 5G3AA 3JCUO
chains in the Genus database with same CATH superfamily
2M07A 1BT9A 3HOEA 2WJRA 4FSPA 4RJWA 3T24A 3V8UA 4C4VB 2ODJA 5H2FO 1MM5A 3AA0B 3KVDD 4O3ZA 4AKMA 2J1NA 2R4PA 3LK3B 4GCPA 3EMNX 5GTHO 1MM4A 2KDYA 4PJ0O 5B66O 2YPVA 4AFKA 1E54A 4GF4A 4FQEA 4AKRA 2XTRA 2XE5A 3O0EA 1IZNB 4E1SA 2N2MA 3DWNA 3POUA 2Y0KA 4FSOA 2F1TA 4FUVA 5FVNA 5G26A 3SY9A 3NSGA 4K3CA 1PRNA 5GTIO 2MHLA 3DZMA 4K3BA 4O3YA 1HXXA 3LK42 1ORMA 2AXTO 5AFUL 4GCSA 3AA7B 5EE2A 1BH3A 4AYMC 4RJXA 4D64A 3T20A 2X27X 1ZHXA 2XG6A 2MNHA 3HW9A 2KZ7A 3HOLA 1QJ9A 3SZVA 3SZDA 4C00A 2JQYA 2ZLDA 3BRYA 3PQUA 4FMSA 5GV0A 3DWOX 2OMFA 3SYBA 1PHOA 7PRNA 3AA6B 4IL6O 2LFUA 2KXPA 5E79O 2X9KA 2R4LA 3SYSA 2KZ7B 2YNKA 3UU2A 1GFPA 2IWVA 2XE1A 2XE3A 4FRTA 4KRAA 5DL6A 3WU2O 4LSEA 2FGQX 3AAEA 1HXTA 4FZLA 3FYXA 2KXPB 2R8AA 1Q9GA 1THQA 5KAFO 1T16A 3AAEB 3DA3A 4PR7A 4RLBA 3K19A 3WI4A 4E1TA 5B5EO 1ZHWA 3PGRA 3HWBA 4BUMX 4UB6O 2K0LA 3TZGA 4AKRB 5JDPA 4G75A 4RLCA 3JTYA 2PORA 5IYUA 4FRXA 3AAAA 2FGRA 2Y0HA 2GE4A 1P4TA 3PGSA 4O3WA 5T5FA 2Y7SA 4FOZA 2XTQA 3BS0A 4LSFA 3VZTX 3PGUA 2XE2A 2ZFGA 5TISO 2J4UP 2XMXA 3RBHA 4CTDA 3A2SX 1ZHYA 2R4NA 3DA4A 3PQSA 2W81C 4LSHA 3KZIO 5KAIO 3PRNA 4N59A 4AZLA 4Z3TA 3T0SA 4UB8O 2F1CX 2WJQA 4FT6A 4AYDC 1ZHTA 2R4OA 2Y2XA 3A0HO 4O3XB 1GFOA 2WVPA 4C4VA 1OSMA 3LK2A 3VY9X 4O4XA 4XNLA 6PRNA 3VE2A 4LSIA 4GHBA 2PRNA 4C69X 3GP6A 5D5DA 3QRCA 4KR8A 4KR4A 3A0BO 4QQ1A 2W80C 5DL8A 3LK2B 1GFNA 3LK3A 3JCUO 4O4UA 4PUXA 2JMMA 3VZUX 4GCQA 1QJ8A 4FZMA 3WI5A 3POQA 2N2LA 1OPFA 4N58A 3POXA 2R88A 4O49A 3UAQA 2R89A 1IZNA 1GFMA 4F4BA 1BXWA 1Q9FA 3NJTA 5PRNA 3AAAB 3QRAA 4RL9A 1S5LO 4U9CA 1QJPA 3C5OA 2K4TA 4AYID 4B61A 3VZWX 2F1VA 2Y0LA 4D5UA 4JCHA 1ZHZA 5G39A 4N74A 1HXUA 3AA7A 3SY7A 5DL7A 3PF1A 1T1LA 5AFUK 4AUIA 3UPGA 4FZNA 4G76A 1GFQA 3VE1A 5ADXK 3AA1A 2IWWA 4JFBA 3G7GA 4XNKA 4AYNA 4AYEC 5ADXL 5DL5A 4FESA 5G38A 2QTKA 1H6S1 2ERVA 2O4VA 3AA6A 3VY8X 2LHFA 4D65A 8PRNA 2KC0A 1MPFA 3AA0A 3LK41 4N75A 3AA1B 5G3AA 1G90A 1YS5A 2M06A 3PORA 3BRZA
chains in the Genus database with same CATH topology
5H2FO 5TISO 4IL6O 5E79O 5GTHO 1S5LO 5B66O 4PJ0O 5KAIO 3WU2O 3KZIO 4UB8O 5G39A 3A0HO 5KAFO 5GTIO 5B5EO 4UB6O 2AXTO 5G38A 3A0BO 5G3AA 3JCUO
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5H2F O;  5TIS O;  4IL6 O;  5E79 O;  5GTH O;  1S5L O;  5B66 O;  4PJ0 O;  5KAI O;  3WU2 O;  3KZI O;  4UB8 O;  5G39 A;  3A0H O;  5KAF O;  5GTI O;  5B5E O;  4UB6 O;  2AXT O;  5G38 A;  3A0B O;  5G3A A;  3JCU O; 
#chains in the Genus database with same CATH topology
 2M07 A;  1BT9 A;  3HOE A;  2WJR A;  4FSP A;  4RJW A;  3T24 A;  3V8U A;  4C4V B;  2ODJ A;  5H2F O;  1MM5 A;  3AA0 B;  3KVD D;  4O3Z A;  4AKM A;  2J1N A;  2R4P A;  3LK3 B;  4GCP A;  3EMN X;  5GTH O;  1MM4 A;  2KDY A;  4PJ0 O;  5B66 O;  2YPV A;  4AFK A;  1E54 A;  4GF4 A;  4FQE A;  4AKR A;  2XTR A;  2XE5 A;  3O0E A;  1IZN B;  4E1S A;  2N2M A;  3DWN A;  3POU A;  2Y0K A;  4FSO A;  2F1T A;  4FUV A;  5FVN A;  5G26 A;  3SY9 A;  3NSG A;  4K3C A;  1PRN A;  5GTI O;  2MHL A;  3DZM A;  4K3B A;  4O3Y A;  1HXX A;  3LK4 2;  1ORM A;  2AXT O;  5AFU L;  4GCS A;  3AA7 B;  5EE2 A;  1BH3 A;  4AYM C;  4RJX A;  4D64 A;  3T20 A;  2X27 X;  1ZHX A;  2XG6 A;  2MNH A;  3HW9 A;  2KZ7 A;  3HOL A;  1QJ9 A;  3SZV A;  3SZD A;  4C00 A;  2JQY A;  2ZLD A;  3BRY A;  3PQU A;  4FMS A;  5GV0 A;  3DWO X;  2OMF A;  3SYB A;  1PHO A;  7PRN A;  3AA6 B;  4IL6 O;  2LFU A;  2KXP A;  5E79 O;  2X9K A;  2R4L A;  3SYS A;  2KZ7 B;  2YNK A;  3UU2 A;  1GFP A;  2IWV A;  2XE1 A;  2XE3 A;  4FRT A;  4KRA A;  5DL6 A;  3WU2 O;  4LSE A;  2FGQ X;  3AAE A;  1HXT A;  4FZL A;  3FYX A;  2KXP B;  2R8A A;  1Q9G A;  1THQ A;  5KAF O;  1T16 A;  3AAE B;  3DA3 A;  4PR7 A;  4RLB A;  3K19 A;  3WI4 A;  4E1T A;  5B5E O;  1ZHW A;  3PGR A;  3HWB A;  4BUM X;  4UB6 O;  2K0L A;  3TZG A;  4AKR B;  5JDP A;  4G75 A;  4RLC A;  3JTY A;  2POR A;  5IYU A;  4FRX A;  3AAA A;  2FGR A;  2Y0H A;  2GE4 A;  1P4T A;  3PGS A;  4O3W A;  5T5F A;  2Y7S A;  4FOZ A;  2XTQ A;  3BS0 A;  4LSF A;  3VZT X;  3PGU A;  2XE2 A;  2ZFG A;  5TIS O;  2J4U P;  2XMX A;  3RBH A;  4CTD A;  3A2S X;  1ZHY A;  2R4N A;  3DA4 A;  3PQS A;  2W81 C;  4LSH A;  3KZI O;  5KAI O;  3PRN A;  4N59 A;  4AZL A;  4Z3T A;  3T0S A;  4UB8 O;  2F1C X;  2WJQ A;  4FT6 A;  4AYD C;  1ZHT A;  2R4O A;  2Y2X A;  3A0H O;  4O3X B;  1GFO A;  2WVP A;  4C4V A;  1OSM A;  3LK2 A;  3VY9 X;  4O4X A;  4XNL A;  6PRN A;  3VE2 A;  4LSI A;  4GHB A;  2PRN A;  4C69 X;  3GP6 A;  5D5D A;  3QRC A;  4KR8 A;  4KR4 A;  3A0B O;  4QQ1 A;  2W80 C;  5DL8 A;  3LK2 B;  1GFN A;  3LK3 A;  3JCU O;  4O4U A;  4PUX A;  2JMM A;  3VZU X;  4GCQ A;  1QJ8 A;  4FZM A;  3WI5 A;  3POQ A;  2N2L A;  1OPF A;  4N58 A;  3POX A;  2R88 A;  4O49 A;  3UAQ A;  2R89 A;  1IZN A;  1GFM A;  4F4B A;  1BXW A;  1Q9F A;  3NJT A;  5PRN A;  3AAA B;  3QRA A;  4RL9 A;  1S5L O;  4U9C A;  1QJP A;  3C5O A;  2K4T A;  4AYI D;  4B61 A;  3VZW X;  2F1V A;  2Y0L A;  4D5U A;  4JCH A;  1ZHZ A;  5G39 A;  4N74 A;  1HXU A;  3AA7 A;  3SY7 A;  5DL7 A;  3PF1 A;  1T1L A;  5AFU K;  4AUI A;  3UPG A;  4FZN A;  4G76 A;  1GFQ A;  3VE1 A;  5ADX K;  3AA1 A;  2IWW A;  4JFB A;  3G7G A;  4XNK A;  4AYN A;  4AYE C;  5ADX L;  5DL5 A;  4FES A;  5G38 A;  2QTK A;  1H6S 1;  2ERV A;  2O4V A;  3AA6 A;  3VY8 X;  2LHF A;  4D65 A;  8PRN A;  2KC0 A;  1MPF A;  3AA0 A;  3LK4 1;  4N75 A;  3AA1 B;  5G3A A;  1G90 A;  1YS5 A;  2M06 A;  3POR A;  3BRZ A; 
#chains in the Genus database with same CATH homology
 5H2F O;  5TIS O;  4IL6 O;  5E79 O;  5GTH O;  1S5L O;  5B66 O;  4PJ0 O;  5KAI O;  3WU2 O;  3KZI O;  4UB8 O;  5G39 A;  3A0H O;  5KAF O;  5GTI O;  5B5E O;  4UB6 O;  2AXT O;  5G38 A;  3A0B O;  5G3A A;  3JCU O; 
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similar chains in the pdb database (?% sequence similarity)

 
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