5EE2 | Genus

Total Genus 27

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	148
structure length	122
Chain Sequence	LSKGKITYQVWGIRVRNGQFVTSSVLSFITANFNSNTLAGKILGNSDYGPDVDIQNATITGPTFSGDATSGGKSGKLEGKFFEVSIGGKITFDGDRSLDTVFGGVSYEKKLDDTSQDTNHLT

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Metal transport
source organism	Neisseria gonorrhoeae (strain atcc 700825 / fa 1090)
publication title	Structural analysis of haemoglobin binding by HpuA from the Neisseriaceae family. pubmed doi rcsb
molecule keywords	Hemoglobin-haptoglobin-utilization protein
total genus	27
structure length	122
sequence length	148
ec nomenclature
pdb deposition date	2015-10-22

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.90	Mainly Beta	Beta Barrel	Porin	Porin	5ee2A00

2W80C 3UAQA 4U9CA 4AYNA 3KVDD 5EE2A 4AYID 3PQUA 3VE2A 4O3ZA 3HOEA 2W81C 2LFUA 3V8UA 4O4UA 1YS5A 4O49A 4Z3TA 4AYDC 5T5FA 3HOLA 4O3WA 4QQ1A 4O3YA 4AYEC 2Y7SA 4AYMC 2YPVA 4O4XA 4O3XB 2KDYA 2KC0A 3VE1A 3PQSA
chains in the Genus database with same CATH superfamily

1Q9GA 2Y0KA 4FOZA 4C00A 2KXPA 3O0EA 4AKRA 1ZHWA 1HXTA 3WU2O 2X27X 1BXWA 5G26A 2XE5A 3SZDA 4FQEA 3PQUA 3POQA 1T16A 1E54A 4N58A 3AAAB 4RJXA 3RBHA 3T24A 5ADXL 2LFUA 2IWVA 2R4NA 4N74A 1OSMA 3C5OA 3A2SX 3DWNA 2R88A 3AAAA 1T1LA 1THQA 4D64A 1ORMA 2R4PA 3KZIO 4KRAA 4KR4A 5GV0A 3AA6B 3BRZA 2PORA 4AYEC 1ZHYA 1PHOA 3A0BO 3LK3B 2OMFA 1GFPA 4FRTA 2R4OA 4G76A 5DL8A 5GTIO 1HXXA 4CTDA 3VZTX 2N2MA 2FGRA 3SY9A 3LK3A 2ZLDA 3QRCA 3T20A 3A0HO 2WJQA 2J4UP 2M07A 3KVDD 3DZMA 2Y0LA 5DL6A 4GCQA 3LK42 4GCPA 4C69X 3SZVA 1IZNB 3QRAA 3VE2A 3TZGA 5B66O 1MM5A 1PRNA 4FZLA 2YNKA 4D65A 2WJRA 3EMNX 1IZNA 1P4TA 2MNHA 3PGSA 3AA1B 4O4UA 4RLCA 1YS5A 5G39A 2XE2A 5KAIO 2GE4A 2O4VA 4O49A 3UU2A 2KZ7B 3AA0B 3WI5A 2M06A 1BT9A 3AAEB 3G7GA 3DA3A 4O3WA 1ZHXA 4IL6O 3VY8X 3UPGA 4FMSA 2KZ7A 3POUA 3AAEA 2YPVA 1MPFA 4O3XB 4LSEA 5E79O 3VZUX 4B61A 2IWWA 3AA7B 2X9KA 3AA6A 3VE1A 2K0LA 2J1NA 5JDPA 4PJ0O 2W80C 2R8AA 5KAFO 3T0SA 2Y0HA 3UAQA 1G90A 4F4BA 1QJ9A 1ZHZA 5EE2A 4FESA 5AFUL 1GFMA 3BS0A 3DA4A 2XTRA 3LK41 2XMXA 4AUIA 2R89A 4N59A 4O3ZA 4LSFA 4XNKA 2K4TA 3VZWX 1Q9FA 4RLBA 2W81C 5G38A 4D5UA 3V8UA 5AFUK 4PR7A 4C4VB 3HWBA 4Z3TA 7PRNA 4N75A 3K19A 3SYBA 1S5LO 2LHFA 3HOLA 3FYXA 5GTHO 4C4VA 2XE1A 3AA1A 3JCUO 3PRNA 4AYMC 4FT6A 4LSHA 2JMMA 3LK2B 8PRNA 3AA0A 5PRNA 4AFKA 3NJTA 1OPFA 5G3AA 2KDYA 1GFOA 1H6S1 2KC0A 4PUXA 3LK2A 3WI4A 3PGRA 3HW9A 1HXUA 3PF1A 2R4LA 3PORA 3GP6A 5DL5A 4U9CA 3SYSA 5H2FO 3DWOX 3VY9X 4FRXA 4FZNA 4RJWA 1BH3A 2PRNA 3JTYA 3AA7A 4KR8A 4AYID 1ZHTA 4UB8O 2ZFGA 4K3BA 2WVPA 2ODJA 4GF4A 4FZMA 2ERVA 4AZLA 4E1SA 4BUMX 3HOEA 2QTKA 4G75A 4AKMA 1QJPA 2XE3A 4JFBA 2FGQX 2XG6A 2F1TA 5TISO 5IYUA 6PRNA 3BRYA 4GHBA 4E1TA 2AXTO 5B5EO 4XNLA 2JQYA 5ADXK 4JCHA 5D5DA 5T5FA 4AYDC 2Y2XA 5FVNA 4QQ1A 4LSIA 1MM4A 3POXA 3SY7A 3NSGA 3PGUA 4GCSA 2Y7SA 1GFNA 4O3YA 4RL9A 2F1CX 4O4XA 2MHLA 5DL7A 2F1VA 2KXPB 1GFQA 2N2LA 4FSPA 1QJ8A 2XTQA 4FUVA 4K3CA 4UB6O 4FSOA 4AKRB 4AYNA 3PQSA
chains in the Genus database with same CATH topology

1Q9GA 2Y0KA 4FOZA 2KXPA 3O0EA 4AKRA 1ZHWA 1HXTA 2X27X 1BXWA 5G26A 2XE5A 3SZDA 3PQUA 3POQA 1E54A 4N58A 3AAAB 4RJXA 3RBHA 3T24A 5ADXL 2LFUA 1OSMA 3C5OA 3A2SX 3AAAA 1THQA 4D64A 1ORMA 4KRAA 4KR4A 5GV0A 3AA6B 2PORA 4AYEC 1ZHYA 1PHOA 3LK3B 2OMFA 1GFPA 4FRTA 4G76A 5DL8A 1HXXA 3VZTX 2N2MA 2FGRA 3SY9A 3LK3A 2ZLDA 3QRCA 3T20A 2J4UP 2M07A 3KVDD 2Y0LA 5DL6A 4GCQA 3LK42 4GCPA 4C69X 3SZVA 1IZNB 3QRAA 3VE2A 3TZGA 1MM5A 1PRNA 4FZLA 2YNKA 4D65A 3EMNX 1IZNA 1P4TA 2MNHA 3AA1B 4O4UA 4RLCA 1YS5A 3UU2A 2XE2A 3WI5A 2GE4A 2O4VA 4O49A 2KZ7B 3AA0B 2M06A 1BT9A 3AAEB 3G7GA 3DA3A 4O3WA 1ZHXA 3VY8X 3UPGA 4FMSA 2KZ7A 3POUA 3AAEA 2YPVA 1MPFA 4O3XB 4LSEA 3VZUX 4B61A 3AA7B 3AA6A 3VE1A 2K0LA 2J1NA 5JDPA 2W80C 3UAQA 3T0SA 2Y0HA 1G90A 4F4BA 1QJ9A 1ZHZA 5EE2A 4FESA 5AFUL 1GFMA 3DA4A 2XTRA 3LK41 2XMXA 4AUIA 4XNKA 4N59A 4O3ZA 4LSFA 2K4TA 3VZWX 1Q9FA 4RLBA 2W81C 5AFUK 4D5UA 3V8UA 3HWBA 4Z3TA 7PRNA 3K19A 3SYBA 2LHFA 3HOLA 3FYXA 2XE1A 3AA1A 3PRNA 4AYMC 4FT6A 4LSHA 2JMMA 3LK2B 8PRNA 3AA0A 5PRNA 4AFKA 1OPFA 2KDYA 1GFOA 1H6S1 2KC0A 4PUXA 3LK2A 3WI4A 3HW9A 1HXUA 3PORA 3GP6A 5DL5A 4U9CA 3SYSA 3VY9X 4FRXA 4FZNA 4RJWA 1BH3A 2PRNA 3JTYA 3AA7A 4KR8A 4AYID 1ZHTA 2ZFGA 4AZLA 2ODJA 4GF4A 4FZMA 2ERVA 4E1SA 4BUMX 3HOEA 2QTKA 4G75A 4AKMA 1QJPA 2XE3A 4JFBA 2FGQX 2XG6A 2F1TA 5IYUA 6PRNA 4GHBA 4E1TA 4XNLA 5ADXK 4JCHA 5D5DA 5T5FA 4AYDC 2Y2XA 5FVNA 4QQ1A 4LSIA 1MM4A 3POXA 3SY7A 3NSGA 4GCSA 4O3YA 2Y7SA 1GFNA 4RL9A 5DL7A 4O4XA 2MHLA 2F1VA 2KXPB 1GFQA 2N2LA 4FSPA 1QJ8A 2XTQA 4FUVA 4AKRB 4FSOA 4AYNA 3PQSA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2W80 C;  3UAQ A;  4U9C A;  4AYN A;  3KVD D;  5EE2 A;  4AYI D;  3PQU A;  3VE2 A;  4O3Z A;  3HOE A;  2W81 C;  2LFU A;  3V8U A;  4O4U A;  1YS5 A;  4O49 A;  4Z3T A;  4AYD C;  5T5F A;  3HOL A;  4O3W A;  4QQ1 A;  4O3Y A;  4AYE C;  2Y7S A;  4AYM C;  2YPV A;  4O4X A;  4O3X B;  2KDY A;  2KC0 A;  3VE1 A;  3PQS A; 
#chains in the Genus database with same CATH topology
 1Q9G A;  2Y0K A;  4FOZ A;  4C00 A;  2KXP A;  3O0E A;  4AKR A;  1ZHW A;  1HXT A;  3WU2 O;  2X27 X;  1BXW A;  5G26 A;  2XE5 A;  3SZD A;  4FQE A;  3PQU A;  3POQ A;  1T16 A;  1E54 A;  4N58 A;  3AAA B;  4RJX A;  3RBH A;  3T24 A;  5ADX L;  2LFU A;  2IWV A;  2R4N A;  4N74 A;  1OSM A;  3C5O A;  3A2S X;  3DWN A;  2R88 A;  3AAA A;  1T1L A;  1THQ A;  4D64 A;  1ORM A;  2R4P A;  3KZI O;  4KRA A;  4KR4 A;  5GV0 A;  3AA6 B;  3BRZ A;  2POR A;  4AYE C;  1ZHY A;  1PHO A;  3A0B O;  3LK3 B;  2OMF A;  1GFP A;  4FRT A;  2R4O A;  4G76 A;  5DL8 A;  5GTI O;  1HXX A;  4CTD A;  3VZT X;  2N2M A;  2FGR A;  3SY9 A;  3LK3 A;  2ZLD A;  3QRC A;  3T20 A;  3A0H O;  2WJQ A;  2J4U P;  2M07 A;  3KVD D;  3DZM A;  2Y0L A;  5DL6 A;  4GCQ A;  3LK4 2;  4GCP A;  4C69 X;  3SZV A;  1IZN B;  3QRA A;  3VE2 A;  3TZG A;  5B66 O;  1MM5 A;  1PRN A;  4FZL A;  2YNK A;  4D65 A;  2WJR A;  3EMN X;  1IZN A;  1P4T A;  2MNH A;  3PGS A;  3AA1 B;  4O4U A;  4RLC A;  1YS5 A;  5G39 A;  2XE2 A;  5KAI O;  2GE4 A;  2O4V A;  4O49 A;  3UU2 A;  2KZ7 B;  3AA0 B;  3WI5 A;  2M06 A;  1BT9 A;  3AAE B;  3G7G A;  3DA3 A;  4O3W A;  1ZHX A;  4IL6 O;  3VY8 X;  3UPG A;  4FMS A;  2KZ7 A;  3POU A;  3AAE A;  2YPV A;  1MPF A;  4O3X B;  4LSE A;  5E79 O;  3VZU X;  4B61 A;  2IWW A;  3AA7 B;  2X9K A;  3AA6 A;  3VE1 A;  2K0L A;  2J1N A;  5JDP A;  4PJ0 O;  2W80 C;  2R8A A;  5KAF O;  3T0S A;  2Y0H A;  3UAQ A;  1G90 A;  4F4B A;  1QJ9 A;  1ZHZ A;  5EE2 A;  4FES A;  5AFU L;  1GFM A;  3BS0 A;  3DA4 A;  2XTR A;  3LK4 1;  2XMX A;  4AUI A;  2R89 A;  4N59 A;  4O3Z A;  4LSF A;  4XNK A;  2K4T A;  3VZW X;  1Q9F A;  4RLB A;  2W81 C;  5G38 A;  4D5U A;  3V8U A;  5AFU K;  4PR7 A;  4C4V B;  3HWB A;  4Z3T A;  7PRN A;  4N75 A;  3K19 A;  3SYB A;  1S5L O;  2LHF A;  3HOL A;  3FYX A;  5GTH O;  4C4V A;  2XE1 A;  3AA1 A;  3JCU O;  3PRN A;  4AYM C;  4FT6 A;  4LSH A;  2JMM A;  3LK2 B;  8PRN A;  3AA0 A;  5PRN A;  4AFK A;  3NJT A;  1OPF A;  5G3A A;  2KDY A;  1GFO A;  1H6S 1;  2KC0 A;  4PUX A;  3LK2 A;  3WI4 A;  3PGR A;  3HW9 A;  1HXU A;  3PF1 A;  2R4L A;  3POR A;  3GP6 A;  5DL5 A;  4U9C A;  3SYS A;  5H2F O;  3DWO X;  3VY9 X;  4FRX A;  4FZN A;  4RJW A;  1BH3 A;  2PRN A;  3JTY A;  3AA7 A;  4KR8 A;  4AYI D;  1ZHT A;  4UB8 O;  2ZFG A;  4K3B A;  2WVP A;  2ODJ A;  4GF4 A;  4FZM A;  2ERV A;  4AZL A;  4E1S A;  4BUM X;  3HOE A;  2QTK A;  4G75 A;  4AKM A;  1QJP A;  2XE3 A;  4JFB A;  2FGQ X;  2XG6 A;  2F1T A;  5TIS O;  5IYU A;  6PRN A;  3BRY A;  4GHB A;  4E1T A;  2AXT O;  5B5E O;  4XNL A;  2JQY A;  5ADX K;  4JCH A;  5D5D A;  5T5F A;  4AYD C;  2Y2X A;  5FVN A;  4QQ1 A;  4LSI A;  1MM4 A;  3POX A;  3SY7 A;  3NSG A;  3PGU A;  4GCS A;  2Y7S A;  1GFN A;  4O3Y A;  4RL9 A;  2F1C X;  4O4X A;  2MHL A;  5DL7 A;  2F1V A;  2KXP B;  1GFQ A;  2N2L A;  4FSP A;  1QJ8 A;  2XTQ A;  4FUV A;  4K3C A;  4UB6 O;  4FSO A;  4AKR B;  4AYN A;  3PQS A; 
#chains in the Genus database with same CATH homology
 1Q9G A;  2Y0K A;  4FOZ A;  2KXP A;  3O0E A;  4AKR A;  1ZHW A;  1HXT A;  2X27 X;  1BXW A;  5G26 A;  2XE5 A;  3SZD A;  3PQU A;  3POQ A;  1E54 A;  4N58 A;  3AAA B;  4RJX A;  3RBH A;  3T24 A;  5ADX L;  2LFU A;  1OSM A;  3C5O A;  3A2S X;  3AAA A;  1THQ A;  4D64 A;  1ORM A;  4KRA A;  4KR4 A;  5GV0 A;  3AA6 B;  2POR A;  4AYE C;  1ZHY A;  1PHO A;  3LK3 B;  2OMF A;  1GFP A;  4FRT A;  4G76 A;  5DL8 A;  1HXX A;  3VZT X;  2N2M A;  2FGR A;  3SY9 A;  3LK3 A;  2ZLD A;  3QRC A;  3T20 A;  2J4U P;  2M07 A;  3KVD D;  2Y0L A;  5DL6 A;  4GCQ A;  3LK4 2;  4GCP A;  4C69 X;  3SZV A;  1IZN B;  3QRA A;  3VE2 A;  3TZG A;  1MM5 A;  1PRN A;  4FZL A;  2YNK A;  4D65 A;  3EMN X;  1IZN A;  1P4T A;  2MNH A;  3AA1 B;  4O4U A;  4RLC A;  1YS5 A;  3UU2 A;  2XE2 A;  3WI5 A;  2GE4 A;  2O4V A;  4O49 A;  2KZ7 B;  3AA0 B;  2M06 A;  1BT9 A;  3AAE B;  3G7G A;  3DA3 A;  4O3W A;  1ZHX A;  3VY8 X;  3UPG A;  4FMS A;  2KZ7 A;  3POU A;  3AAE A;  2YPV A;  1MPF A;  4O3X B;  4LSE A;  3VZU X;  4B61 A;  3AA7 B;  3AA6 A;  3VE1 A;  2K0L A;  2J1N A;  5JDP A;  2W80 C;  3UAQ A;  3T0S A;  2Y0H A;  1G90 A;  4F4B A;  1QJ9 A;  1ZHZ A;  5EE2 A;  4FES A;  5AFU L;  1GFM A;  3DA4 A;  2XTR A;  3LK4 1;  2XMX A;  4AUI A;  4XNK A;  4N59 A;  4O3Z A;  4LSF A;  2K4T A;  3VZW X;  1Q9F A;  4RLB A;  2W81 C;  5AFU K;  4D5U A;  3V8U A;  3HWB A;  4Z3T A;  7PRN A;  3K19 A;  3SYB A;  2LHF A;  3HOL A;  3FYX A;  2XE1 A;  3AA1 A;  3PRN A;  4AYM C;  4FT6 A;  4LSH A;  2JMM A;  3LK2 B;  8PRN A;  3AA0 A;  5PRN A;  4AFK A;  1OPF A;  2KDY A;  1GFO A;  1H6S 1;  2KC0 A;  4PUX A;  3LK2 A;  3WI4 A;  3HW9 A;  1HXU A;  3POR A;  3GP6 A;  5DL5 A;  4U9C A;  3SYS A;  3VY9 X;  4FRX A;  4FZN A;  4RJW A;  1BH3 A;  2PRN A;  3JTY A;  3AA7 A;  4KR8 A;  4AYI D;  1ZHT A;  2ZFG A;  4AZL A;  2ODJ A;  4GF4 A;  4FZM A;  2ERV A;  4E1S A;  4BUM X;  3HOE A;  2QTK A;  4G75 A;  4AKM A;  1QJP A;  2XE3 A;  4JFB A;  2FGQ X;  2XG6 A;  2F1T A;  5IYU A;  6PRN A;  4GHB A;  4E1T A;  4XNL A;  5ADX K;  4JCH A;  5D5D A;  5T5F A;  4AYD C;  2Y2X A;  5FVN A;  4QQ1 A;  4LSI A;  1MM4 A;  3POX A;  3SY7 A;  3NSG A;  4GCS A;  4O3Y A;  2Y7S A;  1GFN A;  4RL9 A;  5DL7 A;  4O4X A;  2MHL A;  2F1V A;  2KXP B;  1GFQ A;  2N2L A;  4FSP A;  1QJ8 A;  2XTQ A;  4FUV A;  4AKR B;  4FSO A;  4AYN A;  3PQS A;

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similar chains in the Genus database (?% sequence similarity)

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#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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5EE2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization