5G39A

Psbo subunit of photosystem ii, beta barrel domain at 297k, ph 6
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
172
structure length
172
Chain Sequence
CPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKENGEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVNGTKGQISLNVAKVDGRTGEIAGTFESEQLSNGHEVKIQGVFYASIEPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystallographic and Computational Analysis of the Barrel Part of the Psbo Protein of Photosystem II -Carboxylate-Water Clusters as Putative Proton Transfer Relays and Structural Switches
pubmed doi rcsb
molecule tags Photosynthesis
source organism Thermosynechococcus elongatus
molecule keywords PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE
total genus 35
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2016-04-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 5g39A00
5KAFO 5H2FO 4IL6O 5GTIO 5B5EO 5E79O 4UB8O 5G38A 3JCUO 3WU2O 5GTHO 4PJ0O 5G39A 3KZIO 5KAIO 2AXTO 5TISO 1S5LO 4UB6O 5G3AA 3A0BO 3A0HO 5B66O
chains in the Genus database with same CATH superfamily
1MM4A 5H2FO 4D65A 4C4VB 2J1NA 2R89A 5FVNA 3SZVA 4AYID 3DWOX 4UB8O 4N75A 5E79O 5AFUK 2YPVA 2OMFA 3SYBA 4K3CA 2PRNA 1OPFA 2LHFA 3PGRA 4RLBA 4BUMX 4GCQA 5JDPA 2N2LA 4FESA 3AA1B 3NJTA 4AYDC 1G90A 2K4TA 5DL6A 1HXUA 1T16A 5GTHO 5G39A 1Q9GA 3VZWX 3SYSA 3VY9X 4FUVA 3UU2A 4G76A 5DL5A 5ADXK 5TISO 2IWWA 4GF4A 4KRAA 2R4PA 7PRNA 2M07A 8PRNA 2GE4A 2KXPA 4JFBA 1P4TA 3A2SX 3DA3A 3VY8X 4AUIA 3LK3B 5G3AA 4AKRA 4D64A 2F1CX 2ZLDA 4U9CA 4FT6A 1GFQA 1E54A 4FZLA 4PR7A 2KDYA 3AAAB 3POUA 2JMMA 3BRZA 4AYNA 4N58A 4O3YA 1MM5A 2IWVA 3K19A 2X9KA 2R8AA 2XE2A 5D5DA 2J4UP 3QRCA 4E1SA 2XE5A 1GFMA 2WJRA 4FZNA 4KR4A 3LK2B 3DWNA 4JCHA 4AYMC 1GFOA 2FGRA 2ZFGA 3KVDD 4C4VA 3T0SA 2MNHA 4FRXA 4PJ0O 1QJPA 4GCSA 1PRNA 1IZNB 2O4VA 4AZLA 2LFUA 2KZ7B 5AFUL 3LK41 2WVPA 2AXTO 3AA1A 3PORA 4K3BA 4LSIA 3DA4A 3AA0B 2FGQX 1HXXA 2R4OA 3A0BO 4RLCA 3HWBA 2Y2XA 3AAEB 5T5FA 3PRNA 4AFKA 5B66O 4FQEA 3C5OA 4LSHA 3PF1A 1QJ8A 5GTIO 3BRYA 4O3ZA 2XE1A 3DZMA 4C00A 5ADXL 4O4XA 1HXTA 3LK3A 4F4BA 5G38A 3SZDA 3AA6B 3VE1A 2N2MA 1ZHXA 3GP6A 3AAAA 4FMSA 3AA7B 3POXA 2Y7SA 2ODJA 1T1LA 2XG6A 4C69X 4B61A 4FSPA 2XTQA 3QRAA 3PGUA 2W81C 3PGSA 4N59A 4XNLA 2F1VA 2JQYA 2K0LA 2KC0A 3TZGA 3LK42 3LK2A 4AYEC 3EMNX 1GFPA 1BT9A 5KAIO 3VZTX 2X27X 6PRNA 1Q9FA 2Y0LA 1YS5A 2F1TA 1S5LO 2XMXA 3JTYA 5DL8A 2PORA 3WI5A 3A0HO 1ZHZA 3HOLA 2QTKA 3HOEA 1IZNA 3FYXA 1QJ9A 2Y0KA 4FZMA 4O4UA 2KZ7A 4RL9A 3HW9A 2R4LA 4FSOA 5KAFO 3SY7A 3T20A 4D5UA 4IL6O 4E1TA 2W80C 5EE2A 3AA0A 1THQA 1GFNA 5B5EO 4AKMA 3T24A 4Z3TA 3V8UA 2R4NA 3AAEA 3O0EA 4LSFA 2WJQA 1H6S1 3RBHA 3PQUA 5PRNA 2R88A 2XTRA 4FOZA 4O3XB 1OSMA 3JCUO 4GCPA 4KR8A 1PHOA 5G26A 3WU2O 2KXPB 1MPFA 4GHBA 4LSEA 5DL7A 3UAQA 3SY9A 3POQA 4O49A 4QQ1A 4RJXA 3VE2A 4AKRB 3AA6A 3KZIO 4G75A 4PUXA 2XE3A 4XNKA 3VZUX 3WI4A 4CTDA 1ZHWA 2ERVA 3AA7A 4O3WA 3BS0A 3UPGA 2Y0HA 3G7GA 5GV0A 1ZHTA 1ZHYA 2M06A 2MHLA 1BXWA 5IYUA 1BH3A 4N74A 4UB6O 4RJWA 1ORMA 2YNKA 3NSGA 4FRTA 3PQSA
chains in the Genus database with same CATH topology
5KAFO 5H2FO 4IL6O 5GTIO 5B5EO 5E79O 4UB8O 5G38A 3JCUO 3WU2O 5GTHO 4PJ0O 5G39A 3KZIO 5KAIO 2AXTO 5TISO 1S5LO 4UB6O 5G3AA 3A0BO 3A0HO 5B66O
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KAF O;  5H2F O;  4IL6 O;  5GTI O;  5B5E O;  5E79 O;  4UB8 O;  5G38 A;  3JCU O;  3WU2 O;  5GTH O;  4PJ0 O;  5G39 A;  3KZI O;  5KAI O;  2AXT O;  5TIS O;  1S5L O;  4UB6 O;  5G3A A;  3A0B O;  3A0H O;  5B66 O; 
#chains in the Genus database with same CATH topology
 1MM4 A;  5H2F O;  4D65 A;  4C4V B;  2J1N A;  2R89 A;  5FVN A;  3SZV A;  4AYI D;  3DWO X;  4UB8 O;  4N75 A;  5E79 O;  5AFU K;  2YPV A;  2OMF A;  3SYB A;  4K3C A;  2PRN A;  1OPF A;  2LHF A;  3PGR A;  4RLB A;  4BUM X;  4GCQ A;  5JDP A;  2N2L A;  4FES A;  3AA1 B;  3NJT A;  4AYD C;  1G90 A;  2K4T A;  5DL6 A;  1HXU A;  1T16 A;  5GTH O;  5G39 A;  1Q9G A;  3VZW X;  3SYS A;  3VY9 X;  4FUV A;  3UU2 A;  4G76 A;  5DL5 A;  5ADX K;  5TIS O;  2IWW A;  4GF4 A;  4KRA A;  2R4P A;  7PRN A;  2M07 A;  8PRN A;  2GE4 A;  2KXP A;  4JFB A;  1P4T A;  3A2S X;  3DA3 A;  3VY8 X;  4AUI A;  3LK3 B;  5G3A A;  4AKR A;  4D64 A;  2F1C X;  2ZLD A;  4U9C A;  4FT6 A;  1GFQ A;  1E54 A;  4FZL A;  4PR7 A;  2KDY A;  3AAA B;  3POU A;  2JMM A;  3BRZ A;  4AYN A;  4N58 A;  4O3Y A;  1MM5 A;  2IWV A;  3K19 A;  2X9K A;  2R8A A;  2XE2 A;  5D5D A;  2J4U P;  3QRC A;  4E1S A;  2XE5 A;  1GFM A;  2WJR A;  4FZN A;  4KR4 A;  3LK2 B;  3DWN A;  4JCH A;  4AYM C;  1GFO A;  2FGR A;  2ZFG A;  3KVD D;  4C4V A;  3T0S A;  2MNH A;  4FRX A;  4PJ0 O;  1QJP A;  4GCS A;  1PRN A;  1IZN B;  2O4V A;  4AZL A;  2LFU A;  2KZ7 B;  5AFU L;  3LK4 1;  2WVP A;  2AXT O;  3AA1 A;  3POR A;  4K3B A;  4LSI A;  3DA4 A;  3AA0 B;  2FGQ X;  1HXX A;  2R4O A;  3A0B O;  4RLC A;  3HWB A;  2Y2X A;  3AAE B;  5T5F A;  3PRN A;  4AFK A;  5B66 O;  4FQE A;  3C5O A;  4LSH A;  3PF1 A;  1QJ8 A;  5GTI O;  3BRY A;  4O3Z A;  2XE1 A;  3DZM A;  4C00 A;  5ADX L;  4O4X A;  1HXT A;  3LK3 A;  4F4B A;  5G38 A;  3SZD A;  3AA6 B;  3VE1 A;  2N2M A;  1ZHX A;  3GP6 A;  3AAA A;  4FMS A;  3AA7 B;  3POX A;  2Y7S A;  2ODJ A;  1T1L A;  2XG6 A;  4C69 X;  4B61 A;  4FSP A;  2XTQ A;  3QRA A;  3PGU A;  2W81 C;  3PGS A;  4N59 A;  4XNL A;  2F1V A;  2JQY A;  2K0L A;  2KC0 A;  3TZG A;  3LK4 2;  3LK2 A;  4AYE C;  3EMN X;  1GFP A;  1BT9 A;  5KAI O;  3VZT X;  2X27 X;  6PRN A;  1Q9F A;  2Y0L A;  1YS5 A;  2F1T A;  1S5L O;  2XMX A;  3JTY A;  5DL8 A;  2POR A;  3WI5 A;  3A0H O;  1ZHZ A;  3HOL A;  2QTK A;  3HOE A;  1IZN A;  3FYX A;  1QJ9 A;  2Y0K A;  4FZM A;  4O4U A;  2KZ7 A;  4RL9 A;  3HW9 A;  2R4L A;  4FSO A;  5KAF O;  3SY7 A;  3T20 A;  4D5U A;  4IL6 O;  4E1T A;  2W80 C;  5EE2 A;  3AA0 A;  1THQ A;  1GFN A;  5B5E O;  4AKM A;  3T24 A;  4Z3T A;  3V8U A;  2R4N A;  3AAE A;  3O0E A;  4LSF A;  2WJQ A;  1H6S 1;  3RBH A;  3PQU A;  5PRN A;  2R88 A;  2XTR A;  4FOZ A;  4O3X B;  1OSM A;  3JCU O;  4GCP A;  4KR8 A;  1PHO A;  5G26 A;  3WU2 O;  2KXP B;  1MPF A;  4GHB A;  4LSE A;  5DL7 A;  3UAQ A;  3SY9 A;  3POQ A;  4O49 A;  4QQ1 A;  4RJX A;  3VE2 A;  4AKR B;  3AA6 A;  3KZI O;  4G75 A;  4PUX A;  2XE3 A;  4XNK A;  3VZU X;  3WI4 A;  4CTD A;  1ZHW A;  2ERV A;  3AA7 A;  4O3W A;  3BS0 A;  3UPG A;  2Y0H A;  3G7G A;  5GV0 A;  1ZHT A;  1ZHY A;  2M06 A;  2MHL A;  1BXW A;  5IYU A;  1BH3 A;  4N74 A;  4UB6 O;  4RJW A;  1ORM A;  2YNK A;  3NSG A;  4FRT A;  3PQS A; 
#chains in the Genus database with same CATH homology
 5KAF O;  5H2F O;  4IL6 O;  5GTI O;  5B5E O;  5E79 O;  4UB8 O;  5G38 A;  3JCU O;  3WU2 O;  5GTH O;  4PJ0 O;  5G39 A;  3KZI O;  5KAI O;  2AXT O;  5TIS O;  1S5L O;  4UB6 O;  5G3A A;  3A0B O;  3A0H O;  5B66 O; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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