The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
54
|
sequence length |
243
|
structure length |
243
|
Chain Sequence |
TLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
pubmed doi rcsb |
| molecule tags |
Photosynthesis
|
| molecule keywords |
Photosystem II D1 protein
|
| total genus |
54
|
| structure length |
243
|
| sequence length |
243
|
| chains with identical sequence |
o
|
| ec nomenclature | |
| pdb deposition date | 2016-08-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| O | PF01716 | MSP | Manganese-stabilising protein / photosystem II polypeptide |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Porin | Photosystem II, cytochrome c-550 precursor | ||
| Alpha Beta | 2-Layer Sandwich | photosynthetic oxygen evolving center fold | photosynthetic oxygen evolving center domain |
#chains in the Genus database with same CATH superfamily 5H2F O; 5GTH O; 5E79 O; 4UB6 O; 5G3A A; 5B5E O; 3JCU O; 3KZI O; 3A0B O; 5G38 A; 5B66 O; 3A0H O; 4UB8 O; 1S5L O; 4IL6 O; 5KAF O; 5TIS O; 5G39 A; 5GTI O; 2AXT O; 3WU2 O; 4PJ0 O; 5KAI O; #chains in the Genus database with same CATH topology 4O3X B; 2N2L A; 3RBH A; 4FOZ A; 4RL9 A; 2LHF A; 4E1S A; 5G26 A; 1ZHZ A; 2KZ7 B; 5PRN A; 4UB6 O; 4GCP A; 2MNH A; 1ZHT A; 1GFO A; 2KXP A; 2M06 A; 3FYX A; 3LK3 A; 4FUV A; 4N75 A; 4LSE A; 3LK2 A; 1Q9F A; 4B61 A; 4O3W A; 3JCU O; 1G90 A; 4K3C A; 3AA7 B; 4RLC A; 3SYB A; 5EE2 A; 2N2M A; 2ZFG A; 2PRN A; 1ZHY A; 4JFB A; 2FGQ X; 3DZM A; 1MM4 A; 4AUI A; 5B66 O; 2ZLD A; 4FSO A; 3VZW X; 3AA0 A; 5AFU L; 1ZHW A; 1T16 A; 4C69 X; 2R89 A; 4XNK A; 5GTI O; 4GCS A; 5TIS O; 3POX A; 2R4P A; 3G7G A; 4C00 A; 2JMM A; 4C4V A; 5IYU A; 4CTD A; 2O4V A; 3A2S X; 3VY9 X; 4GHB A; 4D5U A; 5GV0 A; 5JDP A; 4O4U A; 3PQS A; 4FRT A; 5E79 O; 3PQU A; 3QRC A; 3AAE A; 2F1V A; 1H6S 1; 2WJR A; 4GCQ A; 5T5F A; 5G3A A; 1GFQ A; 2Y0L A; 3POR A; 3PRN A; 4G75 A; 4XNL A; 3SZD A; 2W81 C; 3T20 A; 3LK4 1; 4D65 A; 6PRN A; 1IZN A; 1PRN A; 2KDY A; 3POQ A; 2K0L A; 2XMX A; 4FRX A; 4N59 A; 3VZT X; 2WJQ A; 8PRN A; 2R4O A; 4KR4 A; 5DL5 A; 2IWV A; 3T24 A; 2K4T A; 2F1T A; 3HW9 A; 3PGS A; 4GF4 A; 4LSH A; 4N58 A; 5DL7 A; 3VE2 A; 3BS0 A; 1S5L O; 4QQ1 A; 5DL6 A; 4IL6 O; 3VE1 A; 5KAF O; 3AA1 B; 2F1C X; 2WVP A; 3BRY A; 4AKR A; 3DWN A; 4C4V B; 3JTY A; 3AAA A; 5ADX L; 3AA6 A; 4AKM A; 2JQY A; 3WU2 O; 1P4T A; 2XE1 A; 3SZV A; 1GFP A; 1GFM A; 3O0E A; 2R88 A; 4AFK A; 4RJX A; 1QJ9 A; 2MHL A; 4E1T A; 5DL8 A; 2LFU A; 3HOL A; 3KVD D; 3EMN X; 4BUM X; 5AFU K; 1QJP A; 3DWO X; 2GE4 A; 3HOE A; 4G76 A; 4AYN A; 3LK3 B; 5GTH O; 2KXP B; 4O4X A; 3WI4 A; 3LK2 B; 3PF1 A; 5D5D A; 4AYD C; 4FZM A; 4AZL A; 2YNK A; 1THQ A; 3KZI O; 2OMF A; 1OSM A; 4LSF A; 4PUX A; 3AA0 B; 3QRA A; 1T1L A; 3GP6 A; 2XE3 A; 2ERV A; 4FT6 A; 3A0H O; 3T0S A; 3VY8 X; 2W80 C; 4O49 A; 3AAA B; 4FQE A; 3AA6 B; 4FZN A; 3POU A; 3BRZ A; 3DA4 A; 2Y2X A; 4KR8 A; 2M07 A; 3HWB A; 2X9K A; 1Q9G A; 2J1N A; 2X27 X; 4O3Y A; 4PJ0 O; 1PHO A; 5FVN A; 4D64 A; 4AYI D; 4K3B A; 1ORM A; 4JCH A; 2Y0H A; 4FZL A; 1BXW A; 4FSP A; 3LK4 2; 4FMS A; 4N74 A; 2Y0K A; 3AAE B; 3VZU X; 1HXT A; 2FGR A; 2POR A; 3PGR A; 4RJW A; 1E54 A; 1MPF A; 2R8A A; 3SY9 A; 2KC0 A; 2XE2 A; 4AYM C; 1MM5 A; 2QTK A; 1QJ8 A; 4Z3T A; 4PR7 A; 1BT9 A; 2KZ7 A; 3K19 A; 4U9C A; 1IZN B; 1OPF A; 2R4L A; 4FES A; 3UU2 A; 1ZHX A; 5B5E O; 2IWW A; 2ODJ A; 3UAQ A; 2XG6 A; 3TZG A; 1YS5 A; 5H2F O; 2XTR A; 3A0B O; 4RLB A; 2Y7S A; 3DA3 A; 4LSI A; 3AA7 A; 3NSG A; 4O3Z A; 5G38 A; 3SY7 A; 7PRN A; 5ADX K; 1GFN A; 3C5O A; 4UB8 O; 2YPV A; 3SYS A; 4AKR B; 1HXX A; 3UPG A; 1HXU A; 3NJT A; 3PGU A; 5G39 A; 2R4N A; 3AA1 A; 3V8U A; 2AXT O; 3WI5 A; 2XTQ A; 5KAI O; 4F4B A; 2J4U P; 4KRA A; 4AYE C; 1BH3 A; 2XE5 A; #chains in the Genus database with same CATH homology 5H2F O; 5GTH O; 5E79 O; 4UB6 O; 5G3A A; 5B5E O; 3JCU O; 3KZI O; 3A0B O; 5G38 A; 5B66 O; 3A0H O; 4UB8 O; 1S5L O; 4IL6 O; 5KAF O; 5TIS O; 5G39 A; 5GTI O; 2AXT O; 3WU2 O; 4PJ0 O; 5KAI O;
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