5IYUA

Alge_cim
Total Genus 125
50100150200250300350400020406080100120
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
454
structure length
429
Chain Sequence
EAPKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQSDTGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
50100150200250300350400400300200100
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV15 (368-371)TI'1 (57-60)TI1 (55-58)TIV1 (53-56)TII'1 (81-84)S2 (66-81)S14 (324-333)S3 (84-95)S5 (144-154)TIV2 (95-98)S4 (124-135)TI2 (102-105)TVIII1 (122-125)TIV3 (108-120)TIV8 (265-268)TIV5 (137-140)TI3 (141-144)TIV4 (136-139)S6 (162-173)TIV6 (158-161)TI4 (155-158)S7 (177-186)S9 (219-230)TI5 (174-177)S8 (204-216)3H1 (199-201)TI6 (191-194)TI7 (242-245)TII1 (201-204)S13 (296-319)S10 (239-240)TII3 (236-239)S12 (272-293)TVIII3 (214-217)TII2 (216-219)TVIII4 (270-273)TI8 (262-265)TIV7 (260-263)S11 (248-261)TI10 (340-343)TIV9 (292-295)S16 (363-364)3H2 (338-340)TII'2 (388-391)S17 (377-388)TI9 (321-324)TII4 (420-423)TIV14 (367-370)TI11 (355-358)S18 (392-403)TIV11 (347-350)S15 (353-354)TIV16 (374-377)TIV12 (359-362)TVIII5 (403-406)TI12 (405-408)S1 (42-54)TIV13 (364-367)S19 (425-437)Updating...
connected with : NaN
molecule tags Membrane protein
source organism Pseudomonas aeruginosa pao1
publication title The cubicon method for concentrating membrane proteins in the cubic mesophase.
pubmed doi rcsb
molecule keywords Alginate production protein AlgE
total genus 125
structure length 429
sequence length 454
ec nomenclature
pdb deposition date 2016-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 5iyuA00
4AFKA 4B61A 4XNLA 5IYUA 3RBHA 5D5DA 4AZLA 4XNKA
chains in the Genus database with same CATH superfamily
4AYMC 2ZFGA 3PRNA 2LFUA 4O4UA 2XG6A 1GFPA 1E54A 2R4PA 1IZNB 4O4XA 3AAAA 5JDPA 3AA7B 4O3ZA 5B66O 4JFBA 4XNLA 4E1TA 2R88A 3AA1B 4LSEA 5G38A 4AYEC 2Y0KA 1GFOA 2QTKA 5PRNA 3NSGA 4PUXA 2LHFA 5DL7A 2J1NA 2WJQA 3T0SA 4C00A 3HOEA 4K3CA 4FMSA 2F1CX 3LK3A 4KR4A 3VY9X 2XMXA 3WI4A 2XE2A 3O0EA 4G76A 2JMMA 5AFUK 4AKRB 4PJ0O 2PORA 2XE1A 4RLBA 4FESA 5FVNA 5G3AA 1ORMA 3DWNA 3JCUO 3SYBA 2YNKA 1S5LO 2Y2XA 4RLCA 2KXPA 1OSMA 3BS0A 5ADXL 5IYUA 5EE2A 2XE5A 5GTHO 3HWBA 1QJ8A 2Y0HA 2JQYA 3K19A 4Z3TA 2X27X 2F1TA 4FSPA 3VZWX 4FZNA 6PRNA 4FRXA 4C4VB 3VZUX 2R8AA 1GFQA 3LK2A 5B5EO 2R4OA 2XTRA 3AAEA 5T5FA 3AAAB 1ZHYA 2OMFA 4GF4A 2N2MA 4RL9A 3VY8X 2J4UP 4UB8O 5G26A 4LSHA 5D5DA 5KAFO 1G90A 1HXTA 4FZLA 2MNHA 1Q9GA 4K3BA 4UB6O 3WI5A 4N74A 4AUIA 3DZMA 3DA3A 4G75A 3AA7A 1PHOA 1QJPA 3POXA 8PRNA 4N59A 3AA1A 2W81C 3SYSA 3POQA 2KZ7A 2R89A 2Y7SA 2KC0A 3AA0A 4GCQA 3HW9A 5DL8A 2KDYA 5TISO 4RJXA 4XNKA 3BRZA 4FUVA 3AA6B 5AFUL 3UPGA 3EMNX 4FT6A 4KR8A 5DL5A 1HXUA 3SY9A 3NJTA 3TZGA 2KXPB 3PGSA 3GP6A 2K0LA 1P4TA 3PGRA 1ZHZA 1MM4A 2FGQX 3C5OA 4RJWA 2Y0LA 1Q9FA 5G39A 3UU2A 4E1SA 7PRNA 5DL6A 4F4BA 2PRNA 1GFMA 4D65A 2ERVA 3FYXA 4FOZA 3HOLA 4D64A 5GTIO 1ZHWA 3JTYA 3SZVA 4O3YA 4AYNA 1BXWA 4FQEA 4AKMA 2WJRA 3PQUA 4O49A 3VZTX 1IZNA 3A0BO 3PF1A 2K4TA 2R4LA 2WVPA 1QJ9A 3AAEB 3BRYA 4GHBA 4O3XB 4FSOA 2F1VA 3SY7A 1ZHXA 4C4VA 4AFKA 1GFNA 4JCHA 3POUA 2M06A 2IWWA 4B61A 5E79O 1MM5A 5KAIO 2XTQA 4N75A 3UAQA 1OPFA 4GCPA 3T20A 3LK3B 4LSFA 1ZHTA 3A2SX 3DWOX 4O3WA 2ZLDA 2IWVA 4QQ1A 4U9CA 3DA4A 2N2LA 4IL6O 2M07A 2R4NA 4C69X 1T1LA 4LSIA 4BUMX 3PQSA 5H2FO 3SZDA 3KZIO 3V8UA 3PORA 3WU2O 2FGRA 2KZ7B 2W80C 4N58A 3AA0B 3A0HO 4KRAA 4AKRA 1H6S1 1THQA 2AXTO 3G7GA 1HXXA 4D5UA 3PGUA 3LK42 1T16A 2ODJA 2MHLA 4FZMA 4PR7A 2XE3A 5ADXK 1PRNA 2YPVA 4AYDC 4AZLA 2O4VA 3QRCA 4GCSA 1BT9A 2GE4A 3VE1A 3T24A 2X9KA 4CTDA 1MPFA 3KVDD 3VE2A 1BH3A 3AA6A 4FRTA 3RBHA 4AYID 3LK41 3LK2B 5GV0A 3QRAA 1YS5A
chains in the Genus database with same CATH topology
4AYMC 2ZFGA 3PRNA 2LFUA 4O4UA 2XG6A 1GFPA 1E54A 1IZNB 4O4XA 3AAAA 3AA7B 4O3ZA 4JFBA 4XNLA 4E1TA 3AA1B 4LSEA 4AYEC 2Y0KA 1GFOA 2QTKA 5PRNA 3NSGA 4PUXA 2LHFA 5DL7A 2J1NA 3T0SA 3HOEA 4FMSA 3LK3A 4KR4A 3VY9X 2XMXA 3WI4A 2XE2A 3O0EA 4G76A 2JMMA 5AFUK 4AKRB 2PORA 2XE1A 4RLBA 4FESA 5FVNA 1ORMA 3SYBA 2YNKA 2Y2XA 4RLCA 2KXPA 1OSMA 5ADXL 5IYUA 5EE2A 2XE5A 3HWBA 1QJ8A 2Y0HA 3K19A 4Z3TA 2X27X 2F1TA 4FSPA 3VZWX 4FZNA 6PRNA 4FRXA 3VZUX 1GFQA 3LK2A 2XTRA 3AAEA 5T5FA 3AAAB 1ZHYA 2OMFA 4GF4A 2N2MA 4RL9A 3VY8X 2J4UP 5G26A 4LSHA 5D5DA 1G90A 1HXTA 4FZLA 2MNHA 1Q9GA 3WI5A 4AUIA 3DA3A 4G75A 3AA7A 1PHOA 1QJPA 3POXA 8PRNA 4N59A 3AA1A 2W81C 3SYSA 3POQA 2KZ7A 2Y7SA 2KC0A 3AA0A 4GCQA 3HW9A 5DL8A 2KDYA 4RJXA 4XNKA 5AFUL 4FUVA 3AA6B 3UPGA 3EMNX 4FT6A 4KR8A 5DL5A 1HXUA 3SY9A 2KXPB 3GP6A 2K0LA 1P4TA 1ZHZA 1MM4A 2FGQX 3C5OA 4RJWA 2Y0LA 1Q9FA 3UU2A 4E1SA 7PRNA 5GV0A 5DL6A 4F4BA 2PRNA 1GFMA 4D65A 2ERVA 3FYXA 4FOZA 3HOLA 4D64A 1ZHWA 3JTYA 3SZVA 4O3YA 4AYNA 1BXWA 4AKMA 3PQUA 4O49A 3VZTX 1IZNA 2K4TA 3AAEB 1QJ9A 4O3XB 4GHBA 4FSOA 2F1VA 3SY7A 1ZHXA 4AFKA 1GFNA 4JCHA 3POUA 2M06A 4B61A 1MM5A 3T20A 2XTQA 3UAQA 1OPFA 4GCPA 3LK3B 4LSFA 1ZHTA 3A2SX 4O3WA 4QQ1A 2ZLDA 4U9CA 3TZGA 4C69X 3DA4A 2N2LA 2M07A 4LSIA 4BUMX 3PQSA 3SZDA 3V8UA 3PORA 2FGRA 2KZ7B 2W80C 4N58A 3AA0B 4KRAA 4AKRA 1H6S1 1THQA 3G7GA 4D5UA 1HXXA 3LK42 2ODJA 2MHLA 4FZMA 2XE3A 5ADXK 1PRNA 2YPVA 4AYDC 4AZLA 2O4VA 3QRCA 4GCSA 1BT9A 2GE4A 3VE1A 3T24A 5JDPA 1MPFA 3KVDD 3VE2A 1BH3A 3AA6A 4FRTA 3RBHA 4AYID 3LK41 3LK2B 3QRAA 1YS5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AFK A;  4B61 A;  4XNL A;  5IYU A;  3RBH A;  5D5D A;  4AZL A;  4XNK A; 
#chains in the Genus database with same CATH topology
 4AYM C;  2ZFG A;  3PRN A;  2LFU A;  4O4U A;  2XG6 A;  1GFP A;  1E54 A;  2R4P A;  1IZN B;  4O4X A;  3AAA A;  5JDP A;  3AA7 B;  4O3Z A;  5B66 O;  4JFB A;  4XNL A;  4E1T A;  2R88 A;  3AA1 B;  4LSE A;  5G38 A;  4AYE C;  2Y0K A;  1GFO A;  2QTK A;  5PRN A;  3NSG A;  4PUX A;  2LHF A;  5DL7 A;  2J1N A;  2WJQ A;  3T0S A;  4C00 A;  3HOE A;  4K3C A;  4FMS A;  2F1C X;  3LK3 A;  4KR4 A;  3VY9 X;  2XMX A;  3WI4 A;  2XE2 A;  3O0E A;  4G76 A;  2JMM A;  5AFU K;  4AKR B;  4PJ0 O;  2POR A;  2XE1 A;  4RLB A;  4FES A;  5FVN A;  5G3A A;  1ORM A;  3DWN A;  3JCU O;  3SYB A;  2YNK A;  1S5L O;  2Y2X A;  4RLC A;  2KXP A;  1OSM A;  3BS0 A;  5ADX L;  5IYU A;  5EE2 A;  2XE5 A;  5GTH O;  3HWB A;  1QJ8 A;  2Y0H A;  2JQY A;  3K19 A;  4Z3T A;  2X27 X;  2F1T A;  4FSP A;  3VZW X;  4FZN A;  6PRN A;  4FRX A;  4C4V B;  3VZU X;  2R8A A;  1GFQ A;  3LK2 A;  5B5E O;  2R4O A;  2XTR A;  3AAE A;  5T5F A;  3AAA B;  1ZHY A;  2OMF A;  4GF4 A;  2N2M A;  4RL9 A;  3VY8 X;  2J4U P;  4UB8 O;  5G26 A;  4LSH A;  5D5D A;  5KAF O;  1G90 A;  1HXT A;  4FZL A;  2MNH A;  1Q9G A;  4K3B A;  4UB6 O;  3WI5 A;  4N74 A;  4AUI A;  3DZM A;  3DA3 A;  4G75 A;  3AA7 A;  1PHO A;  1QJP A;  3POX A;  8PRN A;  4N59 A;  3AA1 A;  2W81 C;  3SYS A;  3POQ A;  2KZ7 A;  2R89 A;  2Y7S A;  2KC0 A;  3AA0 A;  4GCQ A;  3HW9 A;  5DL8 A;  2KDY A;  5TIS O;  4RJX A;  4XNK A;  3BRZ A;  4FUV A;  3AA6 B;  5AFU L;  3UPG A;  3EMN X;  4FT6 A;  4KR8 A;  5DL5 A;  1HXU A;  3SY9 A;  3NJT A;  3TZG A;  2KXP B;  3PGS A;  3GP6 A;  2K0L A;  1P4T A;  3PGR A;  1ZHZ A;  1MM4 A;  2FGQ X;  3C5O A;  4RJW A;  2Y0L A;  1Q9F A;  5G39 A;  3UU2 A;  4E1S A;  7PRN A;  5DL6 A;  4F4B A;  2PRN A;  1GFM A;  4D65 A;  2ERV A;  3FYX A;  4FOZ A;  3HOL A;  4D64 A;  5GTI O;  1ZHW A;  3JTY A;  3SZV A;  4O3Y A;  4AYN A;  1BXW A;  4FQE A;  4AKM A;  2WJR A;  3PQU A;  4O49 A;  3VZT X;  1IZN A;  3A0B O;  3PF1 A;  2K4T A;  2R4L A;  2WVP A;  1QJ9 A;  3AAE B;  3BRY A;  4GHB A;  4O3X B;  4FSO A;  2F1V A;  3SY7 A;  1ZHX A;  4C4V A;  4AFK A;  1GFN A;  4JCH A;  3POU A;  2M06 A;  2IWW A;  4B61 A;  5E79 O;  1MM5 A;  5KAI O;  2XTQ A;  4N75 A;  3UAQ A;  1OPF A;  4GCP A;  3T20 A;  3LK3 B;  4LSF A;  1ZHT A;  3A2S X;  3DWO X;  4O3W A;  2ZLD A;  2IWV A;  4QQ1 A;  4U9C A;  3DA4 A;  2N2L A;  4IL6 O;  2M07 A;  2R4N A;  4C69 X;  1T1L A;  4LSI A;  4BUM X;  3PQS A;  5H2F O;  3SZD A;  3KZI O;  3V8U A;  3POR A;  3WU2 O;  2FGR A;  2KZ7 B;  2W80 C;  4N58 A;  3AA0 B;  3A0H O;  4KRA A;  4AKR A;  1H6S 1;  1THQ A;  2AXT O;  3G7G A;  1HXX A;  4D5U A;  3PGU A;  3LK4 2;  1T16 A;  2ODJ A;  2MHL A;  4FZM A;  4PR7 A;  2XE3 A;  5ADX K;  1PRN A;  2YPV A;  4AYD C;  4AZL A;  2O4V A;  3QRC A;  4GCS A;  1BT9 A;  2GE4 A;  3VE1 A;  3T24 A;  2X9K A;  4CTD A;  1MPF A;  3KVD D;  3VE2 A;  1BH3 A;  3AA6 A;  4FRT A;  3RBH A;  4AYI D;  3LK4 1;  3LK2 B;  5GV0 A;  3QRA A;  1YS5 A; 
#chains in the Genus database with same CATH homology
 4AYM C;  2ZFG A;  3PRN A;  2LFU A;  4O4U A;  2XG6 A;  1GFP A;  1E54 A;  1IZN B;  4O4X A;  3AAA A;  3AA7 B;  4O3Z A;  4JFB A;  4XNL A;  4E1T A;  3AA1 B;  4LSE A;  4AYE C;  2Y0K A;  1GFO A;  2QTK A;  5PRN A;  3NSG A;  4PUX A;  2LHF A;  5DL7 A;  2J1N A;  3T0S A;  3HOE A;  4FMS A;  3LK3 A;  4KR4 A;  3VY9 X;  2XMX A;  3WI4 A;  2XE2 A;  3O0E A;  4G76 A;  2JMM A;  5AFU K;  4AKR B;  2POR A;  2XE1 A;  4RLB A;  4FES A;  5FVN A;  1ORM A;  3SYB A;  2YNK A;  2Y2X A;  4RLC A;  2KXP A;  1OSM A;  5ADX L;  5IYU A;  5EE2 A;  2XE5 A;  3HWB A;  1QJ8 A;  2Y0H A;  3K19 A;  4Z3T A;  2X27 X;  2F1T A;  4FSP A;  3VZW X;  4FZN A;  6PRN A;  4FRX A;  3VZU X;  1GFQ A;  3LK2 A;  2XTR A;  3AAE A;  5T5F A;  3AAA B;  1ZHY A;  2OMF A;  4GF4 A;  2N2M A;  4RL9 A;  3VY8 X;  2J4U P;  5G26 A;  4LSH A;  5D5D A;  1G90 A;  1HXT A;  4FZL A;  2MNH A;  1Q9G A;  3WI5 A;  4AUI A;  3DA3 A;  4G75 A;  3AA7 A;  1PHO A;  1QJP A;  3POX A;  8PRN A;  4N59 A;  3AA1 A;  2W81 C;  3SYS A;  3POQ A;  2KZ7 A;  2Y7S A;  2KC0 A;  3AA0 A;  4GCQ A;  3HW9 A;  5DL8 A;  2KDY A;  4RJX A;  4XNK A;  5AFU L;  4FUV A;  3AA6 B;  3UPG A;  3EMN X;  4FT6 A;  4KR8 A;  5DL5 A;  1HXU A;  3SY9 A;  2KXP B;  3GP6 A;  2K0L A;  1P4T A;  1ZHZ A;  1MM4 A;  2FGQ X;  3C5O A;  4RJW A;  2Y0L A;  1Q9F A;  3UU2 A;  4E1S A;  7PRN A;  5GV0 A;  5DL6 A;  4F4B A;  2PRN A;  1GFM A;  4D65 A;  2ERV A;  3FYX A;  4FOZ A;  3HOL A;  4D64 A;  1ZHW A;  3JTY A;  3SZV A;  4O3Y A;  4AYN A;  1BXW A;  4AKM A;  3PQU A;  4O49 A;  3VZT X;  1IZN A;  2K4T A;  3AAE B;  1QJ9 A;  4O3X B;  4GHB A;  4FSO A;  2F1V A;  3SY7 A;  1ZHX A;  4AFK A;  1GFN A;  4JCH A;  3POU A;  2M06 A;  4B61 A;  1MM5 A;  3T20 A;  2XTQ A;  3UAQ A;  1OPF A;  4GCP A;  3LK3 B;  4LSF A;  1ZHT A;  3A2S X;  4O3W A;  4QQ1 A;  2ZLD A;  4U9C A;  3TZG A;  4C69 X;  3DA4 A;  2N2L A;  2M07 A;  4LSI A;  4BUM X;  3PQS A;  3SZD A;  3V8U A;  3POR A;  2FGR A;  2KZ7 B;  2W80 C;  4N58 A;  3AA0 B;  4KRA A;  4AKR A;  1H6S 1;  1THQ A;  3G7G A;  4D5U A;  1HXX A;  3LK4 2;  2ODJ A;  2MHL A;  4FZM A;  2XE3 A;  5ADX K;  1PRN A;  2YPV A;  4AYD C;  4AZL A;  2O4V A;  3QRC A;  4GCS A;  1BT9 A;  2GE4 A;  3VE1 A;  3T24 A;  5JDP A;  1MPF A;  3KVD D;  3VE2 A;  1BH3 A;  3AA6 A;  4FRT A;  3RBH A;  4AYI D;  3LK4 1;  3LK2 B;  3QRA A;  1YS5 A; 
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