The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
32
|
sequence length |
172
|
structure length |
172
|
Chain Sequence |
CPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKENGEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVNGTKGQISLNVAKVDGRTGEIAGTFESEQLSNGHEVKIQGVFYASIEPA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystallographic and Computational Analysis of the Barrel Part of the Psbo Protein of Photosystem II -Carboxylate-Water Clusters as Putative Proton Transfer Relays and Structural Switches
pubmed doi rcsb |
| molecule tags |
Photosynthesis
|
| source organism |
Thermosynechococcus elongatus
|
| molecule keywords |
PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE
|
| total genus |
32
|
| structure length |
172
|
| sequence length |
172
|
| ec nomenclature | |
| pdb deposition date | 2016-04-24 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Porin | Photosystem II, cytochrome c-550 precursor |
#chains in the Genus database with same CATH superfamily 5KAF O; 4PJ0 O; 4IL6 O; 3WU2 O; 3KZI O; 5G38 A; 5GTI O; 3A0H O; 3JCU O; 5TIS O; 2AXT O; 5E79 O; 4UB6 O; 5B5E O; 5G39 A; 5GTH O; 5G3A A; 3A0B O; 1S5L O; 4UB8 O; 5KAI O; 5H2F O; 5B66 O; #chains in the Genus database with same CATH topology 3G7G A; 1H6S 1; 4K3B A; 4E1S A; 3HWB A; 4RJX A; 4RJW A; 2KC0 A; 2K4T A; 1Q9G A; 1Q9F A; 2Y0L A; 3WU2 O; 4Z3T A; 4C00 A; 5D5D A; 1QJP A; 4LSI A; 2Y2X A; 4PUX A; 4PR7 A; 3SZD A; 4FRX A; 4N75 A; 3QRA A; 4XNL A; 5GTI O; 2FGR A; 1GFP A; 3POX A; 2W81 C; 3UU2 A; 5AFU L; 3HOL A; 4RL9 A; 5PRN A; 3LK2 B; 2PRN A; 2OMF A; 3PGR A; 4G75 A; 3AAE A; 2ERV A; 1THQ A; 1ZHZ A; 2MNH A; 3T24 A; 3VZW X; 3AA6 A; 4O3W A; 3AA7 A; 4FUV A; 2F1C X; 2XG6 A; 4N59 A; 4O4X A; 3DA4 A; 4U9C A; 7PRN A; 4AYD C; 2YNK A; 3A0B O; 5H2F O; 2KZ7 A; 5B66 O; 1GFO A; 2IWV A; 3NJT A; 4AKR A; 4FT6 A; 2R4L A; 4D64 A; 3AAE B; 3JTY A; 4RLC A; 3RBH A; 5T5F A; 2MHL A; 2Y0H A; 3WI5 A; 4C4V A; 3AA6 B; 1G90 A; 3KZI O; 3AA7 B; 3SYS A; 2K0L A; 2ODJ A; 1GFN A; 2GE4 A; 1BT9 A; 3PGU A; 1GFM A; 5AFU K; 1PHO A; 2KZ7 B; 2O4V A; 4AFK A; 2IWW A; 5TIS O; 2WJQ A; 2WJR A; 2XTQ A; 3HOE A; 5E79 O; 4KRA A; 4UB6 O; 1GFQ A; 3FYX A; 2R8A A; 3SY9 A; 4AKR B; 2R4O A; 3GP6 A; 3V8U A; 4FQE A; 4JCH A; 1ORM A; 3DA3 A; 3POR A; 5G39 A; 5GTH O; 4CTD A; 4BUM X; 4D5U A; 3DZM A; 2XMX A; 2R4N A; 3VZT X; 2Y7S A; 4GCP A; 2Y0K A; 3UAQ A; 4FZL A; 3PQU A; 4FES A; 4GCS A; 5DL8 A; 4XNK A; 4N58 A; 5ADX K; 1IZN A; 2XE1 A; 4N74 A; 3BRY A; 2JMM A; 4AYN A; 5DL5 A; 4PJ0 O; 4IL6 O; 4LSF A; 5KAF O; 2W80 C; 4LSH A; 4AUI A; 1HXT A; 4FZM A; 4AYE C; 3UPG A; 3VE2 A; 3BS0 A; 2LFU A; 3LK4 2; 3POQ A; 5FVN A; 4C69 X; 2R4P A; 5G38 A; 3DWO X; 3HW9 A; 4AZL A; 3PF1 A; 4FOZ A; 4O4U A; 1MM5 A; 3JCU O; 3KVD D; 3LK4 1; 4AKM A; 3AA1 A; 4KR4 A; 4D65 A; 2AXT O; 1BH3 A; 1BXW A; 1IZN B; 1PRN A; 3T20 A; 1T1L A; 2F1V A; 2YPV A; 5B5E O; 4RLB A; 2F1T A; 4FMS A; 4JFB A; 5IYU A; 1E54 A; 2POR A; 1ZHY A; 3VY8 X; 4FZN A; 4O3Y A; 2M06 A; 2XE5 A; 1QJ8 A; 3LK3 A; 3PRN A; 2M07 A; 1HXU A; 3K19 A; 4O3Z A; 1S5L O; 1MM4 A; 1ZHW A; 3BRZ A; 3PGS A; 3QRC A; 4GCQ A; 4UB8 O; 5DL6 A; 4FSO A; 2JQY A; 3POU A; 2XE2 A; 4FSP A; 3AA1 B; 2X9K A; 3SZV A; 3VE1 A; 2WVP A; 4B61 A; 4FRT A; 2XTR A; 4K3C A; 2J4U P; 5DL7 A; 1MPF A; 3C5O A; 3SY7 A; 3DWN A; 4O49 A; 2KXP A; 3A2S X; 4QQ1 A; 4F4B A; 2N2M A; 2QTK A; 3AA0 A; 3EMN X; 3NSG A; 3A0H O; 1ZHX A; 1P4T A; 3LK3 B; 4C4V B; 2J1N A; 3AAA A; 3PQS A; 1QJ9 A; 1YS5 A; 5EE2 A; 2FGQ X; 4GF4 A; 2N2L A; 2XE3 A; 3TZG A; 4AYM C; 3VY9 X; 4KR8 A; 1T16 A; 4G76 A; 4LSE A; 2R89 A; 3O0E A; 1OSM A; 1HXX A; 5G26 A; 5JDP A; 2KDY A; 3WI4 A; 6PRN A; 1ZHT A; 4O3X B; 2KXP B; 5G3A A; 4AYI D; 3VZU X; 5GV0 A; 3AA0 B; 1OPF A; 2ZLD A; 3T0S A; 2ZFG A; 5ADX L; 4GHB A; 2X27 X; 3AAA B; 5KAI O; 3SYB A; 8PRN A; 2R88 A; 4E1T A; 3LK2 A; 2LHF A; #chains in the Genus database with same CATH homology 5KAF O; 4PJ0 O; 4IL6 O; 3WU2 O; 3KZI O; 5G38 A; 5GTI O; 3A0H O; 3JCU O; 5TIS O; 2AXT O; 5E79 O; 4UB6 O; 5B5E O; 5G39 A; 5GTH O; 5G3A A; 3A0B O; 1S5L O; 4UB8 O; 5KAI O; 5H2F O; 5B66 O;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
