6PRNA

E1m, k50a, r52a mutant of rh. blastica porin
Total Genus 76

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
289
structure length
289
Chain Sequence
MISLNGYGRFGLQYVEDRGVGLEDTIISSRLRINIVGTTETDQGVTFGAALAMQWDDGDAFAGTAGNAAQFWTSYNGVTVSVGNVDTAFDSVALTYDSEMGYEASSFGDAQSSFFAYNSKYDASGALDNYNGIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFANETVADVGVRFDF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (25-40)S1 (2-15)TIV1 (15-18)TI4 (101-104)TVIII1 (23-26)S16 (279-288)TII1 (19-22)S3 (45-56)TI1 (41-44)TII2 (56-59)TII3 (59-62)S4 (70-75)TIV2 (82-85)S6 (131-138)TI'1 (75-78)3H1 (88-90)TIV3 (92-95)S7 (142-150)TI2 (94-97)S8 (163-171)TI3 (96-99)TI5 (106-109)S15 (265-273)S13 (235-244)TII4 (188-191)TI7 (125-128)TI8 (127-130)TIV5 (150-153)TIV4 (139-142)3H3 (185-187)TI10 (172-175)S9 (175-183)S10 (193-201)TIV6 (182-185)TII'1 (215-218)TIV7 (201-204)S12 (222-232)TI11 (203-206)S11 (206-214)TI12 (218-221)TII5 (246-249)S14 (252-262)TII'2 (232-235)TII6 (262-265)TI13 (274-277)TI6 (122-125)TI9 (152-155)S5 (78-83)3H2 (157-159)Updating...
connected with : NaN
molecule tags Membrane protein
source organism Rhodobacter blasticus
publication title Porin mutants with new channel properties.
pubmed rcsb
molecule keywords PORIN
total genus 76
structure length 289
sequence length 289
ec nomenclature
pdb deposition date 1998-06-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 6prnA00
4AUIA 4FT6A 1OSMA 6PRNA 3HWBA 3VZWX 3FYXA 4FSOA 4FMSA 4LSIA 3WI4A 5FVNA 3T24A 4JFBA 3SY9A 4D5UA 3NSGA 2FGRA 3K19A 4LSEA 2K4TA 1PRNA 4LSHA 2ODJA 4FRXA 3T20A 3VY8X 2XE3A 2OMFA 3UU2A 4BUMX 1BT9A 4RJXA 2J1NA 5DL7A 3POUA 3HW9A 3SYSA 8PRNA 4D65A 2Y0LA 5DL6A 3SZVA 5DL5A 5PRNA 2PORA 4C69X 2Y2XA 2XE2A 3SZDA 3SYBA 3VY9X 4GCPA 3SY7A 3UPGA 2ZFGA 4D64A 2J4UP 3T0SA 1MPFA 3WI5A 1PHOA 3PRNA 4LSFA 5DL8A 4GCSA 1E54A 3JTYA 3EMNX 3VZTX 2FGQX 5JDPA 1BH3A 2ZLDA 4KR8A 1H6S1 4GCQA 4FOZA 1GFQA 2XE5A 1HXUA 4KRAA 3POXA 2O4VA 4RJWA 3O0EA 2PRNA 1GFPA 1HXXA 1GFOA 2XG6A 4KR4A 3PORA 1OPFA 3VZUX 4FRTA 2XE1A 1HXTA 1GFMA 1GFNA 7PRNA 4FSPA 2Y0HA 2QTKA 2Y0KA 3POQA 3A2SX
chains in the Genus database with same CATH superfamily
2ERVA 3A0BO 4AUIA 2R4OA 4FT6A 1OSMA 6PRNA 5IYUA 3AA0A 3HWBA 4FZMA 4UB8O 1YS5A 3LK2B 4AYNA 4AFKA 4FESA 2XTQA 3FYXA 1Q9GA 4FSOA 3VZWX 4FMSA 4LSIA 3WI4A 3RBHA 4E1SA 4O3YA 2JQYA 4AYID 1T1LA 4FQEA 2MHLA 4JFBA 5FVNA 1ZHWA 4G76A 3KZIO 1IZNB 2R4PA 4K3CA 4Z3TA 3SY9A 2KC0A 4C00A 4O3WA 4D5UA 3NSGA 3PGUA 5ADXK 2FGRA 3K19A 4LSEA 3DA3A 2KDYA 4RL9A 2XTRA 2K4TA 3AA1A 1PRNA 4LSHA 2ODJA 4FRXA 2GE4A 4B61A 2N2LA 3T20A 3HOLA 5G26A 4U9CA 4AKRA 3VY8X 4O3XB 3LK3B 2IWVA 2XE3A 3LK41 1P4TA 2OMFA 3AAEA 3UU2A 4AYDC 4GF4A 4BUMX 2WJQA 5AFUL 3AA0B 1BT9A 3LK3A 2LFUA 3VE2A 4RJXA 1BXWA 3T24A 4XNLA 4PUXA 4GHBA 2F1VA 2J1NA 4RLCA 5DL7A 1ZHZA 2R8AA 4O3ZA 3POUA 3HW9A 4FZNA 3PQUA 3WU2O 3BRZA 3SYSA 2YPVA 8PRNA 1T16A 2M06A 4D65A 1ORMA 2Y0LA 5T5FA 5JDPA 3QRAA 5DL6A 5E79O 3SZVA 5DL5A 5GTHO 5PRNA 1QJ9A 3AA1B 2PORA 3C5OA 5KAFO 3TZGA 4C69X 2AXTO 1QJ8A 2Y2XA 4G75A 3DA4A 3AA6A 2XE2A 3QRCA 3GP6A 3SYBA 3SZDA 2MNHA 4GCPA 4JCHA 3VY9X 5G39A 3PGSA 3SY7A 4C4VA 5GV0A 5H2FO 3UPGA 3AA7A 2ZFGA 3AAEB 5AFUK 3DZMA 3JCUO 4O4XA 2M07A 4D64A 2J4UP 3T0SA 3LK2A 4RLBA 1MPFA 3A0HO 2N2MA 2YNKA 2LHFA 3WI5A 2KXPA 4FZLA 1PHOA 4N58A 3PRNA 5B5EO 4LSFA 1ZHTA 5EE2A 2R89A 2WJRA 4AKRB 5DL8A 4AZLA 1IZNA 4F4BA 4QQ1A 3LK42 1S5LO 2W81C 1E54A 2X9KA 1THQA 2WVPA 3NJTA 3PF1A 4GCSA 2R4LA 1Q9FA 5G38A 2XMXA 3JTYA 1MM5A 2KZ7A 3EMNX 3VZTX 3AAAA 2FGQX 5KAIO 3V8UA 1BH3A 2ZLDA 4KR8A 3DWOX 3BS0A 3AA6B 4N74A 4O49A 2F1TA 2W80C 5GTIO 1H6S1 4C4VB 2R88A 2X27X 3UAQA 4AYEC 4GCQA 4FOZA 4PR7A 3AA7B 2F1CX 1GFQA 2XE5A 1HXUA 4AYMC 3PQSA 4KRAA 1ZHXA 3POXA 3KVDD 2O4VA 4RJWA 3BRYA 3O0EA 2PRNA 5TISO 1GFPA 1HXXA 2KXPB 1GFOA 1ZHYA 2XG6A 4FUVA 2R4NA 4KR4A 4PJ0O 4AKMA 4K3BA 2K0LA 3PORA 1OPFA 4UB6O 4XNKA 3VZUX 2Y7SA 4N59A 1QJPA 4IL6O 3HOEA 4FRTA 2XE1A 2JMMA 1HXTA 1GFMA 1G90A 1GFNA 7PRNA 3G7GA 3DWNA 3VE1A 1MM4A 2KZ7B 4FSPA 5ADXL 2Y0HA 2QTKA 3AAAB 4E1TA 2Y0KA 3PGRA 4CTDA 2IWWA 5G3AA 5B66O 4O4UA 5D5DA 3POQA 3A2SX 4N75A
chains in the Genus database with same CATH topology
2ERVA 4AUIA 4FT6A 1OSMA 6PRNA 5IYUA 3AA0A 3HWBA 4FZMA 1YS5A 3LK2B 4AYNA 4AFKA 4FESA 2XTQA 3FYXA 1Q9GA 4FSOA 3VZWX 4FMSA 4LSIA 3WI4A 3RBHA 4E1SA 4O3YA 4AYID 5FVNA 2MHLA 4JFBA 3T24A 1ZHWA 4G76A 4Z3TA 1IZNB 3SY9A 2KC0A 4O3WA 4D5UA 3NSGA 5ADXK 2FGRA 3K19A 4LSEA 3DA3A 2KDYA 4RL9A 2XTRA 2K4TA 3AA1A 1PRNA 4LSHA 2ODJA 4FRXA 2GE4A 4B61A 2N2LA 3T20A 3HOLA 5G26A 4U9CA 4AKRA 3VY8X 4O3XB 3LK3B 2XE3A 3LK41 1P4TA 2OMFA 3AAEA 3UU2A 4AYDC 4GF4A 4BUMX 5AFUL 3AA0B 1BT9A 3LK3A 2LFUA 3VE2A 4RJXA 1BXWA 4XNLA 4PUXA 4GHBA 2F1VA 2J1NA 4RLCA 5DL7A 1ZHZA 4O3ZA 3POUA 3HW9A 4FZNA 3PQUA 3SYSA 2YPVA 8PRNA 2M06A 4D65A 1ORMA 2Y0LA 5T5FA 3QRAA 5DL6A 3SZVA 5DL5A 5PRNA 1QJ9A 3AA1B 2PORA 3C5OA 3TZGA 4C69X 2Y2XA 1QJ8A 4G75A 3DA4A 3AA6A 2XE2A 3QRCA 3GP6A 3SYBA 3SZDA 2MNHA 4GCPA 4JCHA 3VY9X 4AKRB 3SY7A 5GV0A 3UPGA 3AA7A 2ZFGA 3AAEB 5AFUK 4O4XA 4D64A 2M07A 2J4UP 3T0SA 3LK2A 4RLBA 1MPFA 2N2MA 2YNKA 2LHFA 3WI5A 2KXPA 4FZLA 1PHOA 4N58A 3PRNA 4LSFA 1ZHTA 5EE2A 4F4BA 5DL8A 4AZLA 1IZNA 4QQ1A 3LK42 4GCSA 2W81C 1E54A 1THQA 1Q9FA 2XMXA 3JTYA 1MM5A 2KZ7A 3EMNX 3VZTX 3AAAA 2FGQX 3V8UA 5JDPA 1BH3A 2ZLDA 4KR8A 4O49A 3AA6B 2F1TA 2W80C 1H6S1 3UAQA 2X27X 4AYEC 4GCQA 4FOZA 3AA7B 1GFQA 2XE5A 1HXUA 4AYMC 3PQSA 4KRAA 1ZHXA 3POXA 3KVDD 2O4VA 4RJWA 3O0EA 2PRNA 1GFPA 1HXXA 2KXPB 1GFOA 1ZHYA 2XG6A 4FUVA 4KR4A 4AKMA 2K0LA 3PORA 1OPFA 4XNKA 3VZUX 2Y7SA 4N59A 1QJPA 3HOEA 4FRTA 2XE1A 2JMMA 1HXTA 1GFMA 1G90A 1GFNA 7PRNA 3G7GA 3VE1A 1MM4A 2KZ7B 4FSPA 5ADXL 2Y0HA 2QTKA 3AAAB 4E1TA 2Y0KA 4O4UA 5D5DA 3POQA 3A2SX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AUI A;  4FT6 A;  1OSM A;  6PRN A;  3HWB A;  3VZW X;  3FYX A;  4FSO A;  4FMS A;  4LSI A;  3WI4 A;  5FVN A;  3T24 A;  4JFB A;  3SY9 A;  4D5U A;  3NSG A;  2FGR A;  3K19 A;  4LSE A;  2K4T A;  1PRN A;  4LSH A;  2ODJ A;  4FRX A;  3T20 A;  3VY8 X;  2XE3 A;  2OMF A;  3UU2 A;  4BUM X;  1BT9 A;  4RJX A;  2J1N A;  5DL7 A;  3POU A;  3HW9 A;  3SYS A;  8PRN A;  4D65 A;  2Y0L A;  5DL6 A;  3SZV A;  5DL5 A;  5PRN A;  2POR A;  4C69 X;  2Y2X A;  2XE2 A;  3SZD A;  3SYB A;  3VY9 X;  4GCP A;  3SY7 A;  3UPG A;  2ZFG A;  4D64 A;  2J4U P;  3T0S A;  1MPF A;  3WI5 A;  1PHO A;  3PRN A;  4LSF A;  5DL8 A;  4GCS A;  1E54 A;  3JTY A;  3EMN X;  3VZT X;  2FGQ X;  5JDP A;  1BH3 A;  2ZLD A;  4KR8 A;  1H6S 1;  4GCQ A;  4FOZ A;  1GFQ A;  2XE5 A;  1HXU A;  4KRA A;  3POX A;  2O4V A;  4RJW A;  3O0E A;  2PRN A;  1GFP A;  1HXX A;  1GFO A;  2XG6 A;  4KR4 A;  3POR A;  1OPF A;  3VZU X;  4FRT A;  2XE1 A;  1HXT A;  1GFM A;  1GFN A;  7PRN A;  4FSP A;  2Y0H A;  2QTK A;  2Y0K A;  3POQ A;  3A2S X; 
#chains in the Genus database with same CATH topology
 2ERV A;  3A0B O;  4AUI A;  2R4O A;  4FT6 A;  1OSM A;  6PRN A;  5IYU A;  3AA0 A;  3HWB A;  4FZM A;  4UB8 O;  1YS5 A;  3LK2 B;  4AYN A;  4AFK A;  4FES A;  2XTQ A;  3FYX A;  1Q9G A;  4FSO A;  3VZW X;  4FMS A;  4LSI A;  3WI4 A;  3RBH A;  4E1S A;  4O3Y A;  2JQY A;  4AYI D;  1T1L A;  4FQE A;  2MHL A;  4JFB A;  5FVN A;  1ZHW A;  4G76 A;  3KZI O;  1IZN B;  2R4P A;  4K3C A;  4Z3T A;  3SY9 A;  2KC0 A;  4C00 A;  4O3W A;  4D5U A;  3NSG A;  3PGU A;  5ADX K;  2FGR A;  3K19 A;  4LSE A;  3DA3 A;  2KDY A;  4RL9 A;  2XTR A;  2K4T A;  3AA1 A;  1PRN A;  4LSH A;  2ODJ A;  4FRX A;  2GE4 A;  4B61 A;  2N2L A;  3T20 A;  3HOL A;  5G26 A;  4U9C A;  4AKR A;  3VY8 X;  4O3X B;  3LK3 B;  2IWV A;  2XE3 A;  3LK4 1;  1P4T A;  2OMF A;  3AAE A;  3UU2 A;  4AYD C;  4GF4 A;  4BUM X;  2WJQ A;  5AFU L;  3AA0 B;  1BT9 A;  3LK3 A;  2LFU A;  3VE2 A;  4RJX A;  1BXW A;  3T24 A;  4XNL A;  4PUX A;  4GHB A;  2F1V A;  2J1N A;  4RLC A;  5DL7 A;  1ZHZ A;  2R8A A;  4O3Z A;  3POU A;  3HW9 A;  4FZN A;  3PQU A;  3WU2 O;  3BRZ A;  3SYS A;  2YPV A;  8PRN A;  1T16 A;  2M06 A;  4D65 A;  1ORM A;  2Y0L A;  5T5F A;  5JDP A;  3QRA A;  5DL6 A;  5E79 O;  3SZV A;  5DL5 A;  5GTH O;  5PRN A;  1QJ9 A;  3AA1 B;  2POR A;  3C5O A;  5KAF O;  3TZG A;  4C69 X;  2AXT O;  1QJ8 A;  2Y2X A;  4G75 A;  3DA4 A;  3AA6 A;  2XE2 A;  3QRC A;  3GP6 A;  3SYB A;  3SZD A;  2MNH A;  4GCP A;  4JCH A;  3VY9 X;  5G39 A;  3PGS A;  3SY7 A;  4C4V A;  5GV0 A;  5H2F O;  3UPG A;  3AA7 A;  2ZFG A;  3AAE B;  5AFU K;  3DZM A;  3JCU O;  4O4X A;  2M07 A;  4D64 A;  2J4U P;  3T0S A;  3LK2 A;  4RLB A;  1MPF A;  3A0H O;  2N2M A;  2YNK A;  2LHF A;  3WI5 A;  2KXP A;  4FZL A;  1PHO A;  4N58 A;  3PRN A;  5B5E O;  4LSF A;  1ZHT A;  5EE2 A;  2R89 A;  2WJR A;  4AKR B;  5DL8 A;  4AZL A;  1IZN A;  4F4B A;  4QQ1 A;  3LK4 2;  1S5L O;  2W81 C;  1E54 A;  2X9K A;  1THQ A;  2WVP A;  3NJT A;  3PF1 A;  4GCS A;  2R4L A;  1Q9F A;  5G38 A;  2XMX A;  3JTY A;  1MM5 A;  2KZ7 A;  3EMN X;  3VZT X;  3AAA A;  2FGQ X;  5KAI O;  3V8U A;  1BH3 A;  2ZLD A;  4KR8 A;  3DWO X;  3BS0 A;  3AA6 B;  4N74 A;  4O49 A;  2F1T A;  2W80 C;  5GTI O;  1H6S 1;  4C4V B;  2R88 A;  2X27 X;  3UAQ A;  4AYE C;  4GCQ A;  4FOZ A;  4PR7 A;  3AA7 B;  2F1C X;  1GFQ A;  2XE5 A;  1HXU A;  4AYM C;  3PQS A;  4KRA A;  1ZHX A;  3POX A;  3KVD D;  2O4V A;  4RJW A;  3BRY A;  3O0E A;  2PRN A;  5TIS O;  1GFP A;  1HXX A;  2KXP B;  1GFO A;  1ZHY A;  2XG6 A;  4FUV A;  2R4N A;  4KR4 A;  4PJ0 O;  4AKM A;  4K3B A;  2K0L A;  3POR A;  1OPF A;  4UB6 O;  4XNK A;  3VZU X;  2Y7S A;  4N59 A;  1QJP A;  4IL6 O;  3HOE A;  4FRT A;  2XE1 A;  2JMM A;  1HXT A;  1GFM A;  1G90 A;  1GFN A;  7PRN A;  3G7G A;  3DWN A;  3VE1 A;  1MM4 A;  2KZ7 B;  4FSP A;  5ADX L;  2Y0H A;  2QTK A;  3AAA B;  4E1T A;  2Y0K A;  3PGR A;  4CTD A;  2IWW A;  5G3A A;  5B66 O;  4O4U A;  5D5D A;  3POQ A;  3A2S X;  4N75 A; 
#chains in the Genus database with same CATH homology
 2ERV A;  4AUI A;  4FT6 A;  1OSM A;  6PRN A;  5IYU A;  3AA0 A;  3HWB A;  4FZM A;  1YS5 A;  3LK2 B;  4AYN A;  4AFK A;  4FES A;  2XTQ A;  3FYX A;  1Q9G A;  4FSO A;  3VZW X;  4FMS A;  4LSI A;  3WI4 A;  3RBH A;  4E1S A;  4O3Y A;  4AYI D;  5FVN A;  2MHL A;  4JFB A;  3T24 A;  1ZHW A;  4G76 A;  4Z3T A;  1IZN B;  3SY9 A;  2KC0 A;  4O3W A;  4D5U A;  3NSG A;  5ADX K;  2FGR A;  3K19 A;  4LSE A;  3DA3 A;  2KDY A;  4RL9 A;  2XTR A;  2K4T A;  3AA1 A;  1PRN A;  4LSH A;  2ODJ A;  4FRX A;  2GE4 A;  4B61 A;  2N2L A;  3T20 A;  3HOL A;  5G26 A;  4U9C A;  4AKR A;  3VY8 X;  4O3X B;  3LK3 B;  2XE3 A;  3LK4 1;  1P4T A;  2OMF A;  3AAE A;  3UU2 A;  4AYD C;  4GF4 A;  4BUM X;  5AFU L;  3AA0 B;  1BT9 A;  3LK3 A;  2LFU A;  3VE2 A;  4RJX A;  1BXW A;  4XNL A;  4PUX A;  4GHB A;  2F1V A;  2J1N A;  4RLC A;  5DL7 A;  1ZHZ A;  4O3Z A;  3POU A;  3HW9 A;  4FZN A;  3PQU A;  3SYS A;  2YPV A;  8PRN A;  2M06 A;  4D65 A;  1ORM A;  2Y0L A;  5T5F A;  3QRA A;  5DL6 A;  3SZV A;  5DL5 A;  5PRN A;  1QJ9 A;  3AA1 B;  2POR A;  3C5O A;  3TZG A;  4C69 X;  2Y2X A;  1QJ8 A;  4G75 A;  3DA4 A;  3AA6 A;  2XE2 A;  3QRC A;  3GP6 A;  3SYB A;  3SZD A;  2MNH A;  4GCP A;  4JCH A;  3VY9 X;  4AKR B;  3SY7 A;  5GV0 A;  3UPG A;  3AA7 A;  2ZFG A;  3AAE B;  5AFU K;  4O4X A;  4D64 A;  2M07 A;  2J4U P;  3T0S A;  3LK2 A;  4RLB A;  1MPF A;  2N2M A;  2YNK A;  2LHF A;  3WI5 A;  2KXP A;  4FZL A;  1PHO A;  4N58 A;  3PRN A;  4LSF A;  1ZHT A;  5EE2 A;  4F4B A;  5DL8 A;  4AZL A;  1IZN A;  4QQ1 A;  3LK4 2;  4GCS A;  2W81 C;  1E54 A;  1THQ A;  1Q9F A;  2XMX A;  3JTY A;  1MM5 A;  2KZ7 A;  3EMN X;  3VZT X;  3AAA A;  2FGQ X;  3V8U A;  5JDP A;  1BH3 A;  2ZLD A;  4KR8 A;  4O49 A;  3AA6 B;  2F1T A;  2W80 C;  1H6S 1;  3UAQ A;  2X27 X;  4AYE C;  4GCQ A;  4FOZ A;  3AA7 B;  1GFQ A;  2XE5 A;  1HXU A;  4AYM C;  3PQS A;  4KRA A;  1ZHX A;  3POX A;  3KVD D;  2O4V A;  4RJW A;  3O0E A;  2PRN A;  1GFP A;  1HXX A;  2KXP B;  1GFO A;  1ZHY A;  2XG6 A;  4FUV A;  4KR4 A;  4AKM A;  2K0L A;  3POR A;  1OPF A;  4XNK A;  3VZU X;  2Y7S A;  4N59 A;  1QJP A;  3HOE A;  4FRT A;  2XE1 A;  2JMM A;  1HXT A;  1GFM A;  1G90 A;  1GFN A;  7PRN A;  3G7G A;  3VE1 A;  1MM4 A;  2KZ7 B;  4FSP A;  5ADX L;  2Y0H A;  2QTK A;  3AAA B;  4E1T A;  2Y0K A;  4O4U A;  5D5D A;  3POQ A;  3A2S X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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