8PRNA

E1m, k50a, r52a, d97a, e99a mutant of rh. blastica porin
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
289
structure length
289
Chain Sequence
MISLNGYGRFGLQYVEDRGVGLEDTIISSRLRINIVGTTETDQGVTFGAALAMQWDDGDAFAGTAGNAAQFWTSYNGVTVSVGNVDTAFDSVALTYASAMGYEASSFGDAQSSFFAYNSKYDASGALDNYNGIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFANETVADVGVRFDF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Porin mutants with new channel properties.
pubmed rcsb
molecule tags Membrane protein
source organism Rhodobacter blasticus
molecule keywords PORIN
total genus 74
structure length 289
sequence length 289
ec nomenclature
pdb deposition date 1998-06-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 8prnA00
4KR8A 1PHOA 3SY7A 4FSPA 3POXA 3VZUX 3POUA 3SYSA 4FOZA 1MPFA 2J4UP 2J1NA 3SZVA 3SY9A 4D65A 1GFOA 3T24A 4GCPA 2QTKA 2PORA 4GCSA 3PRNA 3VZWX 4FT6A 4BUMX 4LSIA 1PRNA 2FGRA 3O0EA 1GFPA 1E54A 4KRAA 4LSFA 2O4VA 1H6S1 1OSMA 3HW9A 5FVNA 4RJXA 4LSEA 3JTYA 3SYBA 2ODJA 3T0SA 2XE5A 4FSOA 3A2SX 3VY9X 5DL7A 5PRNA 2K4TA 1OPFA 4KR4A 4D64A 4FRXA 1GFNA 3FYXA 1HXUA 1GFQA 6PRNA 2XE3A 2OMFA 8PRNA 2XE1A 7PRNA 1GFMA 1BH3A 3VZTX 1HXXA 2FGQX 3VY8X 3UPGA 2XG6A 2Y0HA 2Y0KA 5DL8A 3K19A 3HWBA 5JDPA 4D5UA 4JFBA 4GCQA 2XE2A 4LSHA 3UU2A 4C69X 3EMNX 3SZDA 1HXTA 4FRTA 3WI5A 4FMSA 2ZLDA 2ZFGA 3NSGA 2Y2XA 2Y0LA 4RJWA 3PORA 2PRNA 4AUIA 3POQA 5DL6A 1BT9A 3T20A 5DL5A 3WI4A
chains in the Genus database with same CATH superfamily
4KR8A 3A0BO 2KZ7A 3DA3A 1PHOA 4FZMA 5AFUL 2XTRA 3PQUA 4FUVA 5B66O 1YS5A 2IWWA 3WU2O 3A0HO 4RL9A 4O4UA 4K3BA 3V8UA 2M06A 3SY7A 4FSPA 3AAEB 3KZIO 3POXA 4UB6O 3VZUX 3HOLA 2N2MA 3POUA 4FOZA 1MPFA 3SYSA 2IWVA 3BRYA 4AKRB 1ZHXA 2F1VA 2J1NA 2R4OA 3SZVA 3SY9A 4AZLA 4C69X 4D65A 2J4UP 1ZHWA 1GFOA 1IZNB 4G76A 4O49A 4AYMC 3JCUO 1MM5A 3AA1B 3PGRA 3T24A 5H2FO 1QJPA 4GCPA 4O4XA 2QTKA 2PORA 4GCSA 4N75A 4O3XB 5B5EO 5KAIO 3PRNA 4C4VB 3VZWX 3AAAB 4FQEA 4FZNA 4FT6A 3HOEA 2WVPA 1Q9FA 4BUMX 1QJ9A 3AA7B 4XNKA 4LSIA 1PRNA 2FGRA 3O0EA 4U9CA 4AYNA 4FZLA 1GFPA 2KC0A 1E54A 4KRAA 4LSFA 2O4VA 2K0LA 5G39A 2F1TA 1BXWA 3KVDD 3DWOX 3PF1A 4N74A 5ADXL 1H6S1 2R4LA 1OSMA 2X9KA 4AFKA 4F4BA 3HW9A 5FVNA 4RJXA 1Q9GA 4LSEA 3LK41 2R4PA 3JTYA 3AA0A 3PGUA 4PJ0O 3SYBA 2ODJA 2XTQA 3T0SA 4UB8O 1S5LO 2XE5A 4FSOA 3A2SX 3QRAA 2WJRA 3DA4A 4K3CA 5TISO 3VE2A 5GV0A 2KXPA 3VY9X 5DL7A 5PRNA 2R88A 3PQSA 1T1LA 3BRZA 4E1SA 2K4TA 1OPFA 3TZGA 5GTHO 2R89A 3LK2A 4KR4A 5EE2A 4O3YA 4D64A 4N59A 1T16A 4FRXA 5T5FA 1GFNA 3RBHA 4IL6O 4QQ1A 2KDYA 2KZ7B 1HXUA 2R4NA 3FYXA 1GFQA 6PRNA 4XNLA 2XE3A 2OMFA 8PRNA 2MNHA 3AA6A 3DWNA 5IYUA 3LK3A 2XE1A 5G3AA 3LK42 1P4TA 1IZNA 1GFMA 4G75A 1BH3A 3VZTX 7PRNA 1HXXA 2FGQX 3VY8X 2GE4A 4AKMA 3UPGA 4PR7A 5KAFO 2XG6A 5AFUK 2Y0HA 2YNKA 3NJTA 2Y0KA 2MHLA 2R8AA 4GHBA 3GP6A 3K19A 5DL8A 1ZHTA 5G38A 3HWBA 5JDPA 3DZMA 5E79O 4JFBA 4D5UA 4AYEC 2LFUA 4CTDA 1ZHYA 4GCQA 2XE2A 3C5OA 3UAQA 2Y7SA 2YPVA 3VE1A 4O3WA 2WJQA 2KXPB 4GF4A 4LSHA 3UU2A 3QRCA 5D5DA 4AYDC 1THQA 3AAEA 3EMNX 4B61A 4C00A 3LK2B 3SZDA 1HXTA 3PGSA 4FRTA 4FMSA 4RLCA 3WI5A 2W81C 4AKRA 2ZLDA 5G26A 4E1TA 2LHFA 2M07A 4Z3TA 2JMMA 4JCHA 2ZFGA 3NSGA 2W80C 2Y2XA 2XMXA 2Y0LA 3AA1A 3AA6B 3LK3B 4PUXA 3BS0A 5GTIO 4RJWA 3PORA 2PRNA 1QJ8A 3G7GA 4AUIA 3POQA 4O3ZA 1MM4A 1ZHZA 4RLBA 3WI4A 4N58A 3AAAA 4C4VA 5DL6A 1BT9A 3T20A 3AA0B 2N2LA 5DL5A 1ORMA 3AA7A 1G90A 2F1CX 2JQYA 2AXTO 2ERVA 5ADXK 2X27X 4FESA 4AYID
chains in the Genus database with same CATH topology
4KR8A 4FZMA 2KZ7A 3DA3A 1PHOA 5AFUL 2XTRA 3PQUA 4FUVA 1YS5A 4RL9A 4O4UA 3V8UA 2M06A 3SY7A 4FSPA 3AAEB 3POXA 3VZUX 3HOLA 2N2MA 3POUA 4FOZA 1MPFA 3SYSA 4AZLA 4AKRB 1ZHXA 2F1VA 2J1NA 2J4UP 3SZVA 3SY9A 4D65A 1ZHWA 1GFOA 1IZNB 4G76A 4O49A 4AYMC 1MM5A 3AA1B 3T24A 1QJPA 4GCPA 4O4XA 2QTKA 2PORA 4GCSA 4O3XB 3PRNA 3VZWX 3AAAB 4FZNA 4FT6A 3HOEA 1Q9FA 4BUMX 1QJ9A 3AA7B 4XNKA 4LSIA 1PRNA 2FGRA 3O0EA 4U9CA 4AYNA 4FZLA 1GFPA 2KC0A 1E54A 4KRAA 4LSFA 2O4VA 2K0LA 2F1TA 1BXWA 3KVDD 5ADXL 1H6S1 1OSMA 4AFKA 4F4BA 3HW9A 5FVNA 4RJXA 1Q9GA 4LSEA 3LK41 3JTYA 3AA0A 3SYBA 2ODJA 2XTQA 3T0SA 2XE5A 4FSOA 3A2SX 3QRAA 3VE2A 3DA4A 5GV0A 2KXPA 3VY9X 5DL7A 5PRNA 3PQSA 4E1SA 2K4TA 1OPFA 3TZGA 3LK2A 4KR4A 5EE2A 4O3YA 4D64A 4N59A 4FRXA 5T5FA 1GFNA 3RBHA 4QQ1A 2KDYA 2KZ7B 1HXUA 3FYXA 1GFQA 6PRNA 4XNLA 2XE3A 2OMFA 8PRNA 2MNHA 3AA6A 5IYUA 3LK3A 2XE1A 3LK42 1P4TA 1IZNA 1GFMA 4G75A 1BH3A 3VZTX 7PRNA 1HXXA 2FGQX 3VY8X 2GE4A 4AKMA 3UPGA 2XG6A 5AFUK 2Y0HA 2YNKA 2Y0KA 2MHLA 4GHBA 5DL8A 3GP6A 3K19A 1ZHTA 3HWBA 5JDPA 4D5UA 4JFBA 4AYEC 2LFUA 1ZHYA 4GCQA 2XE2A 3C5OA 3UAQA 2Y7SA 2YPVA 3VE1A 4O3WA 2KXPB 4GF4A 4LSHA 3UU2A 3QRCA 5D5DA 4AYDC 1THQA 3AAEA 3EMNX 4B61A 4C69X 3LK2B 3SZDA 1HXTA 4FRTA 4RLCA 4FMSA 3WI5A 2W81C 4AKRA 2ZLDA 5G26A 4E1TA 2LHFA 2M07A 4Z3TA 2JMMA 4JCHA 2ZFGA 3NSGA 2W80C 2Y2XA 2XMXA 2Y0LA 3AA1A 3AA6B 3LK3B 4PUXA 4RJWA 3PORA 2PRNA 1QJ8A 3G7GA 4AUIA 3POQA 4O3ZA 1MM4A 1ZHZA 4RLBA 3WI4A 4N58A 3AAAA 5DL6A 1BT9A 3T20A 3AA0B 2N2LA 5DL5A 1ORMA 3AA7A 1G90A 2ERVA 5ADXK 2X27X 4FESA 4AYID
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KR8 A;  1PHO A;  3SY7 A;  4FSP A;  3POX A;  3VZU X;  3POU A;  3SYS A;  4FOZ A;  1MPF A;  2J4U P;  2J1N A;  3SZV A;  3SY9 A;  4D65 A;  1GFO A;  3T24 A;  4GCP A;  2QTK A;  2POR A;  4GCS A;  3PRN A;  3VZW X;  4FT6 A;  4BUM X;  4LSI A;  1PRN A;  2FGR A;  3O0E A;  1GFP A;  1E54 A;  4KRA A;  4LSF A;  2O4V A;  1H6S 1;  1OSM A;  3HW9 A;  5FVN A;  4RJX A;  4LSE A;  3JTY A;  3SYB A;  2ODJ A;  3T0S A;  2XE5 A;  4FSO A;  3A2S X;  3VY9 X;  5DL7 A;  5PRN A;  2K4T A;  1OPF A;  4KR4 A;  4D64 A;  4FRX A;  1GFN A;  3FYX A;  1HXU A;  1GFQ A;  6PRN A;  2XE3 A;  2OMF A;  8PRN A;  2XE1 A;  7PRN A;  1GFM A;  1BH3 A;  3VZT X;  1HXX A;  2FGQ X;  3VY8 X;  3UPG A;  2XG6 A;  2Y0H A;  2Y0K A;  5DL8 A;  3K19 A;  3HWB A;  5JDP A;  4D5U A;  4JFB A;  4GCQ A;  2XE2 A;  4LSH A;  3UU2 A;  4C69 X;  3EMN X;  3SZD A;  1HXT A;  4FRT A;  3WI5 A;  4FMS A;  2ZLD A;  2ZFG A;  3NSG A;  2Y2X A;  2Y0L A;  4RJW A;  3POR A;  2PRN A;  4AUI A;  3POQ A;  5DL6 A;  1BT9 A;  3T20 A;  5DL5 A;  3WI4 A; 
#chains in the Genus database with same CATH topology
 4KR8 A;  3A0B O;  2KZ7 A;  3DA3 A;  1PHO A;  4FZM A;  5AFU L;  2XTR A;  3PQU A;  4FUV A;  5B66 O;  1YS5 A;  2IWW A;  3WU2 O;  3A0H O;  4RL9 A;  4O4U A;  4K3B A;  3V8U A;  2M06 A;  3SY7 A;  4FSP A;  3AAE B;  3KZI O;  3POX A;  4UB6 O;  3VZU X;  3HOL A;  2N2M A;  3POU A;  4FOZ A;  1MPF A;  3SYS A;  2IWV A;  3BRY A;  4AKR B;  1ZHX A;  2F1V A;  2J1N A;  2R4O A;  3SZV A;  3SY9 A;  4AZL A;  4C69 X;  4D65 A;  2J4U P;  1ZHW A;  1GFO A;  1IZN B;  4G76 A;  4O49 A;  4AYM C;  3JCU O;  1MM5 A;  3AA1 B;  3PGR A;  3T24 A;  5H2F O;  1QJP A;  4GCP A;  4O4X A;  2QTK A;  2POR A;  4GCS A;  4N75 A;  4O3X B;  5B5E O;  5KAI O;  3PRN A;  4C4V B;  3VZW X;  3AAA B;  4FQE A;  4FZN A;  4FT6 A;  3HOE A;  2WVP A;  1Q9F A;  4BUM X;  1QJ9 A;  3AA7 B;  4XNK A;  4LSI A;  1PRN A;  2FGR A;  3O0E A;  4U9C A;  4AYN A;  4FZL A;  1GFP A;  2KC0 A;  1E54 A;  4KRA A;  4LSF A;  2O4V A;  2K0L A;  5G39 A;  2F1T A;  1BXW A;  3KVD D;  3DWO X;  3PF1 A;  4N74 A;  5ADX L;  1H6S 1;  2R4L A;  1OSM A;  2X9K A;  4AFK A;  4F4B A;  3HW9 A;  5FVN A;  4RJX A;  1Q9G A;  4LSE A;  3LK4 1;  2R4P A;  3JTY A;  3AA0 A;  3PGU A;  4PJ0 O;  3SYB A;  2ODJ A;  2XTQ A;  3T0S A;  4UB8 O;  1S5L O;  2XE5 A;  4FSO A;  3A2S X;  3QRA A;  2WJR A;  3DA4 A;  4K3C A;  5TIS O;  3VE2 A;  5GV0 A;  2KXP A;  3VY9 X;  5DL7 A;  5PRN A;  2R88 A;  3PQS A;  1T1L A;  3BRZ A;  4E1S A;  2K4T A;  1OPF A;  3TZG A;  5GTH O;  2R89 A;  3LK2 A;  4KR4 A;  5EE2 A;  4O3Y A;  4D64 A;  4N59 A;  1T16 A;  4FRX A;  5T5F A;  1GFN A;  3RBH A;  4IL6 O;  4QQ1 A;  2KDY A;  2KZ7 B;  1HXU A;  2R4N A;  3FYX A;  1GFQ A;  6PRN A;  4XNL A;  2XE3 A;  2OMF A;  8PRN A;  2MNH A;  3AA6 A;  3DWN A;  5IYU A;  3LK3 A;  2XE1 A;  5G3A A;  3LK4 2;  1P4T A;  1IZN A;  1GFM A;  4G75 A;  1BH3 A;  3VZT X;  7PRN A;  1HXX A;  2FGQ X;  3VY8 X;  2GE4 A;  4AKM A;  3UPG A;  4PR7 A;  5KAF O;  2XG6 A;  5AFU K;  2Y0H A;  2YNK A;  3NJT A;  2Y0K A;  2MHL A;  2R8A A;  4GHB A;  3GP6 A;  3K19 A;  5DL8 A;  1ZHT A;  5G38 A;  3HWB A;  5JDP A;  3DZM A;  5E79 O;  4JFB A;  4D5U A;  4AYE C;  2LFU A;  4CTD A;  1ZHY A;  4GCQ A;  2XE2 A;  3C5O A;  3UAQ A;  2Y7S A;  2YPV A;  3VE1 A;  4O3W A;  2WJQ A;  2KXP B;  4GF4 A;  4LSH A;  3UU2 A;  3QRC A;  5D5D A;  4AYD C;  1THQ A;  3AAE A;  3EMN X;  4B61 A;  4C00 A;  3LK2 B;  3SZD A;  1HXT A;  3PGS A;  4FRT A;  4FMS A;  4RLC A;  3WI5 A;  2W81 C;  4AKR A;  2ZLD A;  5G26 A;  4E1T A;  2LHF A;  2M07 A;  4Z3T A;  2JMM A;  4JCH A;  2ZFG A;  3NSG A;  2W80 C;  2Y2X A;  2XMX A;  2Y0L A;  3AA1 A;  3AA6 B;  3LK3 B;  4PUX A;  3BS0 A;  5GTI O;  4RJW A;  3POR A;  2PRN A;  1QJ8 A;  3G7G A;  4AUI A;  3POQ A;  4O3Z A;  1MM4 A;  1ZHZ A;  4RLB A;  3WI4 A;  4N58 A;  3AAA A;  4C4V A;  5DL6 A;  1BT9 A;  3T20 A;  3AA0 B;  2N2L A;  5DL5 A;  1ORM A;  3AA7 A;  1G90 A;  2F1C X;  2JQY A;  2AXT O;  2ERV A;  5ADX K;  2X27 X;  4FES A;  4AYI D; 
#chains in the Genus database with same CATH homology
 4KR8 A;  4FZM A;  2KZ7 A;  3DA3 A;  1PHO A;  5AFU L;  2XTR A;  3PQU A;  4FUV A;  1YS5 A;  4RL9 A;  4O4U A;  3V8U A;  2M06 A;  3SY7 A;  4FSP A;  3AAE B;  3POX A;  3VZU X;  3HOL A;  2N2M A;  3POU A;  4FOZ A;  1MPF A;  3SYS A;  4AZL A;  4AKR B;  1ZHX A;  2F1V A;  2J1N A;  2J4U P;  3SZV A;  3SY9 A;  4D65 A;  1ZHW A;  1GFO A;  1IZN B;  4G76 A;  4O49 A;  4AYM C;  1MM5 A;  3AA1 B;  3T24 A;  1QJP A;  4GCP A;  4O4X A;  2QTK A;  2POR A;  4GCS A;  4O3X B;  3PRN A;  3VZW X;  3AAA B;  4FZN A;  4FT6 A;  3HOE A;  1Q9F A;  4BUM X;  1QJ9 A;  3AA7 B;  4XNK A;  4LSI A;  1PRN A;  2FGR A;  3O0E A;  4U9C A;  4AYN A;  4FZL A;  1GFP A;  2KC0 A;  1E54 A;  4KRA A;  4LSF A;  2O4V A;  2K0L A;  2F1T A;  1BXW A;  3KVD D;  5ADX L;  1H6S 1;  1OSM A;  4AFK A;  4F4B A;  3HW9 A;  5FVN A;  4RJX A;  1Q9G A;  4LSE A;  3LK4 1;  3JTY A;  3AA0 A;  3SYB A;  2ODJ A;  2XTQ A;  3T0S A;  2XE5 A;  4FSO A;  3A2S X;  3QRA A;  3VE2 A;  3DA4 A;  5GV0 A;  2KXP A;  3VY9 X;  5DL7 A;  5PRN A;  3PQS A;  4E1S A;  2K4T A;  1OPF A;  3TZG A;  3LK2 A;  4KR4 A;  5EE2 A;  4O3Y A;  4D64 A;  4N59 A;  4FRX A;  5T5F A;  1GFN A;  3RBH A;  4QQ1 A;  2KDY A;  2KZ7 B;  1HXU A;  3FYX A;  1GFQ A;  6PRN A;  4XNL A;  2XE3 A;  2OMF A;  8PRN A;  2MNH A;  3AA6 A;  5IYU A;  3LK3 A;  2XE1 A;  3LK4 2;  1P4T A;  1IZN A;  1GFM A;  4G75 A;  1BH3 A;  3VZT X;  7PRN A;  1HXX A;  2FGQ X;  3VY8 X;  2GE4 A;  4AKM A;  3UPG A;  2XG6 A;  5AFU K;  2Y0H A;  2YNK A;  2Y0K A;  2MHL A;  4GHB A;  5DL8 A;  3GP6 A;  3K19 A;  1ZHT A;  3HWB A;  5JDP A;  4D5U A;  4JFB A;  4AYE C;  2LFU A;  1ZHY A;  4GCQ A;  2XE2 A;  3C5O A;  3UAQ A;  2Y7S A;  2YPV A;  3VE1 A;  4O3W A;  2KXP B;  4GF4 A;  4LSH A;  3UU2 A;  3QRC A;  5D5D A;  4AYD C;  1THQ A;  3AAE A;  3EMN X;  4B61 A;  4C69 X;  3LK2 B;  3SZD A;  1HXT A;  4FRT A;  4RLC A;  4FMS A;  3WI5 A;  2W81 C;  4AKR A;  2ZLD A;  5G26 A;  4E1T A;  2LHF A;  2M07 A;  4Z3T A;  2JMM A;  4JCH A;  2ZFG A;  3NSG A;  2W80 C;  2Y2X A;  2XMX A;  2Y0L A;  3AA1 A;  3AA6 B;  3LK3 B;  4PUX A;  4RJW A;  3POR A;  2PRN A;  1QJ8 A;  3G7G A;  4AUI A;  3POQ A;  4O3Z A;  1MM4 A;  1ZHZ A;  4RLB A;  3WI4 A;  4N58 A;  3AAA A;  5DL6 A;  1BT9 A;  3T20 A;  3AA0 B;  2N2L A;  5DL5 A;  1ORM A;  3AA7 A;  1G90 A;  2ERV A;  5ADX K;  2X27 X;  4FES A;  4AYI D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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