The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
30
|
sequence length |
144
|
structure length |
144
|
Chain Sequence |
SVLVDLQIATENIEGLPTEEQIVQWATGAVQPEGNEVEMTVRIVDEAESHELNLTYRGKDRPTNVLSFPFECPDEVELPLLGDLVICRQVVEREASEQEKPLMAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
NMR structure of HI0004, a putative essential gene product from Haemophilus influenzae, and comparison with the X-ray structure of an Aquifex aeolicus homolog
pubmed doi rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Haemophilus influenzae
|
| molecule keywords |
Hypothetical UPF0054 protein HI0004
|
| total genus |
30
|
| structure length |
144
|
| sequence length |
144
|
| ec nomenclature | |
| pdb deposition date | 2004-08-26 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02130 | UPF0054 | Uncharacterized protein family UPF0054 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Collagenase (Catalytic Domain) | Metalloproteases ("zincins"), catalytic domain |
#chains in the Genus database with same CATH superfamily 1XAX A; 1TVI A; 1XM5 A; 1OZ9 A; #chains in the Genus database with same CATH topology 3KME A; 2XS4 A; 1XAX A; 2FV5 A; 4XM8 A; 4L7A A; 1OS2 A; 1CK7 A; 1IAC A; 3EHY A; 3LIK A; 1JAQ A; 1Y8J A; 3DTE A; 1JAP A; 5D3C A; 3EDZ A; 2N8R A; 1JKY A; 2W15 A; 1DTH A; 1G4K A; 4FVL A; 1XFV A; 4H2E A; 1IAE A; 3I7I A; 5CUH A; 1JAN A; 4G9L A; 4H82 A; 5BPA A; 1SAT A; 1UTT A; 1XFW A; 3TS4 A; 1QIB A; 1MMB A; 4GWM A; 1CXV A; 3OHL A; 5LAB A; 5D1S A; 1CGL A; 3N2U A; 3AYK A; 1H71 P; 4H49 A; 1D7X A; 3LQB A; 1CGE A; 1EAK A; 1CIZ A; 3B92 A; 3DTI A; 2MZE A; 4HX3 A; 3LJT A; 3AYU A; 3HBV P; 4PKR A; 3DTK A; 3SHI A; 2OZR A; 3O64 A; 3P24 A; 1KUF A; 2MZH A; 2Y6C A; 5B5O A; 4AYK A; 2JT5 A; 4JIJ A; 5D2B A; 4CTH A; 3B2Z A; 4ZR5 A; 3WV2 A; 1GO8 P; 1B8Y A; 1ZXV A; 1DMT A; 1L6J A; 1KAP P; 3P1V A; 4Q1L A; 3HY7 A; 1GE7 A; 1O0T A; 3Q2G A; 1MMP A; 4EFS A; 1D8M A; 1QJJ A; 1XUR A; 1FLS A; 3HB2 P; 1HFS A; 2OY2 A; 3USN A; 2XS3 A; 3N2V A; 1I1I P; 1YOU A; 4QKZ A; 3GBO A; 3F16 A; 2RJP A; 5I43 A; 1SMP A; 3V96 B; 1YCM A; 1IAD A; 2DDF A; 4L19 A; 2OXZ A; 1YQY A; 5JMY A; 2X7M A; 4L6T A; 1HOV A; 1I76 A; 1EUB A; 1K7Q A; 1GE5 A; 1UMS A; 1MMQ A; 5D1T A; 1R1H A; 1BUV M; 4XBH A; 5CXA A; 1ROS A; 2SRT A; 1JJ9 A; 3HBU P; 5I3M A; 3DPE A; 4JA1 A; 2OW9 A; 1SU3 A; 4IUW A; 2I47 A; 2D1O A; 2CKI A; 2OW1 A; 4L63 A; 1PWV A; 2JT6 A; 1G49 A; 1XUD A; 2OY4 A; 3Q2H A; 3HY9 A; 2W0D A; 1D5J A; 3RTT A; 3LKA A; 3VI1 A; 3CKI A; 2DW1 A; 3LQ0 A; 2WO9 A; 1JIZ A; 1BKC I; 1PWQ A; 1MNC A; 4H84 A; 3ZUK A; 2TCL A; 1OM6 A; 1R1I A; 5BOT A; 3I7G A; 3ZVS A; 1OS9 A; 5BOY A; 3EDH A; 1OM7 A; 5H8X A; 1PWW A; 4XM6 A; 2HU6 A; 1Q3A A; 456C A; 4FXQ A; 1GXD A; 2X3C A; 1SRP A; 4H1Q A; 3RTS A; 4AXQ A; 2YB9 A; 1HTD A; 2O3E A; 2W14 A; 3EDG A; 3LUM A; 1XUC A; 3ZXH A; 3E8R A; 1G12 A; 4XCT A; 1SLM A; 1R1J A; 1GKD A; 1JIW P; 1BSW A; 3K7L A; 1KUI A; 2KRJ A; 2E3X A; 3F17 A; 4R3V A; 1IAA A; 4WZV A; 2DW0 A; 1BIW A; 3DSL A; 3TT4 A; 3NX7 A; 3AIG A; 3OHO A; 4I35 A; 5L79 A; 2E2D A; 3EHX A; 2YUF A; 2CLT A; 2J0T A; 3LIR A; 2W13 A; 1QUA A; 5D1U A; 5I2Z A; 1ZTQ A; 4DD8 A; 1XFY A; 1PWU A; 1UEA A; 2USN A; 1YP1 A; 2Z2D A; 1A86 A; 3KEK A; 4GR8 A; 3LK8 A; 1JAO A; 3DWB A; 1PWP A; 2ERO A; 1UMT A; 4ILW D; 4H30 A; 3WV1 A; 1XFU A; 4IJO A; 5I4O A; 2OW2 A; 3BA0 A; 2WO8 A; 4G0D A; 3KHI A; 3DPF A; 4WK7 A; 1KUG A; 4GWN A; 1FM1 A; 1AKL A; 2A8H A; 1RM8 A; 3KRY A; 1BUD A; 4GUY A; 1XM5 A; 4PKT A; 4H76 A; 4ON1 A; 2DW2 A; 4PKV A; 1ZVX A; 1C7K A; 2K9C A; 1WNI A; 4DPE A; 2FV9 A; 1Y0V A; 1SLN A; 1XFZ A; 2ERP A; 2POJ A; 3O2X A; 1D8F A; 3ELM A; 1BM6 A; 2PJT A; 2W12 A; 4A7B A; 4JP4 A; 2OVX A; 1BKC E; 4WKE A; 1CQR A; 1G9K A; 1USN A; 3HYG A; 4PKU A; 2OW0 A; 830C A; 3HDA P; 3LEA A; 2YIG A; 1ZXC A; 1EB6 A; 2QPJ A; 4FU4 A; 1B3D A; 4J4M A; 2J83 A; 1K7I A; 1OZ9 A; 1HV5 A; 3UVC A; 3MA2 A; 1O0Q A; 1ZS0 A; 3TVC A; 3LJZ A; 4XM7 A; 1S4B P; 2Y6D A; 1GKC A; 4DF9 A; 1KUH A; 3U1R A; 4IN9 A; 1KBC A; 1R55 A; 4GF1 A; 4WF6 A; 1OM8 A; 2X3A A; 1OO9 A; 1OMJ A; 2OVZ A; 3G5C A; 1MMR A; 2D1N A; 3KEJ A; 4HMA A; 4WKI A; 1UTZ A; 4GR0 A; 4PKQ A; 1AST A; 1C3I A; 1HFC A; 1R54 A; 1A85 A; 5D7W A; 1QJI A; 2JSD A; 3KWV C; 1BZS A; 2DDY A; 3F19 A; 1G05 A; 2AYK A; 2RJQ A; 2MLS A; 1KUK A; 2K2G A; 3LUN A; 1BKC A; 1CGF A; 4GQL A; 5B5P A; 3LMC A; 3WV3 A; 1BQO A; 1QIA A; 1AF0 A; 1C8T A; 1K7G A; 1Y93 A; 3F1A A; 3LIL A; 4JPA A; 1GO7 P; 2OXU A; 3KEC A; 3F18 A; 1ND1 A; 1ATL A; 4DV8 A; 2V4B A; 1ZP5 A; 1QIC A; 2JIH A; 2OI0 A; 3DL1 A; 3L0V A; 2JNP A; 2OXW A; 1Z3J A; 4PKW A; 3L0T A; 3LE9 A; 2X3B A; 4AIG A; 5I12 A; 1HY7 A; 1J7N A; 4GR3 A; 4FXY P; 2O36 A; 5I0L A; 3TSK A; 3K7N A; 4I03 A; 3G42 A; 1IAG A; 2L0R A; 5L7F A; 966C A; 2WOA A; 2ERQ A; 3VTG A; 1BQQ M; 3KMC A; 3B8Z A; 2MLR A; 3LJG A; 4A3W A; 4PKS A; 3EDI A; 1XFX A; 4JQG A; 3DNG A; 1JK3 A; 1RMZ A; 1JH1 A; 1I73 A; 3LGP A; 1CAQ A; 3F15 A; 1TVI A; 1AYK A; 1GE6 A; 3EWJ A; 2MZI A; 4H3X A; 3HDB A; 5CZM A; 1FBL A; 4AUO A; 2AIG P; 1IAB A; #chains in the Genus database with same CATH homology 2YPT A; 4AW6 A; 1XM5 A; 4QHF A; 4IL3 A; 3CQB A; 1TVI A; 4JIU A; 1XAX A; 4JIX A; 1OZ9 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
