The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
53
|
sequence length |
152
|
structure length |
152
|
Chain Sequence |
MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQFQEESEVTIRVVDTAESHSLNLTYRGKDKPTNVLSFPFEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The ybeY protein from Escherichia coli is a metalloprotein.
pubmed doi rcsb |
| molecule keywords |
Hypothetical UPF0054 protein ybeY
|
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Escherichia coli
|
| total genus |
53
|
| structure length |
152
|
| sequence length |
152
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2004-10-01 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02130 | UPF0054 | Uncharacterized protein family UPF0054 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Collagenase (Catalytic Domain) | Metalloproteases ("zincins"), catalytic domain |
#chains in the Genus database with same CATH superfamily 1XM5 A; 1OZ9 A; 1XAX A; 1TVI A; #chains in the Genus database with same CATH topology 4AYK A; 1IAC A; 1QUA A; 1HOV A; 4HX3 A; 1BUD A; 2KRJ A; 1SU3 A; 1GXD A; 1PWP A; 5B5P A; 1AYK A; 1JAQ A; 1DTH A; 4H76 A; 3SHI A; 3P24 A; 1YP1 A; 2O3E A; 1PWQ A; 2OI0 A; 3Q2G A; 4DV8 A; 2MZH A; 1OM6 A; 5D7W A; 3KRY A; 3VTG A; 4I35 A; 4H49 A; 4WZV A; 1GKC A; 5BOY A; 3LUM A; 1JK3 A; 2D1N A; 1CGE A; 1JH1 A; 3HB2 P; 4L19 A; 1D5J A; 2A8H A; 1CQR A; 3OHL A; 3DTI A; 2FV5 A; 3MA2 A; 1EAK A; 1BQO A; 2MZI A; 4WKE A; 3KME A; 3LJZ A; 4GR8 A; 3LJG A; 1CIZ A; 3EHY A; 2XS3 A; 1Y0V A; 1K7Q A; 1K7G A; 3B92 A; 1K7I A; 4GF1 A; 3F15 A; 2ERQ A; 3EDI A; 4H3X A; 1MNC A; 2WO9 A; 5I2Z A; 1AF0 A; 1ZVX A; 4FXY P; 4IUW A; 1ZXC A; 2O36 A; 4G0D A; 1KUG A; 4PKU A; 4JP4 A; 4G9L A; 1HV5 A; 3KHI A; 3EHX A; 2JNP A; 3I7I A; 2CLT A; 1KUI A; 1BKC E; 1MMR A; 3K7N A; 4I03 A; 4XM6 A; 2E3X A; 1UEA A; 966C A; 1XFZ A; 3O64 A; 1OO9 A; 2K9C A; 1XUC A; 2OW0 A; 4H84 A; 5I4O A; 3U1R A; 1CAQ A; 2JT6 A; 1A85 A; 1ZP5 A; 830C A; 3Q2H A; 2Y6D A; 2OXW A; 4AUO A; 1ZXV A; 1ATL A; 2X3C A; 1JKY A; 1BZS A; 1R1H A; 1JAN A; 2W0D A; 3LKA A; 5L79 A; 2OW9 A; 2DDY A; 3LEA A; 1ND1 A; 3ELM A; 4WK7 A; 5CXA A; 2L0R A; 1B3D A; 5I12 A; 1KUH A; 2FV9 A; 4PKT A; 1OS2 A; 5I0L A; 1SMP A; 1J7N A; 1IAE A; 3HY9 A; 1SLN A; 4IJO A; 2WO8 A; 2MLR A; 1QIA A; 2XS4 A; 4XM7 A; 1QJI A; 3DTK A; 1S4B P; 2OZR A; 4GWN A; 1SLM A; 1IAD A; 3RTS A; 3LE9 A; 5I3M A; 2YIG A; 3F17 A; 4WF6 A; 5L7F A; 2OXU A; 1PWV A; 1IAA A; 3USN A; 1AKL A; 1KUF A; 1XFX A; 3AYU A; 1JJ9 A; 3P1V A; 3AYK A; 5B5O A; 2DDF A; 4A7B A; 1OS9 A; 1XFY A; 2WOA A; 1UMT A; 4ZR5 A; 2D1O A; 5D1U A; 5JMY A; 2J0T A; 2OVZ A; 3DTE A; 2DW0 A; 3O2X A; 4PKS A; 2V4B A; 1KAP P; 3LJT A; 3N2V A; 1XFW A; 4CTH A; 5BOT A; 2RJQ A; 2RJP A; 1HFS A; 4QKZ A; 3AIG A; 1EB6 A; 3F1A A; 4DPE A; 2OVX A; 1G12 A; 1CGL A; 1MMB A; 2OXZ A; 1OZ9 A; 3LQB A; 1FBL A; 2Y6C A; 1CGF A; 4AXQ A; 2HU6 A; 3EDZ A; 1FM1 A; 4AIG A; 1R55 A; 1XFV A; 3HDA P; 1HFC A; 4FXQ A; 1C3I A; 1IAG A; 2X3B A; 3ZUK A; 2I47 A; 4EFS A; 1JIW P; 3LK8 A; 1BM6 A; 1OMJ A; 1HY7 A; 1GE7 A; 4H30 A; 1I76 A; 2PJT A; 3LIK A; 1BKC A; 1D8M A; 4L7A A; 1ROS A; 1I1I P; 1BSW A; 5H8X A; 1YQY A; 3KEK A; 2ERO A; 1KBC A; 5BPA A; 4R3V A; 3WV3 A; 3LIR A; 3I7G A; 1Y93 A; 1B8Y A; 4L63 A; 4HMA A; 1BUV M; 1XUR A; 2CKI A; 3HBV P; 3KWV C; 4ILW D; 4GWM A; 1GKD A; 1XAX A; 2W14 A; 5I43 A; 5D3C A; 1A86 A; 2YB9 A; 1XM5 A; 2MZE A; 3F16 A; 3N2U A; 3E8R A; 4JA1 A; 1D8F A; 1R1I A; 2DW1 A; 1JAO A; 1UTZ A; 1QJJ A; 1Q3A A; 3EDG A; 4PKQ A; 3LUN A; 3ZXH A; 3KEJ A; 2DW2 A; 3TS4 A; 5CZM A; 3HDB A; 3DPF A; 3G5C A; 1GE6 A; 2JIH A; 3NX7 A; 3L0T A; 1MMQ A; 4JQG A; 2AIG P; 1CK7 A; 2POJ A; 1FLS A; 1Y8J A; 4XM8 A; 1RM8 A; 1YOU A; 2OW2 A; 1USN A; 1R54 A; 2USN A; 1UMS A; 1BQQ M; 3RTT A; 3F18 A; 3GBO A; 3LQ0 A; 4JPA A; 1CXV A; 4FVL A; 4JIJ A; 4GQL A; 1MMP A; 4ON1 A; 1GO7 P; 3EWJ A; 2W15 A; 3CKI A; 1SAT A; 2OW1 A; 1QIC A; 4L6T A; 5LAB A; 4PKW A; 4PKV A; 3DSL A; 4Q1L A; 4GUY A; 3TSK A; 5CUH A; 3DNG A; 3LGP A; 3WV1 A; 1OM8 A; 1G05 A; 2OY4 A; 2YUF A; 3G42 A; 3L0V A; 2MLS A; 3KEC A; 1XFU A; 1G9K A; 3TVC A; 4PKR A; 1G49 A; 2QPJ A; 1RMZ A; 1ZTQ A; 4DD8 A; 3LIL A; 1TVI A; 5D1S A; 5D2B A; 3HYG A; 2K2G A; 3VI1 A; 2ERP A; 3HY7 A; 3UVC A; 5D1T A; 1D7X A; 1UTT A; 2N8R A; 1JIZ A; 1BKC I; 1O0Q A; 2W12 A; 1QIB A; 4H1Q A; 4DF9 A; 2TCL A; 1BIW A; 1JAP A; 3KMC A; 1GO8 P; 2E2D A; 1I73 A; 1YCM A; 1H71 P; 3OHO A; 1OM7 A; 1ZS0 A; 1EUB A; 1KUK A; 4A3W A; 1AST A; 4GR3 A; 4XCT A; 4FU4 A; 3ZVS A; 1C7K A; 1IAB A; 3TT4 A; 3B2Z A; 3WV2 A; 3DPE A; 1PWU A; 4WKI A; 1HTD A; 1GE5 A; 3HBU P; 1SRP A; 3V96 B; 1WNI A; 3LMC A; 1O0T A; 1G4K A; 3F19 A; 456C A; 2JSD A; 1L6J A; 4GR0 A; 2Z2D A; 1XUD A; 2X7M A; 4H82 A; 4IN9 A; 3DWB A; 2SRT A; 2JT5 A; 3BA0 A; 3K7L A; 3B8Z A; 1PWW A; 2OY2 A; 2J83 A; 2AYK A; 4J4M A; 1R1J A; 4H2E A; 2X3A A; 3DL1 A; 2W13 A; 1C8T A; 3EDH A; 1DMT A; 4XBH A; 1Z3J A; #chains in the Genus database with same CATH homology 4AW6 A; 4JIU A; 1OZ9 A; 3CQB A; 1XM5 A; 4JIX A; 4QHF A; 1TVI A; 4IL3 A; 1XAX A; 2YPT A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
