2YIOA

Crystal structure of parasite sarcocystis muris microneme protein sml- 2 in complex with 1-thio-beta-d-galactose (spacegroup c2221)
Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
128
structure length
128
Chain Sequence
LDVSCFAHDKNIGSRTEQLSVVHVASAQDCMKECQALPTCSHFTYNKNSKKCHLKAGAPEFYTYTGDMTGPRSCEHNCSDACWMDGNNPLAVWDYSGQPPALCWAACMGTPGCDLYTFQGMTCKLYSQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS6 (71-75)TI1 (7-10)S5 (65-67)TIV1 (11-14)TII1 (68-71)S1 (16-18)TI2 (41-44)S4 (55-59)O1 (9-78)S2 (22-27)TI3 (50-53)S3 (46-50)AH1 (31-40)TI5 (77-80)TVIII1 (75-78)TIV2 (83-86)S9 (126-130)TI6 (87-90)TIV3 (122-125)S8 (119-123)TVIII2 (93-96)S7 (95-98)TII2 (99-102)AH2 (104-113)TII3 (114-117)TI4 (51-54)Updating...
connected with : NaN
molecule tags Sugar binding protein
publication title Pan-Modular Structure of Microneme Protein Sml-2 from Parasite Sarcocystis Muris at 1.95 A Resolution and its Complex with 1-Thio-Beta-D-Galactose.
pubmed doi rcsb
molecule keywords MICRONEME ANTIGEN L2
total genus 34
structure length 128
sequence length 128
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00024 PAN_1 PAN domain
A PF14295 PAN_4 PAN domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.180 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 2yioA02
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 2yioA01
2YILA 4R1BA 2Q8BA 4UV6A 4DURA 4Z0FA 2YIOA 4UAOA 5CS5A 2Z8WA 3SRIA 5I25A 1GMOA 1BHTA 1NK1A 3HMSA 1GMNA 2Y8RA 3HN4A 2YIPA 4Z09A 4Z0EA 4APLA 3HMTA 1HKYA 4R19A 5CS1A 4Z0DA 1YXEA 2LL3A 4APMA 4R1CA 1Z40A 4IUAA 5CT1A 2HGFA 5CS9A 3SP8A 2F83A 1W81A 2X2ZA 3HMRA 5CP9A 5CT2A 5EOKA 3ZLEA 4R1AA 1GP9A 2QJ2A 5CS3A 2QJ4A 2J8JA 1I8NA 2Z8VA 3ZWZA 2Q8AA 2J8LA 5CSQA 5EODA 2K13X 3SRJA 4A5TS 5COEA 1W8KA 2LL4M 3MKPA 5CT3A
chains in the Genus database with same CATH superfamily
4R1BA 1HPMA 4H5NA 5AQWA 5AQXA 1P0AA 3KP0A 1PTXA 4GNIA 3HN4A 2KJAA 1ICAA 5BN9A 3FZMA 4HWIA 1HJOA 1B3CA 5BPNA 2Q8AA 1ZYVA 2K35A 3MKPA 1ZYWA 3E7UX 5AR0A 3R2VA 2JDQD 3GKUA 5EXWA 4KBOA 2YIPA 2VY6A 2N2RA 1HKYA 1S3XA 3HMRA 5EOKA 2A7TA 2QWPA 2E0HA 4IO8A 5EVZA 1GMOA 2KYQA 2LJMA 1NGJA 3CW4A 1QQMA 2KBKA 1SEGA 4YIZA 3D2EB 3E7RL 3KHWA 3QFPA 1JZAA 1QQNA 2E8AA 4IUAA 3FZKA 1BMRA 2X2ZA 2QWNA 1I8NA 5AQGA 5F0XA 5CSQA 1C55A 1KV0A 5AQYA 1KAXA 2LY6A 1T0ZA 3LDNA 3SRIA 4V1DC 4KYPA 1C56A 3KOXA 2LKBA 4H5VA 1TI5A 1L4VA 2MN5A 2MBKA 1BA0A 3KOZA 1N4NA 3HSCA 3ZWZA 4UV6A 2I61A 1OZZA 5AQNA 5CS5A 5FPDA 3HMSA 4Z0EA 1K8BA 5AQUA 1LQQA 5F1XA 5CS1A 1NGCA 1SN1A 2E3FA 1CHZA 2QXLA 1T7AA 1NGAA 1NGEA 1FH3A 5AQZA 2E88A 2V7ZA 1SNBA 2GL1A 4Z09A 1BK8A 1UGLA 5CT2A 1GP9A 1BRZA 2QJ4A 1NH5A 2Z8VA 1JXCA 3KOWA 3KP1A 1AYJA 2YBRC 1ZUTA 1WWNA 2YC1C 1GPTA 1POIA 2LI7A 3I33A 1MYNA 1GMNA 2Y8RA 1OMYA 1PE4A 3CQXA 1YXEA 2YEOA 5CT1A 1NGDA 1ZU3A 2ATBA 3AY9A 2E3GA 1JKZA 2KPYA 5AQMA 3LDOA 3A8YA 1I2UA 1GPSA 2QWQA 4Z0DA 2KSKA 1JZBA 4R1CA 5AQJA 5I25A 1W81A 5AQVA 2LR3A 4FSVA 5AQOA 2E2FA 2Q8BA 5AQQA 1I6GA 4UAOA 2QW9A 4AAZA 1MR4A 5AQTA 5EX5A 3ATUA 2BUPA 4UAEF 2HGFA 1T7BA 5CP9A 2KHOA 2QWLA 3QFUA 4H5WA 2D56A 1NRAA 5FPNA 4Z0FA 1ZVEA 1ATRA 2G2KA 1AHOA 3KVGA 1T1TA 1NGBA 2KBJA 4APLA 3GDQA 1BA1A 3SP8A 4YIVA 5AQIA 1QQOA 1BCGA 3FZLA 3QMLA 5COEA 1ATSA 2QWOA 4CQKA 1VNAA 5AQRA 1NPIA 3HMTA 2LJ7A 5KK4A 1NGFA 2BRZA 5CS9A 2N69A 3IUCA 2QJ2A 3JXUA 3GL1A 3FE1A 1SN4A 3D2EA 5FPEA 1NGGA 2Z8WA 3C7NB 1YUWA 2GMOA 2LL3A 2N2QA 4UJ0A 3D2FB 1XRSB 1DQ7A 3ZLEA 4FL9A 1NRBA 5EY4A 5EODA 2NY8X 5AQSA 1T7EA 1ZVGA 1W8KA 2YILA 1VNBA 3FZFA 5AQLA 1WT7A 1KAZA 3LDQA 3QI7A 1NK1A 3KC6A 3FZHA 2KL5A 2N66A 4H5TA 4APMA 3SRJA 1I2VA 2F83A 5CY0A 2B68A 1PX9A 4R1AA 3L56A 3PSMA 2J8LA 2K13X 4UADE 1BUPA 2M8BB 5AQKA 2B3CA 4H5RA 2LT8A 2LL4M 1KAYA 2LY5A 3LDPA 1LQIA 1DJTA 5FPMA 3BK3C 3L6QA 1NGIA 1CN2A 5AQHA 2QWRA 3ATVA 3LDLA 5BPMA 4UAFE 5AQFA 5CS3A 2J8JA 2LN8A 3KOYA 1ZFUA 1HX1A 2SN3A 5AQPA 1WMTA 2YIOA 1LQHA 2ASCA 2KBHA 4HE7A 2KGQA 1DKGD 2MZ0A 2NY9X 4A5TS 2QWMA 5CT3A 1NGHA 4DURA 3M3ZA 1B7DA 5F2RA 1NE5A 3C7NA 5BPLA 1BHTA 4HHFA 5BN8A 3D2FA 1P00A 4R19A 1Z40A 4AB0A 3SF4D 1I6FA 3L4IA 4AEIA
chains in the Genus database with same CATH topology
2YILA 4R1BA 2Q8BA 1HPMA 4H5NA 5AQWA 5AQQA 4UV6A 5AQNA 3FZFA 5AQLA 5AQXA 4UAOA 5CS5A 5FPDA 1KAZA 3LDQA 4GNIA 3QI7A 1NK1A 3HMSA 3HN4A 3KC6A 4Z0EA 3FZHA 2QW9A 2KL5A 5AQUA 5F1XA 5CS1A 5AQTA 4H5TA 5BN9A 3FZMA 4HWIA 1HJOA 5EX5A 5BPNA 1NGCA 2BUPA 3ATUA 4UAEF 2F83A 2HGFA 5CP9A 3SRJA 4R1AA 3L56A 2QXLA 2KHOA 2QWLA 2Q8AA 2J8LA 2K13X 4UADE 1BUPA 2K35A 3QFUA 5AQKA 4H5RA 4H5WA 2LL4M 2D56A 3MKPA 1KAYA 3LDPA 5FPNA 1NGAA 5AR0A 4Z0FA 1ATRA 3R2VA 2JDQD 1NGEA 5FPMA 5AQZA 2E88A 2V7ZA 3KVGA 3BK3C 3L6QA 1NGIA 1NGBA 5EXWA 4Z09A 4KBOA 2YIPA 2VY6A 5AQHA 2QWRA 4APLA 1HKYA 3GDQA 4APMA 3ATVA 1S3XA 1BA1A 3SP8A 3LDLA 3HMRA 5AQIA 5BPMA 5CT2A 4YIVA 5EOKA 4UAFE 5AQFA 1GP9A 2QWPA 2QJ4A 1QQOA 2J8JA 2LN8A 2Z8VA 5CS3A 4IO8A 3FZLA 3QMLA 5EVZA 5COEA 1ATSA 1GMOA 1HX1A 2QWOA 1NGJA 5AQPA 3CW4A 1QQMA 2YIOA 4YIZA 3D2EB 5AQRA 1POIA 3I33A 3KHWA 1GMNA 3QFPA 2Y8RA 3HMTA 3CQXA 1QQNA 1YXEA 2E8AA 5CT1A 1NGFA 4IUAA 3FZKA 5CS9A 2X2ZA 1NGDA 2QWNA 1DKGD 3IUCA 3AY9A 2QJ2A 1I8NA 3JXUA 5AQGA 5F0XA 5CSQA 4A5TS 2QWMA 5AQYA 3GL1A 1KAXA 5CT3A 1NGHA 4DURA 3FE1A 3M3ZA 3D2EA 3LDNA 5AQMA 5F2RA 5FPEA 3C7NA 1NGGA 2Z8WA 3LDOA 3SRIA 5BPLA 3A8YA 1BHTA 5BN8A 3D2FA 3C7NB 1YUWA 2QWQA 4R19A 4Z0DA 2GMOA 2LL3A 4R1CA 3D2FB 4H5VA 1Z40A 5AQJA 5I25A 1W81A 3SF4D 3ZLEA 4FL9A 5EY4A 5AQVA 5AQSA 3L4IA 5EODA 2MN5A 4FSVA 5AQOA 2MBKA 1BA0A 3HSCA 2E2FA 1W8KA 3ZWZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YIL A;  4R1B A;  2Q8B A;  4UV6 A;  4DUR A;  4Z0F A;  2YIO A;  4UAO A;  5CS5 A;  2Z8W A;  3SRI A;  5I25 A;  1GMO A;  1BHT A;  1NK1 A;  3HMS A;  1GMN A;  2Y8R A;  3HN4 A;  2YIP A;  4Z09 A;  4Z0E A;  4APL A;  3HMT A;  1HKY A;  4R19 A;  5CS1 A;  4Z0D A;  1YXE A;  2LL3 A;  4APM A;  4R1C A;  1Z40 A;  4IUA A;  5CT1 A;  2HGF A;  5CS9 A;  3SP8 A;  2F83 A;  1W81 A;  2X2Z A;  3HMR A;  5CP9 A;  5CT2 A;  5EOK A;  3ZLE A;  4R1A A;  1GP9 A;  2QJ2 A;  5CS3 A;  2QJ4 A;  2J8J A;  1I8N A;  2Z8V A;  3ZWZ A;  2Q8A A;  2J8L A;  5CSQ A;  5EOD A;  2K13 X;  3SRJ A;  4A5T S;  5COE A;  1W8K A;  2LL4 M;  3MKP A;  5CT3 A; 
#chains in the Genus database with same CATH topology
 4R1B A;  1HPM A;  4H5N A;  5AQW A;  5AQX A;  1P0A A;  3KP0 A;  1PTX A;  4GNI A;  3HN4 A;  2KJA A;  1ICA A;  5BN9 A;  3FZM A;  4HWI A;  1HJO A;  1B3C A;  5BPN A;  2Q8A A;  1ZYV A;  2K35 A;  3MKP A;  1ZYW A;  3E7U X;  5AR0 A;  3R2V A;  2JDQ D;  3GKU A;  5EXW A;  4KBO A;  2YIP A;  2VY6 A;  2N2R A;  1HKY A;  1S3X A;  3HMR A;  5EOK A;  2A7T A;  2QWP A;  2E0H A;  4IO8 A;  5EVZ A;  1GMO A;  2KYQ A;  2LJM A;  1NGJ A;  3CW4 A;  1QQM A;  2KBK A;  1SEG A;  4YIZ A;  3D2E B;  3E7R L;  3KHW A;  3QFP A;  1JZA A;  1QQN A;  2E8A A;  4IUA A;  3FZK A;  1BMR A;  2X2Z A;  2QWN A;  1I8N A;  5AQG A;  5F0X A;  5CSQ A;  1C55 A;  1KV0 A;  5AQY A;  1KAX A;  2LY6 A;  1T0Z A;  3LDN A;  3SRI A;  4V1D C;  4KYP A;  1C56 A;  3KOX A;  2LKB A;  4H5V A;  1TI5 A;  1L4V A;  2MN5 A;  2MBK A;  1BA0 A;  3KOZ A;  1N4N A;  3HSC A;  3ZWZ A;  4UV6 A;  2I61 A;  1OZZ A;  5AQN A;  5CS5 A;  5FPD A;  3HMS A;  4Z0E A;  1K8B A;  5AQU A;  1LQQ A;  5F1X A;  5CS1 A;  1NGC A;  1SN1 A;  2E3F A;  1CHZ A;  2QXL A;  1T7A A;  1NGA A;  1NGE A;  1FH3 A;  5AQZ A;  2E88 A;  2V7Z A;  1SNB A;  2GL1 A;  4Z09 A;  1BK8 A;  1UGL A;  5CT2 A;  1GP9 A;  1BRZ A;  2QJ4 A;  1NH5 A;  2Z8V A;  1JXC A;  3KOW A;  3KP1 A;  1AYJ A;  2YBR C;  1ZUT A;  1WWN A;  2YC1 C;  1GPT A;  1POI A;  2LI7 A;  3I33 A;  1MYN A;  1GMN A;  2Y8R A;  1OMY A;  1PE4 A;  3CQX A;  1YXE A;  2YEO A;  5CT1 A;  1NGD A;  1ZU3 A;  2ATB A;  3AY9 A;  2E3G A;  1JKZ A;  2KPY A;  5AQM A;  3LDO A;  3A8Y A;  1I2U A;  1GPS A;  2QWQ A;  4Z0D A;  2KSK A;  1JZB A;  4R1C A;  5AQJ A;  5I25 A;  1W81 A;  5AQV A;  2LR3 A;  4FSV A;  5AQO A;  2E2F A;  2Q8B A;  5AQQ A;  1I6G A;  4UAO A;  2QW9 A;  4AAZ A;  1MR4 A;  5AQT A;  5EX5 A;  3ATU A;  2BUP A;  4UAE F;  2HGF A;  1T7B A;  5CP9 A;  2KHO A;  2QWL A;  3QFU A;  4H5W A;  2D56 A;  1NRA A;  5FPN A;  4Z0F A;  1ZVE A;  1ATR A;  2G2K A;  1AHO A;  3KVG A;  1T1T A;  1NGB A;  2KBJ A;  4APL A;  3GDQ A;  1BA1 A;  3SP8 A;  4YIV A;  5AQI A;  1QQO A;  1BCG A;  3FZL A;  3QML A;  5COE A;  1ATS A;  2QWO A;  4CQK A;  1VNA A;  5AQR A;  1NPI A;  3HMT A;  2LJ7 A;  5KK4 A;  1NGF A;  2BRZ A;  5CS9 A;  2N69 A;  3IUC A;  2QJ2 A;  3JXU A;  3GL1 A;  3FE1 A;  1SN4 A;  3D2E A;  5FPE A;  1NGG A;  2Z8W A;  3C7N B;  1YUW A;  2GMO A;  2LL3 A;  2N2Q A;  4UJ0 A;  3D2F B;  1XRS B;  1DQ7 A;  3ZLE A;  4FL9 A;  1NRB A;  5EY4 A;  5EOD A;  2NY8 X;  5AQS A;  1T7E A;  1ZVG A;  1W8K A;  2YIL A;  1VNB A;  3FZF A;  5AQL A;  1WT7 A;  1KAZ A;  3LDQ A;  3QI7 A;  1NK1 A;  3KC6 A;  3FZH A;  2KL5 A;  2N66 A;  4H5T A;  4APM A;  3SRJ A;  1I2V A;  2F83 A;  5CY0 A;  2B68 A;  1PX9 A;  4R1A A;  3L56 A;  3PSM A;  2J8L A;  2K13 X;  4UAD E;  1BUP A;  2M8B B;  5AQK A;  2B3C A;  4H5R A;  2LT8 A;  2LL4 M;  1KAY A;  2LY5 A;  3LDP A;  1LQI A;  1DJT A;  5FPM A;  3BK3 C;  3L6Q A;  1NGI A;  1CN2 A;  5AQH A;  2QWR A;  3ATV A;  3LDL A;  5BPM A;  4UAF E;  5AQF A;  5CS3 A;  2J8J A;  2LN8 A;  3KOY A;  1ZFU A;  1HX1 A;  2SN3 A;  5AQP A;  1WMT A;  2YIO A;  1LQH A;  2ASC A;  2KBH A;  4HE7 A;  2KGQ A;  1DKG D;  2MZ0 A;  2NY9 X;  4A5T S;  2QWM A;  5CT3 A;  1NGH A;  4DUR A;  3M3Z A;  1B7D A;  5F2R A;  1NE5 A;  3C7N A;  5BPL A;  1BHT A;  4HHF A;  5BN8 A;  3D2F A;  1P00 A;  4R19 A;  1Z40 A;  4AB0 A;  3SF4 D;  1I6F A;  3L4I A;  4AEI A; 
#chains in the Genus database with same CATH homology
 2YIL A;  4R1B A;  2Q8B A;  1HPM A;  4H5N A;  5AQW A;  5AQQ A;  4UV6 A;  5AQN A;  3FZF A;  5AQL A;  5AQX A;  4UAO A;  5CS5 A;  5FPD A;  1KAZ A;  3LDQ A;  4GNI A;  3QI7 A;  1NK1 A;  3HMS A;  3HN4 A;  3KC6 A;  4Z0E A;  3FZH A;  2QW9 A;  2KL5 A;  5AQU A;  5F1X A;  5CS1 A;  5AQT A;  4H5T A;  5BN9 A;  3FZM A;  4HWI A;  1HJO A;  5EX5 A;  5BPN A;  1NGC A;  2BUP A;  3ATU A;  4UAE F;  2F83 A;  2HGF A;  5CP9 A;  3SRJ A;  4R1A A;  3L56 A;  2QXL A;  2KHO A;  2QWL A;  2Q8A A;  2J8L A;  2K13 X;  4UAD E;  1BUP A;  2K35 A;  3QFU A;  5AQK A;  4H5R A;  4H5W A;  2LL4 M;  2D56 A;  3MKP A;  1KAY A;  3LDP A;  5FPN A;  1NGA A;  5AR0 A;  4Z0F A;  1ATR A;  3R2V A;  2JDQ D;  1NGE A;  5FPM A;  5AQZ A;  2E88 A;  2V7Z A;  3KVG A;  3BK3 C;  3L6Q A;  1NGI A;  1NGB A;  5EXW A;  4Z09 A;  4KBO A;  2YIP A;  2VY6 A;  5AQH A;  2QWR A;  4APL A;  1HKY A;  3GDQ A;  4APM A;  3ATV A;  1S3X A;  1BA1 A;  3SP8 A;  3LDL A;  3HMR A;  5AQI A;  5BPM A;  5CT2 A;  4YIV A;  5EOK A;  4UAF E;  5AQF A;  1GP9 A;  2QWP A;  2QJ4 A;  1QQO A;  2J8J A;  2LN8 A;  2Z8V A;  5CS3 A;  4IO8 A;  3FZL A;  3QML A;  5EVZ A;  5COE A;  1ATS A;  1GMO A;  1HX1 A;  2QWO A;  1NGJ A;  5AQP A;  3CW4 A;  1QQM A;  2YIO A;  4YIZ A;  3D2E B;  5AQR A;  1POI A;  3I33 A;  3KHW A;  1GMN A;  3QFP A;  2Y8R A;  3HMT A;  3CQX A;  1QQN A;  1YXE A;  2E8A A;  5CT1 A;  1NGF A;  4IUA A;  3FZK A;  5CS9 A;  2X2Z A;  1NGD A;  2QWN A;  1DKG D;  3IUC A;  3AY9 A;  2QJ2 A;  1I8N A;  3JXU A;  5AQG A;  5F0X A;  5CSQ A;  4A5T S;  2QWM A;  5AQY A;  3GL1 A;  1KAX A;  5CT3 A;  1NGH A;  4DUR A;  3FE1 A;  3M3Z A;  3D2E A;  3LDN A;  5AQM A;  5F2R A;  5FPE A;  3C7N A;  1NGG A;  2Z8W A;  3LDO A;  3SRI A;  5BPL A;  3A8Y A;  1BHT A;  5BN8 A;  3D2F A;  3C7N B;  1YUW A;  2QWQ A;  4R19 A;  4Z0D A;  2GMO A;  2LL3 A;  4R1C A;  3D2F B;  4H5V A;  1Z40 A;  5AQJ A;  5I25 A;  1W81 A;  3SF4 D;  3ZLE A;  4FL9 A;  5EY4 A;  5AQV A;  5AQS A;  3L4I A;  5EOD A;  2MN5 A;  4FSV A;  5AQO A;  2MBK A;  1BA0 A;  3HSC A;  2E2F A;  1W8K A;  3ZWZ A; 
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