2YIPA

Crystal structure of parasite sarcocystis muris microneme protein sml- 2 in complex with 1-thio-beta-d-galactose (spacegroup p212121)
Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
131
structure length
131
Chain Sequence
QLDVSCFAHDKNIGSRTEQLSVVHVASAQDCMKECQALPTCSHFTYNKNSKKCHLKAGAPEFYTYTGDMTGPRSCEHNCSDACWMDGNNPLAVWDYSGQPPALCWAACMGTPGCDLYTFQGMTCKLYSQTS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS6 (71-75)TI1 (7-10)TII1 (68-71)TIV1 (11-14)O1 (9-78)TI2 (41-44)S2 (22-27)S3 (46-50)AH1 (31-40)S5 (65-67)TVIII1 (75-78)TI4 (77-80)O4 (82-86)S8 (119-121)TII'1 (123-126)TI5 (87-90)TVIII2 (83-86)S9 (126-130)TIV3 (93-96)S7 (95-98)TII2 (99-102)O5 (107-127)AH2 (104-113)TII3 (114-117)S1 (16-18)S4 (55-59)TI3 (51-54)TIV2 (50-53)Updating...
connected with : NaN
molecule tags Sugar binding protein
publication title Pan-Modular Structure of Microneme Protein Sml-2 from Parasite Sarcocystis Muris at 1.95 A Resolution and its Complex with 1-Thio-Beta-D-Galactose.
pubmed doi rcsb
molecule keywords MICRONEME ANTIGEN L2
total genus 35
structure length 131
sequence length 131
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2011-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00024 PAN_1 PAN domain
A PF14295 PAN_4 PAN domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.180 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 2yipA02
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 2yipA01
3SRJA 4A5TS 3HMRA 4Z0EA 2Z8VA 1W81A 5CT3A 4APMA 5CS5A 2J8LA 2K13X 3ZWZA 2J8JA 4Z0DA 4R1AA 2HGFA 2YIOA 1YXEA 2LL3A 3SRIA 2YIPA 1I8NA 2Q8BA 4Z0FA 2QJ2A 2Q8AA 5I25A 3HN4A 5CSQA 1GMNA 2Y8RA 4UV6A 2F83A 4R1CA 5CT1A 1HKYA 3HMTA 5CS3A 3MKPA 5EODA 4DURA 4UAOA 3ZLEA 4Z09A 1W8KA 4IUAA 2LL4M 4R1BA 5CP9A 1BHTA 5CS1A 4APLA 2YILA 1GMOA 2QJ4A 5CT2A 3HMSA 1NK1A 1Z40A 1GP9A 2X2ZA 4R19A 2Z8WA 5EOKA 5COEA 5CS9A 3SP8A
chains in the Genus database with same CATH superfamily
2KGQA 1ATRA 1KAZA 1NGDA 1UGLA 1NRBA 2E0HA 1BMRA 1YXEA 1NE5A 2QJ2A 5BPNA 3IUCA 1WMTA 3MKPA 4UAEF 5EVZA 1TI5A 1BA0A 1C55A 1CN2A 1T7EA 2LT8A 1T7BA 4HWIA 2KBHA 4H5NA 5COEA 3FZHA 4H5RA 1DQ7A 3BK3C 4R1AA 1B3CA 1NGHA 1DJTA 1DKGD 2B3CA 4DURA 4CQKA 2KJAA 5BN8A 1HX1A 4H5VA 1GP9A 2B68A 4GNIA 5AQOA 1SN1A 1T7AA 1ATSA 1W81A 1KAXA 4APMA 1ZFUA 2JDQD 1N4NA 3SRIA 1LQHA 1C56A 3D2FA 5CS1A 4AEIA 2KBKA 1NK1A 2LJMA 3LDNA 4V1DC 2LKBA 3KOWA 1NGFA 1ZVEA 1LQQA 1LQIA 5CY0A 1SN4A 2YIOA 1POIA 1NGJA 3I33A 3FZKA 5BPLA 3ATUA 3JXUA 2LJ7A 4R1CA 1ZU3A 2GMOA 3PSMA 3FZMA 2E3FA 3E7UX 3E7RL 1HJOA 2LY6A 1NGIA 3M3ZA 5AQHA 2N69A 1BUPA 2I61A 1GPTA 5AQLA 1HKYA 2M8BB 1ZYVA 4UJ0A 2YILA 2SN3A 4YIZA 1SNBA 5CS9A 4Z0EA 2QWPA 1GPSA 5CT3A 3ATVA 3LDPA 2YEOA 2J8JA 2HGFA 2ATBA 2YIPA 1I8NA 2Q8BA 2MN5A 5AQNA 1P00A 3L4IA 1HPMA 2KSKA 1NPIA 2D56A 5F0XA 5KK4A 4YIVA 5F2RA 5AQJA 2X2ZA 2NY9X 4R19A 1ICAA 5EOKA 1NRAA 3KC6A 1CHZA 5AQKA 2E3GA 2BRZA 3D2EA 2NY8X 3AY9A 4H5TA 3HSCA 2F83A 5CT1A 3ZLEA 5EXWA 1PE4A 2E88A 4UADE 2QWNA 3FZFA 2QWQA 4UAFE 3ZWZA 2ASCA 2KL5A 3GDQA 1NGGA 1NGBA 1AHOA 4Z09A 4APLA 5CT2A 1I2VA 1PX9A 2Z8WA 3QI7A 1MYNA 2E2FA 3QFUA 3HMRA 4FSVA 2J8LA 3KP1A 1VNBA 1SEGA 2QW9A 4Z0FA 3SF4D 5EX5A 4IO8A 4UV6A 3C7NA 1BHTA 3HMSA 2KYQA 3FZLA 1NGEA 1KAYA 1FH3A 2YBRC 2KPYA 2Q8AA 3HN4A 5CSQA 1S3XA 1W8KA 4IUAA 1ZYWA 2QJ4A 3D2FB 4AB0A 5AQSA 3LDQA 3SRJA 4A5TS 3LDOA 5FPNA 1B7DA 3L6QA 2A7TA 2E8AA 3L56A 1BRZA 3GL1A 4KYPA 5EY4A 5AQGA 1JZAA 3CQXA 4KBOA 2G2KA 1BCGA 2MZ0A 5AQUA 3KP0A 3QMLA 3KOYA 2KHOA 2K35A 1VNAA 2QXLA 2LL4M 1ZUTA 1AYJA 1BA1A 5AR0A 1WWNA 2K13X 5AQTA 2LL3A 1NH5A 5AQFA 2YC1C 3KHWA 1JKZA 4HE7A 3HMTA 1T0ZA 3FE1A 5EODA 3CW4A 5AQRA 2QWOA 1OMYA 1PTXA 3KVGA 1L4VA 1K8BA 5AQMA 3A8YA 3LDLA 5F1XA 5FPDA 3R2VA 1NGAA 5BPMA 4FL9A 1QQOA 1ZVGA 1BK8A 5AQPA 3KOXA 3SP8A 1I6FA 1QQMA 5AQIA 2BUPA 2QWRA 2LN8A 2VY6A 1GMOA 2N2RA 1JXCA 1I2UA 1P0AA 2LR3A 5AQXA 4HHFA 5FPMA 2LI7A 2LY5A 5AQQA 5FPEA 2QWMA 2N66A 3D2EB 5CS3A 4UAOA 3GKUA 2QWLA 4R1BA 1QQNA 3KOZA 1WT7A 5CS5A 1OZZA 1NGCA 5I25A 2Y8RA 2GL1A 5AQWA 1XRSB 1T1TA 5AQZA 1MR4A 2KBJA 2N2QA 1Z40A 1I6GA 2Z8VA 1JZBA 3QFPA 5AQYA 1KV0A 2V7ZA 2MBKA 4H5WA 4Z0DA 5BN9A 1GMNA 5CP9A 1YUWA 4AAZA 3C7NB 5AQVA
chains in the Genus database with same CATH topology
3QFUA 3HMRA 1ATRA 5AQMA 3A8YA 3LDLA 5F1XA 5FPDA 1HJOA 3R2VA 1KAZA 1NGAA 5BPMA 4FL9A 4FSVA 2J8LA 1NGDA 1QQOA 1NGIA 3M3ZA 5AQHA 5AQPA 1YXEA 1BUPA 2QW9A 3SP8A 4Z0FA 2QJ2A 3SF4D 5EX5A 4IO8A 1QQMA 5AQLA 5AQIA 5BPNA 3IUCA 4UV6A 1HKYA 2BUPA 2QWRA 3MKPA 4UAEF 3C7NA 5EVZA 2LN8A 1BA0A 1BHTA 2VY6A 2YILA 1GMOA 3HMSA 4YIZA 4HWIA 4H5NA 5COEA 5CS9A 3FZHA 3FZLA 4Z0EA 2QWPA 5CT3A 4H5RA 5FPMA 1NGEA 5AQXA 3ATVA 3BK3C 3LDPA 2J8JA 4R1AA 1KAYA 2HGFA 1NGHA 5AQQA 5FPEA 2YIPA 1I8NA 2Q8BA 2MN5A 2Q8AA 5AQNA 2QWMA 1DKGD 3HN4A 5CSQA 3L4IA 1HPMA 3D2EB 5CS3A 2D56A 1S3XA 4DURA 4UAOA 5BN8A 5F0XA 2QWLA 1W8KA 4IUAA 4R1BA 1HX1A 2QJ4A 5F2RA 4YIVA 5AQJA 3D2FB 4H5VA 1GP9A 5AQOA 4GNIA 2X2ZA 4R19A 5AQSA 5EOKA 3LDQA 3SRJA 1ATSA 4A5TS 3KC6A 3LDOA 1W81A 1KAXA 1QQNA 5AQKA 4APMA 5CS5A 5FPNA 3D2EA 3L6QA 2JDQD 1NGCA 2E8AA 3AY9A 3L56A 4H5TA 3SRIA 3HSCA 3GL1A 5EY4A 5I25A 5AQGA 3CQXA 4KBOA 2Y8RA 2F83A 5AQUA 5AQWA 5CT1A 3D2FA 3QMLA 5AQZA 3ZLEA 2KHOA 2K35A 2QXLA 2LL4M 5CS1A 5EXWA 1NK1A 1Z40A 3LDNA 2E88A 4UADE 2QWNA 3FZFA 1BA1A 1NGFA 2Z8VA 3QFPA 5AR0A 5AQYA 2QWQA 4UAFE 2K13X 3ZWZA 2V7ZA 2MBKA 4H5WA 4Z0DA 2YIOA 5AQTA 1POIA 2LL3A 1NGJA 2KL5A 3I33A 3FZKA 5AQFA 5BPLA 3KHWA 3ATUA 3GDQA 5BN9A 1GMNA 1NGGA 3JXUA 4R1CA 1NGBA 3HMTA 2GMOA 3FE1A 3FZMA 3CW4A 5EODA 5AQRA 2QWOA 4Z09A 3KVGA 5CP9A 4APLA 5CT2A 2Z8WA 3QI7A 1YUWA 3C7NB 5AQVA 2E2FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SRJ A;  4A5T S;  3HMR A;  4Z0E A;  2Z8V A;  1W81 A;  5CT3 A;  4APM A;  5CS5 A;  2J8L A;  2K13 X;  3ZWZ A;  2J8J A;  4Z0D A;  4R1A A;  2HGF A;  2YIO A;  1YXE A;  2LL3 A;  3SRI A;  2YIP A;  1I8N A;  2Q8B A;  4Z0F A;  2QJ2 A;  2Q8A A;  5I25 A;  3HN4 A;  5CSQ A;  1GMN A;  2Y8R A;  4UV6 A;  2F83 A;  4R1C A;  5CT1 A;  1HKY A;  3HMT A;  5CS3 A;  3MKP A;  5EOD A;  4DUR A;  4UAO A;  3ZLE A;  4Z09 A;  1W8K A;  4IUA A;  2LL4 M;  4R1B A;  5CP9 A;  1BHT A;  5CS1 A;  4APL A;  2YIL A;  1GMO A;  2QJ4 A;  5CT2 A;  3HMS A;  1NK1 A;  1Z40 A;  1GP9 A;  2X2Z A;  4R19 A;  2Z8W A;  5EOK A;  5COE A;  5CS9 A;  3SP8 A; 
#chains in the Genus database with same CATH topology
 2KGQ A;  1ATR A;  1KAZ A;  1NGD A;  1UGL A;  1NRB A;  2E0H A;  1BMR A;  1YXE A;  1NE5 A;  2QJ2 A;  5BPN A;  3IUC A;  1WMT A;  3MKP A;  4UAE F;  5EVZ A;  1TI5 A;  1BA0 A;  1C55 A;  1CN2 A;  1T7E A;  2LT8 A;  1T7B A;  4HWI A;  2KBH A;  4H5N A;  5COE A;  3FZH A;  4H5R A;  1DQ7 A;  3BK3 C;  4R1A A;  1B3C A;  1NGH A;  1DJT A;  1DKG D;  2B3C A;  4DUR A;  4CQK A;  2KJA A;  5BN8 A;  1HX1 A;  4H5V A;  1GP9 A;  2B68 A;  4GNI A;  5AQO A;  1SN1 A;  1T7A A;  1ATS A;  1W81 A;  1KAX A;  4APM A;  1ZFU A;  2JDQ D;  1N4N A;  3SRI A;  1LQH A;  1C56 A;  3D2F A;  5CS1 A;  4AEI A;  2KBK A;  1NK1 A;  2LJM A;  3LDN A;  4V1D C;  2LKB A;  3KOW A;  1NGF A;  1ZVE A;  1LQQ A;  1LQI A;  5CY0 A;  1SN4 A;  2YIO A;  1POI A;  1NGJ A;  3I33 A;  3FZK A;  5BPL A;  3ATU A;  3JXU A;  2LJ7 A;  4R1C A;  1ZU3 A;  2GMO A;  3PSM A;  3FZM A;  2E3F A;  3E7U X;  3E7R L;  1HJO A;  2LY6 A;  1NGI A;  3M3Z A;  5AQH A;  2N69 A;  1BUP A;  2I61 A;  1GPT A;  5AQL A;  1HKY A;  2M8B B;  1ZYV A;  4UJ0 A;  2YIL A;  2SN3 A;  4YIZ A;  1SNB A;  5CS9 A;  4Z0E A;  2QWP A;  1GPS A;  5CT3 A;  3ATV A;  3LDP A;  2YEO A;  2J8J A;  2HGF A;  2ATB A;  2YIP A;  1I8N A;  2Q8B A;  2MN5 A;  5AQN A;  1P00 A;  3L4I A;  1HPM A;  2KSK A;  1NPI A;  2D56 A;  5F0X A;  5KK4 A;  4YIV A;  5F2R A;  5AQJ A;  2X2Z A;  2NY9 X;  4R19 A;  1ICA A;  5EOK A;  1NRA A;  3KC6 A;  1CHZ A;  5AQK A;  2E3G A;  2BRZ A;  3D2E A;  2NY8 X;  3AY9 A;  4H5T A;  3HSC A;  2F83 A;  5CT1 A;  3ZLE A;  5EXW A;  1PE4 A;  2E88 A;  4UAD E;  2QWN A;  3FZF A;  2QWQ A;  4UAF E;  3ZWZ A;  2ASC A;  2KL5 A;  3GDQ A;  1NGG A;  1NGB A;  1AHO A;  4Z09 A;  4APL A;  5CT2 A;  1I2V A;  1PX9 A;  2Z8W A;  3QI7 A;  1MYN A;  2E2F A;  3QFU A;  3HMR A;  4FSV A;  2J8L A;  3KP1 A;  1VNB A;  1SEG A;  2QW9 A;  4Z0F A;  3SF4 D;  5EX5 A;  4IO8 A;  4UV6 A;  3C7N A;  1BHT A;  3HMS A;  2KYQ A;  3FZL A;  1NGE A;  1KAY A;  1FH3 A;  2YBR C;  2KPY A;  2Q8A A;  3HN4 A;  5CSQ A;  1S3X A;  1W8K A;  4IUA A;  1ZYW A;  2QJ4 A;  3D2F B;  4AB0 A;  5AQS A;  3LDQ A;  3SRJ A;  4A5T S;  3LDO A;  5FPN A;  1B7D A;  3L6Q A;  2A7T A;  2E8A A;  3L56 A;  1BRZ A;  3GL1 A;  4KYP A;  5EY4 A;  5AQG A;  1JZA A;  3CQX A;  4KBO A;  2G2K A;  1BCG A;  2MZ0 A;  5AQU A;  3KP0 A;  3QML A;  3KOY A;  2KHO A;  2K35 A;  1VNA A;  2QXL A;  2LL4 M;  1ZUT A;  1AYJ A;  1BA1 A;  5AR0 A;  1WWN A;  2K13 X;  5AQT A;  2LL3 A;  1NH5 A;  5AQF A;  2YC1 C;  3KHW A;  1JKZ A;  4HE7 A;  3HMT A;  1T0Z A;  3FE1 A;  5EOD A;  3CW4 A;  5AQR A;  2QWO A;  1OMY A;  1PTX A;  3KVG A;  1L4V A;  1K8B A;  5AQM A;  3A8Y A;  3LDL A;  5F1X A;  5FPD A;  3R2V A;  1NGA A;  5BPM A;  4FL9 A;  1QQO A;  1ZVG A;  1BK8 A;  5AQP A;  3KOX A;  3SP8 A;  1I6F A;  1QQM A;  5AQI A;  2BUP A;  2QWR A;  2LN8 A;  2VY6 A;  1GMO A;  2N2R A;  1JXC A;  1I2U A;  1P0A A;  2LR3 A;  5AQX A;  4HHF A;  5FPM A;  2LI7 A;  2LY5 A;  5AQQ A;  5FPE A;  2QWM A;  2N66 A;  3D2E B;  5CS3 A;  4UAO A;  3GKU A;  2QWL A;  4R1B A;  1QQN A;  3KOZ A;  1WT7 A;  5CS5 A;  1OZZ A;  1NGC A;  5I25 A;  2Y8R A;  2GL1 A;  5AQW A;  1XRS B;  1T1T A;  5AQZ A;  1MR4 A;  2KBJ A;  2N2Q A;  1Z40 A;  1I6G A;  2Z8V A;  1JZB A;  3QFP A;  5AQY A;  1KV0 A;  2V7Z A;  2MBK A;  4H5W A;  4Z0D A;  5BN9 A;  1GMN A;  5CP9 A;  1YUW A;  4AAZ A;  3C7N B;  5AQV A; 
#chains in the Genus database with same CATH homology
 3QFU A;  3HMR A;  1ATR A;  5AQM A;  3A8Y A;  3LDL A;  5F1X A;  5FPD A;  1HJO A;  3R2V A;  1KAZ A;  1NGA A;  5BPM A;  4FL9 A;  4FSV A;  2J8L A;  1NGD A;  1QQO A;  1NGI A;  3M3Z A;  5AQH A;  5AQP A;  1YXE A;  1BUP A;  2QW9 A;  3SP8 A;  4Z0F A;  2QJ2 A;  3SF4 D;  5EX5 A;  4IO8 A;  1QQM A;  5AQL A;  5AQI A;  5BPN A;  3IUC A;  4UV6 A;  1HKY A;  2BUP A;  2QWR A;  3MKP A;  4UAE F;  3C7N A;  5EVZ A;  2LN8 A;  1BA0 A;  1BHT A;  2VY6 A;  2YIL A;  1GMO A;  3HMS A;  4YIZ A;  4HWI A;  4H5N A;  5COE A;  5CS9 A;  3FZH A;  3FZL A;  4Z0E A;  2QWP A;  5CT3 A;  4H5R A;  5FPM A;  1NGE A;  5AQX A;  3ATV A;  3BK3 C;  3LDP A;  2J8J A;  4R1A A;  1KAY A;  2HGF A;  1NGH A;  5AQQ A;  5FPE A;  2YIP A;  1I8N A;  2Q8B A;  2MN5 A;  2Q8A A;  5AQN A;  2QWM A;  1DKG D;  3HN4 A;  5CSQ A;  3L4I A;  1HPM A;  3D2E B;  5CS3 A;  2D56 A;  1S3X A;  4DUR A;  4UAO A;  5BN8 A;  5F0X A;  2QWL A;  1W8K A;  4IUA A;  4R1B A;  1HX1 A;  2QJ4 A;  5F2R A;  4YIV A;  5AQJ A;  3D2F B;  4H5V A;  1GP9 A;  5AQO A;  4GNI A;  2X2Z A;  4R19 A;  5AQS A;  5EOK A;  3LDQ A;  3SRJ A;  1ATS A;  4A5T S;  3KC6 A;  3LDO A;  1W81 A;  1KAX A;  1QQN A;  5AQK A;  4APM A;  5CS5 A;  5FPN A;  3D2E A;  3L6Q A;  2JDQ D;  1NGC A;  2E8A A;  3AY9 A;  3L56 A;  4H5T A;  3SRI A;  3HSC A;  3GL1 A;  5EY4 A;  5I25 A;  5AQG A;  3CQX A;  4KBO A;  2Y8R A;  2F83 A;  5AQU A;  5AQW A;  5CT1 A;  3D2F A;  3QML A;  5AQZ A;  3ZLE A;  2KHO A;  2K35 A;  2QXL A;  2LL4 M;  5CS1 A;  5EXW A;  1NK1 A;  1Z40 A;  3LDN A;  2E88 A;  4UAD E;  2QWN A;  3FZF A;  1BA1 A;  1NGF A;  2Z8V A;  3QFP A;  5AR0 A;  5AQY A;  2QWQ A;  4UAF E;  2K13 X;  3ZWZ A;  2V7Z A;  2MBK A;  4H5W A;  4Z0D A;  2YIO A;  5AQT A;  1POI A;  2LL3 A;  1NGJ A;  2KL5 A;  3I33 A;  3FZK A;  5AQF A;  5BPL A;  3KHW A;  3ATU A;  3GDQ A;  5BN9 A;  1GMN A;  1NGG A;  3JXU A;  4R1C A;  1NGB A;  3HMT A;  2GMO A;  3FE1 A;  3FZM A;  3CW4 A;  5EOD A;  5AQR A;  2QWO A;  4Z09 A;  3KVG A;  5CP9 A;  4APL A;  5CT2 A;  2Z8W A;  3QI7 A;  1YUW A;  3C7N B;  5AQV A;  2E2F A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.