2YILA

Crystal structure of parasite sarcocystis muris lectin sml-2
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
131
structure length
131
Chain Sequence
QLDVSCFAHDKNIGSRTEQLSVVHVASAQDCMKECQALPTCSHFTYNKNSKKCHLKAGAPEFYTYTGDMTGPRSCEHNCSDACWMDGNNPLAVWDYSGQPPALCWAACMGTPGCDLYTFQGMTCKLYSQTS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Pan-Modular Structure of Microneme Protein Sml-2 from Parasite Sarcocystis Muris at 1.95 A Resolution and its Complex with 1-Thio-Beta-D-Galactose.
pubmed doi rcsb
molecule keywords MICRONEME ANTIGEN L2
molecule tags Sugar binding protein
total genus 36
structure length 131
sequence length 131
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2011-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00024 PAN_1 PAN domain
A PF14295 PAN_4 PAN domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.180 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 2yilA02
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 2yilA01
5EOKA 3MKPA 2Z8WA 2Q8BA 5I25A 2J8LA 3ZWZA 4R19A 2Y8RA 5CT1A 5CS1A 2QJ2A 5EODA 2Q8AA 2YIPA 3HMRA 4IUAA 5CS3A 5CT2A 4Z09A 4Z0DA 2HGFA 3SP8A 5CP9A 4DURA 4R1CA 1I8NA 5CSQA 1YXEA 2Z8VA 1GMOA 3ZLEA 1HKYA 3HMTA 5CS9A 4UAOA 2LL3A 1GMNA 4UV6A 5CT3A 4A5TS 3HN4A 1W81A 2J8JA 1NK1A 3SRJA 4Z0FA 4APMA 1Z40A 1W8KA 4Z0EA 2QJ4A 2X2ZA 2YILA 2F83A 1BHTA 4R1BA 3SRIA 1GP9A 4R1AA 4APLA 5CS5A 5COEA 3HMSA 2K13X 2LL4M 2YIOA
chains in the Genus database with same CATH superfamily
5KK4A 3FZKA 5AQFA 4KBOA 3QI7A 2YEOA 1NGFA 2E88A 1QQMA 4APMA 5CS3A 1ZFUA 1NGGA 2QWPA 5AQQA 3PSMA 2YC1C 1OZZA 2LR3A 1BHTA 1B7DA 3KP1A 5EXWA 5F2RA 2YIOA 5AQHA 2LJMA 2Q8BA 5AQVA 3JXUA 1C55A 3SP8A 5CP9A 1I2VA 3HN4A 1TI5A 3D2EB 2LI7A 1C56A 4H5NA 4HHFA 1ZYWA 3LDQA 1NGEA 4FL9A 1PX9A 5EOKA 3C7NA 1LQIA 3GKUA 5EODA 3HMRA 3LDLA 1NGAA 3A8YA 4UAOA 1B3CA 1W8KA 3AY9A 5AQXA 2MN5A 5FPMA 1NE5A 4APLA 5CS5A 3IUCA 1BA0A 3FZLA 5FPDA 1PTXA 3FE1A 2QJ2A 1KAZA 5AQOA 5CS9A 1BK8A 1W81A 2J8JA 1BA1A 1AYJA 3QFUA 2N69A 5AQJA 1VNBA 2BUPA 1GP9A 1NRBA 2E3FA 5AQZA 2E2FA 1JKZA 5AQNA 4UJ0A 3ZWZA 5FPEA 2KL5A 3LDOA 1MR4A 1YXEA 4HWIA 3KVGA 1WWNA 4Z0EA 5EY4A 2F83A 3FZFA 1JZAA 3LDNA 3MKPA 3KHWA 2B68A 1ZYVA 1XRSB 1GPSA 4A5TS 3SRJA 1NGHA 1HJOA 4H5RA 2YILA 1I6FA 5AQGA 4H5VA 2K13X 1AHOA 2MZ0A 1I2UA 2M8BB 2YIPA 3L6QA 3HMTA 4UV6A 2E0HA 2GMOA 2LN8A 1FH3A 1JZBA 2KGQA 1DKGD 3HSCA 5COEA 3HMSA 2N66A 1LQQA 3C7NB 1BCGA 4DURA 5AQUA 5AQMA 4R1CA 3D2EA 2KPYA 2LL3A 1DJTA 3D2FB 3ATVA 3SRIA 5AQYA 2Y8RA 1NGBA 1NGDA 4AEIA 4CQKA 5AR0A 2QW9A 2QWLA 1NRAA 3FZMA 2K35A 1SN4A 1ZU3A 3GL1A 1YUWA 2X2ZA 4UAEF 5AQPA 2E8AA 1T7EA 2B3CA 2QWMA 1NGJA 1KAXA 5CT1A 4H5TA 2Q8AA 2QWQA 4IUAA 2HGFA 1PE4A 1T0ZA 3E7RL 1GMNA 4HE7A 1HPMA 3L56A 3L4IA 2I61A 1HX1A 3BK3C 3KC6A 1S3XA 1SNBA 1ATRA 4UADE 5EVZA 2LY5A 2Z8WA 2ASCA 5CS1A 1HKYA 1NGCA 2G2KA 5AQLA 2JDQD 5CT3A 2QWNA 1Z40A 1BUPA 3LDPA 1CHZA 3CW4A 2V7ZA 2KYQA 1MYNA 2D56A 1SEGA 1ZVEA 5FPNA 2QXLA 2KHOA 4Z0DA 5CSQA 3M3ZA 3ZLEA 2NY8X 4FSVA 4AB0A 5F0XA 2YBRC 1ICAA 5EX5A 2LY6A 5BPLA 1LQHA 1ZVGA 4YIVA 3E7UX 1QQNA 4GNIA 1KAYA 1NH5A 5AQSA 2LJ7A 1OMYA 5AQTA 2KBKA 4UAFE 3SF4D 4IO8A 3R2VA 2GL1A 3KP0A 1CN2A 2SN3A 5CT2A 2N2RA 2A7TA 3QFPA 2KBJA 2MBKA 1NK1A 2N2QA 4Z0FA 1L4VA 1VNAA 5BN9A 1ZUTA 4R1AA 2ATBA 1P00A 5I25A 5AQWA 1T7AA 4R19A 1I6GA 3FZHA 4Z09A 1I8NA 5BPNA 1GMOA 5AQKA 2QWRA 3D2FA 4V1DC 2KJAA 3QMLA 2KBHA 2KSKA 1WMTA 1KV0A 5CY0A 1ATSA 1GPTA 2E3GA 2QWOA 3KOZA 4H5WA 1NPIA 3I33A 2NY9X 2BRZA 1BRZA 2LT8A 3KOYA 3ATUA 1NGIA 1UGLA 1N4NA 2VY6A 3CQXA 5AQIA 1WT7A 1T1TA 4R1BA 4KYPA 2LKBA 1POIA 5BPMA 1SN1A 1BMRA 1DQ7A 2LL4M 2J8LA 1QQOA 1P0AA 2Z8VA 3GDQA 5BN8A 1K8BA 5AQRA 4YIZA 4AAZA 3KOWA 2QJ4A 1T7BA 3KOXA 5F1XA 1JXCA
chains in the Genus database with same CATH topology
3FZKA 5AQFA 4KBOA 1NGBA 3R2VA 3QI7A 1NGDA 3ZWZA 5FPEA 2KL5A 3LDOA 1NGFA 2E88A 1QQMA 5AR0A 2QW9A 5CS3A 5CT2A 4APMA 1NGGA 1YXEA 4HWIA 2QWLA 2QWPA 5AQQA 3QFPA 3FZMA 2MBKA 1NK1A 4Z0FA 2K35A 3KVGA 5BN9A 4Z0EA 3GL1A 1YUWA 2X2ZA 4UAEF 5AQPA 5EY4A 2F83A 3FZFA 2E8AA 1BHTA 4R1AA 5F2RA 5EXWA 2QWMA 3LDNA 2YIOA 1NGJA 5AQHA 3MKPA 1KAXA 3KHWA 2Q8BA 5I25A 5AQWA 4R19A 5CT1A 3FZHA 5AQVA 4H5TA 2Q8AA 2QWQA 3JXUA 4IUAA 4Z09A 3SP8A 2HGFA 5CP9A 1I8NA 5BPNA 1GMOA 5AQKA 2QWRA 1GMNA 3D2FA 4A5TS 3HN4A 1HPMA 3L56A 3SRJA 3D2EB 1NGHA 3L4IA 1HJOA 1HX1A 3BK3C 4H5RA 3QMLA 3KC6A 4H5NA 2YILA 3LDQA 1NGEA 1S3XA 1ATSA 5AQGA 4H5VA 2QWOA 2K13X 4FL9A 5EVZA 1ATRA 4UADE 5EOKA 3C7NA 2Z8WA 4H5WA 3I33A 5CS1A 5EODA 3HMRA 2YIPA 3L6QA 3LDLA 3SF4D 1HKYA 1NGCA 5AQLA 3HMTA 1NGAA 3A8YA 4UAOA 4UV6A 2JDQD 5CT3A 3ATUA 2QWNA 2GMOA 2LN8A 1Z40A 1NGIA 1BUPA 1W8KA 3AY9A 2VY6A 3CQXA 3LDPA 5AQXA 3CW4A 2MN5A 5AQIA 2V7ZA 5FPMA 4R1BA 1DKGD 4APLA 1POIA 5BPMA 5CS5A 3HSCA 2D56A 5COEA 3HMSA 2LL4M 5FPNA 3IUCA 1BA0A 3FZLA 5FPDA 2QXLA 2J8LA 2KHOA 3FE1A 2QJ2A 3C7NB 4Z0DA 1QQOA 1KAZA 4DURA 5AQUA 5AQOA 5AQMA 4R1CA 5CSQA 3M3ZA 2Z8VA 4FSVA 3ZLEA 3D2EA 5F0XA 3GDQA 5BN8A 5CS9A 2LL3A 5EX5A 5BPLA 5AQRA 4YIZA 1W81A 2J8JA 1BA1A 3QFUA 5AQJA 3D2FB 4YIVA 2QJ4A 1QQNA 2BUPA 1KAYA 4GNIA 5F1XA 3ATVA 5AQSA 3SRIA 5AQTA 1GP9A 5AQZA 2E2FA 5AQYA 5AQNA 4UAFE 2Y8RA 4IO8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EOK A;  3MKP A;  2Z8W A;  2Q8B A;  5I25 A;  2J8L A;  3ZWZ A;  4R19 A;  2Y8R A;  5CT1 A;  5CS1 A;  2QJ2 A;  5EOD A;  2Q8A A;  2YIP A;  3HMR A;  4IUA A;  5CS3 A;  5CT2 A;  4Z09 A;  4Z0D A;  2HGF A;  3SP8 A;  5CP9 A;  4DUR A;  4R1C A;  1I8N A;  5CSQ A;  1YXE A;  2Z8V A;  1GMO A;  3ZLE A;  1HKY A;  3HMT A;  5CS9 A;  4UAO A;  2LL3 A;  1GMN A;  4UV6 A;  5CT3 A;  4A5T S;  3HN4 A;  1W81 A;  2J8J A;  1NK1 A;  3SRJ A;  4Z0F A;  4APM A;  1Z40 A;  1W8K A;  4Z0E A;  2QJ4 A;  2X2Z A;  2YIL A;  2F83 A;  1BHT A;  4R1B A;  3SRI A;  1GP9 A;  4R1A A;  4APL A;  5CS5 A;  5COE A;  3HMS A;  2K13 X;  2LL4 M;  2YIO A; 
#chains in the Genus database with same CATH topology
 5KK4 A;  3FZK A;  5AQF A;  4KBO A;  3QI7 A;  2YEO A;  1NGF A;  2E88 A;  1QQM A;  4APM A;  5CS3 A;  1ZFU A;  1NGG A;  2QWP A;  5AQQ A;  3PSM A;  2YC1 C;  1OZZ A;  2LR3 A;  1BHT A;  1B7D A;  3KP1 A;  5EXW A;  5F2R A;  2YIO A;  5AQH A;  2LJM A;  2Q8B A;  5AQV A;  3JXU A;  1C55 A;  3SP8 A;  5CP9 A;  1I2V A;  3HN4 A;  1TI5 A;  3D2E B;  2LI7 A;  1C56 A;  4H5N A;  4HHF A;  1ZYW A;  3LDQ A;  1NGE A;  4FL9 A;  1PX9 A;  5EOK A;  3C7N A;  1LQI A;  3GKU A;  5EOD A;  3HMR A;  3LDL A;  1NGA A;  3A8Y A;  4UAO A;  1B3C A;  1W8K A;  3AY9 A;  5AQX A;  2MN5 A;  5FPM A;  1NE5 A;  4APL A;  5CS5 A;  3IUC A;  1BA0 A;  3FZL A;  5FPD A;  1PTX A;  3FE1 A;  2QJ2 A;  1KAZ A;  5AQO A;  5CS9 A;  1BK8 A;  1W81 A;  2J8J A;  1BA1 A;  1AYJ A;  3QFU A;  2N69 A;  5AQJ A;  1VNB A;  2BUP A;  1GP9 A;  1NRB A;  2E3F A;  5AQZ A;  2E2F A;  1JKZ A;  5AQN A;  4UJ0 A;  3ZWZ A;  5FPE A;  2KL5 A;  3LDO A;  1MR4 A;  1YXE A;  4HWI A;  3KVG A;  1WWN A;  4Z0E A;  5EY4 A;  2F83 A;  3FZF A;  1JZA A;  3LDN A;  3MKP A;  3KHW A;  2B68 A;  1ZYV A;  1XRS B;  1GPS A;  4A5T S;  3SRJ A;  1NGH A;  1HJO A;  4H5R A;  2YIL A;  1I6F A;  5AQG A;  4H5V A;  2K13 X;  1AHO A;  2MZ0 A;  1I2U A;  2M8B B;  2YIP A;  3L6Q A;  3HMT A;  4UV6 A;  2E0H A;  2GMO A;  2LN8 A;  1FH3 A;  1JZB A;  2KGQ A;  1DKG D;  3HSC A;  5COE A;  3HMS A;  2N66 A;  1LQQ A;  3C7N B;  1BCG A;  4DUR A;  5AQU A;  5AQM A;  4R1C A;  3D2E A;  2KPY A;  2LL3 A;  1DJT A;  3D2F B;  3ATV A;  3SRI A;  5AQY A;  2Y8R A;  1NGB A;  1NGD A;  4AEI A;  4CQK A;  5AR0 A;  2QW9 A;  2QWL A;  1NRA A;  3FZM A;  2K35 A;  1SN4 A;  1ZU3 A;  3GL1 A;  1YUW A;  2X2Z A;  4UAE F;  5AQP A;  2E8A A;  1T7E A;  2B3C A;  2QWM A;  1NGJ A;  1KAX A;  5CT1 A;  4H5T A;  2Q8A A;  2QWQ A;  4IUA A;  2HGF A;  1PE4 A;  1T0Z A;  3E7R L;  1GMN A;  4HE7 A;  1HPM A;  3L56 A;  3L4I A;  2I61 A;  1HX1 A;  3BK3 C;  3KC6 A;  1S3X A;  1SNB A;  1ATR A;  4UAD E;  5EVZ A;  2LY5 A;  2Z8W A;  2ASC A;  5CS1 A;  1HKY A;  1NGC A;  2G2K A;  5AQL A;  2JDQ D;  5CT3 A;  2QWN A;  1Z40 A;  1BUP A;  3LDP A;  1CHZ A;  3CW4 A;  2V7Z A;  2KYQ A;  1MYN A;  2D56 A;  1SEG A;  1ZVE A;  5FPN A;  2QXL A;  2KHO A;  4Z0D A;  5CSQ A;  3M3Z A;  3ZLE A;  2NY8 X;  4FSV A;  4AB0 A;  5F0X A;  2YBR C;  1ICA A;  5EX5 A;  2LY6 A;  5BPL A;  1LQH A;  1ZVG A;  4YIV A;  3E7U X;  1QQN A;  4GNI A;  1KAY A;  1NH5 A;  5AQS A;  2LJ7 A;  1OMY A;  5AQT A;  2KBK A;  4UAF E;  3SF4 D;  4IO8 A;  3R2V A;  2GL1 A;  3KP0 A;  1CN2 A;  2SN3 A;  5CT2 A;  2N2R A;  2A7T A;  3QFP A;  2KBJ A;  2MBK A;  1NK1 A;  2N2Q A;  4Z0F A;  1L4V A;  1VNA A;  5BN9 A;  1ZUT A;  4R1A A;  2ATB A;  1P00 A;  5I25 A;  5AQW A;  1T7A A;  4R19 A;  1I6G A;  3FZH A;  4Z09 A;  1I8N A;  5BPN A;  1GMO A;  5AQK A;  2QWR A;  3D2F A;  4V1D C;  2KJA A;  3QML A;  2KBH A;  2KSK A;  1WMT A;  1KV0 A;  5CY0 A;  1ATS A;  1GPT A;  2E3G A;  2QWO A;  3KOZ A;  4H5W A;  1NPI A;  3I33 A;  2NY9 X;  2BRZ A;  1BRZ A;  2LT8 A;  3KOY A;  3ATU A;  1NGI A;  1UGL A;  1N4N A;  2VY6 A;  3CQX A;  5AQI A;  1WT7 A;  1T1T A;  4R1B A;  4KYP A;  2LKB A;  1POI A;  5BPM A;  1SN1 A;  1BMR A;  1DQ7 A;  2LL4 M;  2J8L A;  1QQO A;  1P0A A;  2Z8V A;  3GDQ A;  5BN8 A;  1K8B A;  5AQR A;  4YIZ A;  4AAZ A;  3KOW A;  2QJ4 A;  1T7B A;  3KOX A;  5F1X A;  1JXC A; 
#chains in the Genus database with same CATH homology
 3FZK A;  5AQF A;  4KBO A;  1NGB A;  3R2V A;  3QI7 A;  1NGD A;  3ZWZ A;  5FPE A;  2KL5 A;  3LDO A;  1NGF A;  2E88 A;  1QQM A;  5AR0 A;  2QW9 A;  5CS3 A;  5CT2 A;  4APM A;  1NGG A;  1YXE A;  4HWI A;  2QWL A;  2QWP A;  5AQQ A;  3QFP A;  3FZM A;  2MBK A;  1NK1 A;  4Z0F A;  2K35 A;  3KVG A;  5BN9 A;  4Z0E A;  3GL1 A;  1YUW A;  2X2Z A;  4UAE F;  5AQP A;  5EY4 A;  2F83 A;  3FZF A;  2E8A A;  1BHT A;  4R1A A;  5F2R A;  5EXW A;  2QWM A;  3LDN A;  2YIO A;  1NGJ A;  5AQH A;  3MKP A;  1KAX A;  3KHW A;  2Q8B A;  5I25 A;  5AQW A;  4R19 A;  5CT1 A;  3FZH A;  5AQV A;  4H5T A;  2Q8A A;  2QWQ A;  3JXU A;  4IUA A;  4Z09 A;  3SP8 A;  2HGF A;  5CP9 A;  1I8N A;  5BPN A;  1GMO A;  5AQK A;  2QWR A;  1GMN A;  3D2F A;  4A5T S;  3HN4 A;  1HPM A;  3L56 A;  3SRJ A;  3D2E B;  1NGH A;  3L4I A;  1HJO A;  1HX1 A;  3BK3 C;  4H5R A;  3QML A;  3KC6 A;  4H5N A;  2YIL A;  3LDQ A;  1NGE A;  1S3X A;  1ATS A;  5AQG A;  4H5V A;  2QWO A;  2K13 X;  4FL9 A;  5EVZ A;  1ATR A;  4UAD E;  5EOK A;  3C7N A;  2Z8W A;  4H5W A;  3I33 A;  5CS1 A;  5EOD A;  3HMR A;  2YIP A;  3L6Q A;  3LDL A;  3SF4 D;  1HKY A;  1NGC A;  5AQL A;  3HMT A;  1NGA A;  3A8Y A;  4UAO A;  4UV6 A;  2JDQ D;  5CT3 A;  3ATU A;  2QWN A;  2GMO A;  2LN8 A;  1Z40 A;  1NGI A;  1BUP A;  1W8K A;  3AY9 A;  2VY6 A;  3CQX A;  3LDP A;  5AQX A;  3CW4 A;  2MN5 A;  5AQI A;  2V7Z A;  5FPM A;  4R1B A;  1DKG D;  4APL A;  1POI A;  5BPM A;  5CS5 A;  3HSC A;  2D56 A;  5COE A;  3HMS A;  2LL4 M;  5FPN A;  3IUC A;  1BA0 A;  3FZL A;  5FPD A;  2QXL A;  2J8L A;  2KHO A;  3FE1 A;  2QJ2 A;  3C7N B;  4Z0D A;  1QQO A;  1KAZ A;  4DUR A;  5AQU A;  5AQO A;  5AQM A;  4R1C A;  5CSQ A;  3M3Z A;  2Z8V A;  4FSV A;  3ZLE A;  3D2E A;  5F0X A;  3GDQ A;  5BN8 A;  5CS9 A;  2LL3 A;  5EX5 A;  5BPL A;  5AQR A;  4YIZ A;  1W81 A;  2J8J A;  1BA1 A;  3QFU A;  5AQJ A;  3D2F B;  4YIV A;  2QJ4 A;  1QQN A;  2BUP A;  1KAY A;  4GNI A;  5F1X A;  3ATV A;  5AQS A;  3SRI A;  5AQT A;  1GP9 A;  5AQZ A;  2E2F A;  5AQY A;  5AQN A;  4UAF E;  2Y8R A;  4IO8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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