2YILA

Crystal structure of parasite sarcocystis muris lectin sml-2
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
131
structure length
131
Chain Sequence
QLDVSCFAHDKNIGSRTEQLSVVHVASAQDCMKECQALPTCSHFTYNKNSKKCHLKAGAPEFYTYTGDMTGPRSCEHNCSDACWMDGNNPLAVWDYSGQPPALCWAACMGTPGCDLYTFQGMTCKLYSQTS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Pan-Modular Structure of Microneme Protein Sml-2 from Parasite Sarcocystis Muris at 1.95 A Resolution and its Complex with 1-Thio-Beta-D-Galactose.
pubmed doi rcsb
molecule keywords MICRONEME ANTIGEN L2
molecule tags Sugar binding protein
total genus 36
structure length 131
sequence length 131
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2011-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00024 PAN_1 PAN domain
A PF14295 PAN_4 PAN domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.180 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 2yilA02
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 2yilA01
2LL3A 1W81A 5CSQA 3HMTA 5CT3A 1GMOA 4APLA 4Z0DA 1YXEA 3SP8A 5EOKA 5EODA 4UV6A 2Q8AA 5CS1A 2QJ2A 4R1CA 2Z8WA 3HMRA 4R19A 3ZLEA 4DURA 2Y8RA 4UAOA 2Q8BA 3SRJA 2F83A 4Z0EA 1BHTA 3HMSA 4R1BA 5CS9A 1W8KA 3MKPA 2Z8VA 2J8LA 1NK1A 2QJ4A 2X2ZA 5CT2A 5CT1A 1HKYA 2J8JA 3SRIA 4Z0FA 4R1AA 2HGFA 2LL4M 4APMA 5CS5A 4IUAA 5COEA 5I25A 2K13X 1GP9A 4Z09A 3HN4A 2YIPA 2YIOA 4A5TS 1Z40A 5CP9A 3ZWZA 5CS3A 1GMNA 1I8NA 2YILA
chains in the Genus database with same CATH superfamily
1JZBA 1ZYVA 2KBHA 1ICAA 1GPTA 2LR3A 2KHOA 1MYNA 1DJTA 4GNIA 3HN4A 4AB0A 1HJOA 1C55A 4HE7A 3FZKA 4APLA 1T7EA 1BRZA 2LY5A 5FPMA 3HMSA 2LT8A 1L4VA 2D56A 4Z0FA 4AEIA 2QWRA 2VY6A 2YIPA 1VNAA 3PSMA 2MZ0A 4H5WA 1HPMA 3LDLA 1B3CA 4DURA 1AHOA 1BMRA 2M8BB 5EXWA 2QWOA 4R1AA 1ATSA 2K13X 2LKBA 1Z40A 2QWMA 3IUCA 2KGQA 2QWLA 5F2RA 3QI7A 5EOKA 5EODA 2Z8WA 5BPLA 1PE4A 1WWNA 3GDQA 5AQSA 2YBRC 2QWNA 5KK4A 4Z09A 2LI7A 2E88A 5AR0A 4R1BA 1ZVEA 2NY8X 2K35A 1T1TA 4R19A 5AQTA 2Y8RA 4CQKA 5BPMA 4Z0EA 1I2VA 3D2FB 3D2FA 1NK1A 2QJ4A 1BUPA 2G2KA 3R2VA 3A8YA 5AQXA 2E2FA 1OMYA 5I25A 3SF4D 1NRAA 1QQNA 1ZYWA 1NGFA 4HHFA 1CN2A 1I8NA 2YILA 2N66A 1I2UA 1W81A 4FSVA 3SP8A 1ZVGA 3LDQA 2E0HA 3LDOA 1I6GA 5F1XA 1UGLA 5AQUA 1CHZA 2ASCA 1NRBA 1I6FA 1BA1A 1KAXA 5COEA 2E3FA 4H5VA 1DQ7A 1LQIA 3FE1A 2KPYA 5CSQA 5EY4A 2N69A 5AQPA 5BN8A 1NGCA 5FPDA 1NGJA 2E3GA 2SN3A 3KP0A 5CS5A 1BCGA 2B68A 1TI5A 5FPNA 3HMTA 5CT3A 2KBKA 3QFPA 1YXEA 2N2QA 1ZU3A 5EX5A 1C56A 5AQQA 1T7BA 1GPSA 1N4NA 1P00A 1POIA 2Z8VA 1S3XA 1YUWA 2GMOA 5AQKA 3CQXA 1BA0A 3E7UX 4IO8A 4KYPA 1GP9A 3ZWZA 3QFUA 3M3ZA 2KYQA 3C7NB 3FZHA 4Z0DA 3C7NA 4UV6A 1NPIA 4UADE 3HMRA 1KAZA 1OZZA 4UAOA 3SRJA 1BHTA 5CS9A 2B3CA 5BN9A 3KVGA 1K8BA 2J8JA 5AQGA 3KOXA 4YIVA 1PX9A 4FL9A 2KJAA 2N2RA 3KHWA 3LDPA 1ZUTA 1SEGA 1JZAA 5AQHA 4R1CA 1NGEA 4H5NA 2GL1A 3I33A 1NGIA 3FZLA 4AAZA 5FPEA 3SRIA 2HGFA 4APMA 2I61A 1P0AA 2LJ7A 2YEOA 1QQOA 5CP9A 5CS3A 1LQHA 3L56A 3HSCA 3KOYA 3GKUA 1KAYA 1ZFUA 3GL1A 5AQMA 2Q8BA 5AQOA 1NH5A 1T7AA 2KSKA 5CT2A 2LY6A 2NY9X 4UAEF 1SN4A 5CY0A 3LDNA 1DKGD 3AY9A 3L4IA 1MR4A 5CS1A 2F83A 4V1DC 3MKPA 3ATVA 2A7TA 5AQNA 3ATUA 1NGDA 2QW9A 1SNBA 3FZMA 5AQRA 2LN8A 1FH3A 4A5TS 1LQQA 3D2EB 3JXUA 1GMNA 3KC6A 2BUPA 2QXLA 3D2EA 2JDQD 2QWQA 4HWIA 5AQLA 2QJ2A 1WT7A 3ZLEA 3KOZA 2MBKA 1BK8A 5AQIA 1JKZA 5AQWA 3FZFA 1NGBA 2QWPA 1NGGA 5F0XA 3KP1A 2LL3A 1WMTA 3KOWA 3QMLA 2KBJA 4H5RA 2BRZA 1T0ZA 2J8LA 1QQMA 5CT1A 2LL4M 3CW4A 1NGHA 1NGAA 2MN5A 4H5TA 1ATRA 4UJ0A 3E7RL 1AYJA 2LJMA 5AQFA 1GMOA 1KV0A 5EVZA 2Q8AA 2YC1C 1HX1A 4YIZA 1HKYA 2X2ZA 1B7DA 5AQVA 1NE5A 4IUAA 3L6QA 2KL5A 2YIOA 4KBOA 2V7ZA 2E8AA 5AQJA 4UAFE 5BPNA 1XRSB 5AQYA 1JXCA 1PTXA 1W8KA 1SN1A 5AQZA 2ATBA 1VNBA 3BK3C
chains in the Genus database with same CATH topology
3C7NB 3FZHA 2JDQD 2K35A 2QWQA 4HWIA 3C7NA 5AQLA 4Z0DA 4UV6A 4UADE 2QJ2A 4R19A 5AQTA 3HMRA 3ZLEA 1KAZA 2Y8RA 4UAOA 3SRJA 5BPMA 4Z0EA 1BHTA 3D2FB 5CS9A 5BN9A 3D2FA 3KVGA 1NK1A 2QJ4A 2MBKA 1BUPA 2KHOA 5AQIA 2J8JA 3R2VA 3A8YA 4GNIA 5AQXA 5AQWA 2E2FA 5AQGA 5I25A 3SF4D 3FZFA 3HN4A 1NGBA 1QQNA 4YIVA 1HJOA 1NGFA 2QWPA 1NGGA 4FL9A 1I8NA 2YILA 5F0XA 3KHWA 2LL3A 3FZKA 1W81A 3LDPA 4APLA 4FSVA 3SP8A 3LDQA 5AQHA 3LDOA 3QMLA 4R1CA 1NGEA 4H5RA 4H5NA 3I33A 5F1XA 5FPMA 3HMSA 1NGIA 3FZLA 5AQUA 4Z0FA 2J8LA 1QQMA 5CT1A 5FPEA 2D56A 1BA1A 1KAXA 3SRIA 2HGFA 2LL4M 3CW4A 1NGHA 1NGAA 2MN5A 4H5TA 4APMA 2QWRA 5COEA 1ATRA 2VY6A 2YIPA 1QQOA 5CP9A 5CS3A 3L56A 3HSCA 4H5VA 3FE1A 5CSQA 1KAYA 5AQFA 1GMOA 4H5WA 1HPMA 3LDLA 3GL1A 5EVZA 5EY4A 2Q8AA 5AQMA 1HX1A 5AQPA 5BN8A 4YIZA 2Q8BA 4DURA 5AQOA 1NGCA 4R1BA 5FPDA 1NGJA 1HKYA 2X2ZA 5CT2A 1GMNA 5EXWA 2QWOA 5AQVA 4R1AA 4UAEF 5CS5A 4IUAA 1ATSA 2K13X 3L6QA 2KL5A 2YIOA 3LDNA 1Z40A 5FPNA 1DKGD 2QWMA 2V7ZA 3IUCA 2QWLA 4KBOA 3QI7A 5F2RA 3AY9A 3HMTA 5CT3A 2E8AA 3L4IA 3QFPA 1YXEA 5AQJA 5EX5A 5EOKA 5EODA 5CS1A 5AQQA 4UAFE 5BPNA 2Z8WA 5BPLA 5AQYA 2F83A 3GDQA 5AQSA 1POIA 1W8KA 3MKPA 2Z8VA 1S3XA 3ATVA 5AQNA 3KC6A 3ATUA 1YUWA 2GMOA 5AQKA 1NGDA 2QWNA 2QW9A 3CQXA 1BA0A 3FZMA 4IO8A 5AQRA 5AQZA 2LN8A 1GP9A 4Z09A 4A5TS 2E88A 3D2EB 3JXUA 5AR0A 3ZWZA 3QFUA 2BUPA 2QXLA 3M3ZA 3D2EA 3BK3C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LL3 A;  1W81 A;  5CSQ A;  3HMT A;  5CT3 A;  1GMO A;  4APL A;  4Z0D A;  1YXE A;  3SP8 A;  5EOK A;  5EOD A;  4UV6 A;  2Q8A A;  5CS1 A;  2QJ2 A;  4R1C A;  2Z8W A;  3HMR A;  4R19 A;  3ZLE A;  4DUR A;  2Y8R A;  4UAO A;  2Q8B A;  3SRJ A;  2F83 A;  4Z0E A;  1BHT A;  3HMS A;  4R1B A;  5CS9 A;  1W8K A;  3MKP A;  2Z8V A;  2J8L A;  1NK1 A;  2QJ4 A;  2X2Z A;  5CT2 A;  5CT1 A;  1HKY A;  2J8J A;  3SRI A;  4Z0F A;  4R1A A;  2HGF A;  2LL4 M;  4APM A;  5CS5 A;  4IUA A;  5COE A;  5I25 A;  2K13 X;  1GP9 A;  4Z09 A;  3HN4 A;  2YIP A;  2YIO A;  4A5T S;  1Z40 A;  5CP9 A;  3ZWZ A;  5CS3 A;  1GMN A;  1I8N A;  2YIL A; 
#chains in the Genus database with same CATH topology
 1JZB A;  1ZYV A;  2KBH A;  1ICA A;  1GPT A;  2LR3 A;  2KHO A;  1MYN A;  1DJT A;  4GNI A;  3HN4 A;  4AB0 A;  1HJO A;  1C55 A;  4HE7 A;  3FZK A;  4APL A;  1T7E A;  1BRZ A;  2LY5 A;  5FPM A;  3HMS A;  2LT8 A;  1L4V A;  2D56 A;  4Z0F A;  4AEI A;  2QWR A;  2VY6 A;  2YIP A;  1VNA A;  3PSM A;  2MZ0 A;  4H5W A;  1HPM A;  3LDL A;  1B3C A;  4DUR A;  1AHO A;  1BMR A;  2M8B B;  5EXW A;  2QWO A;  4R1A A;  1ATS A;  2K13 X;  2LKB A;  1Z40 A;  2QWM A;  3IUC A;  2KGQ A;  2QWL A;  5F2R A;  3QI7 A;  5EOK A;  5EOD A;  2Z8W A;  5BPL A;  1PE4 A;  1WWN A;  3GDQ A;  5AQS A;  2YBR C;  2QWN A;  5KK4 A;  4Z09 A;  2LI7 A;  2E88 A;  5AR0 A;  4R1B A;  1ZVE A;  2NY8 X;  2K35 A;  1T1T A;  4R19 A;  5AQT A;  2Y8R A;  4CQK A;  5BPM A;  4Z0E A;  1I2V A;  3D2F B;  3D2F A;  1NK1 A;  2QJ4 A;  1BUP A;  2G2K A;  3R2V A;  3A8Y A;  5AQX A;  2E2F A;  1OMY A;  5I25 A;  3SF4 D;  1NRA A;  1QQN A;  1ZYW A;  1NGF A;  4HHF A;  1CN2 A;  1I8N A;  2YIL A;  2N66 A;  1I2U A;  1W81 A;  4FSV A;  3SP8 A;  1ZVG A;  3LDQ A;  2E0H A;  3LDO A;  1I6G A;  5F1X A;  1UGL A;  5AQU A;  1CHZ A;  2ASC A;  1NRB A;  1I6F A;  1BA1 A;  1KAX A;  5COE A;  2E3F A;  4H5V A;  1DQ7 A;  1LQI A;  3FE1 A;  2KPY A;  5CSQ A;  5EY4 A;  2N69 A;  5AQP A;  5BN8 A;  1NGC A;  5FPD A;  1NGJ A;  2E3G A;  2SN3 A;  3KP0 A;  5CS5 A;  1BCG A;  2B68 A;  1TI5 A;  5FPN A;  3HMT A;  5CT3 A;  2KBK A;  3QFP A;  1YXE A;  2N2Q A;  1ZU3 A;  5EX5 A;  1C56 A;  5AQQ A;  1T7B A;  1GPS A;  1N4N A;  1P00 A;  1POI A;  2Z8V A;  1S3X A;  1YUW A;  2GMO A;  5AQK A;  3CQX A;  1BA0 A;  3E7U X;  4IO8 A;  4KYP A;  1GP9 A;  3ZWZ A;  3QFU A;  3M3Z A;  2KYQ A;  3C7N B;  3FZH A;  4Z0D A;  3C7N A;  4UV6 A;  1NPI A;  4UAD E;  3HMR A;  1KAZ A;  1OZZ A;  4UAO A;  3SRJ A;  1BHT A;  5CS9 A;  2B3C A;  5BN9 A;  3KVG A;  1K8B A;  2J8J A;  5AQG A;  3KOX A;  4YIV A;  1PX9 A;  4FL9 A;  2KJA A;  2N2R A;  3KHW A;  3LDP A;  1ZUT A;  1SEG A;  1JZA A;  5AQH A;  4R1C A;  1NGE A;  4H5N A;  2GL1 A;  3I33 A;  1NGI A;  3FZL A;  4AAZ A;  5FPE A;  3SRI A;  2HGF A;  4APM A;  2I61 A;  1P0A A;  2LJ7 A;  2YEO A;  1QQO A;  5CP9 A;  5CS3 A;  1LQH A;  3L56 A;  3HSC A;  3KOY A;  3GKU A;  1KAY A;  1ZFU A;  3GL1 A;  5AQM A;  2Q8B A;  5AQO A;  1NH5 A;  1T7A A;  2KSK A;  5CT2 A;  2LY6 A;  2NY9 X;  4UAE F;  1SN4 A;  5CY0 A;  3LDN A;  1DKG D;  3AY9 A;  3L4I A;  1MR4 A;  5CS1 A;  2F83 A;  4V1D C;  3MKP A;  3ATV A;  2A7T A;  5AQN A;  3ATU A;  1NGD A;  2QW9 A;  1SNB A;  3FZM A;  5AQR A;  2LN8 A;  1FH3 A;  4A5T S;  1LQQ A;  3D2E B;  3JXU A;  1GMN A;  3KC6 A;  2BUP A;  2QXL A;  3D2E A;  2JDQ D;  2QWQ A;  4HWI A;  5AQL A;  2QJ2 A;  1WT7 A;  3ZLE A;  3KOZ A;  2MBK A;  1BK8 A;  5AQI A;  1JKZ A;  5AQW A;  3FZF A;  1NGB A;  2QWP A;  1NGG A;  5F0X A;  3KP1 A;  2LL3 A;  1WMT A;  3KOW A;  3QML A;  2KBJ A;  4H5R A;  2BRZ A;  1T0Z A;  2J8L A;  1QQM A;  5CT1 A;  2LL4 M;  3CW4 A;  1NGH A;  1NGA A;  2MN5 A;  4H5T A;  1ATR A;  4UJ0 A;  3E7R L;  1AYJ A;  2LJM A;  5AQF A;  1GMO A;  1KV0 A;  5EVZ A;  2Q8A A;  2YC1 C;  1HX1 A;  4YIZ A;  1HKY A;  2X2Z A;  1B7D A;  5AQV A;  1NE5 A;  4IUA A;  3L6Q A;  2KL5 A;  2YIO A;  4KBO A;  2V7Z A;  2E8A A;  5AQJ A;  4UAF E;  5BPN A;  1XRS B;  5AQY A;  1JXC A;  1PTX A;  1W8K A;  1SN1 A;  5AQZ A;  2ATB A;  1VNB A;  3BK3 C; 
#chains in the Genus database with same CATH homology
 3C7N B;  3FZH A;  2JDQ D;  2K35 A;  2QWQ A;  4HWI A;  3C7N A;  5AQL A;  4Z0D A;  4UV6 A;  4UAD E;  2QJ2 A;  4R19 A;  5AQT A;  3HMR A;  3ZLE A;  1KAZ A;  2Y8R A;  4UAO A;  3SRJ A;  5BPM A;  4Z0E A;  1BHT A;  3D2F B;  5CS9 A;  5BN9 A;  3D2F A;  3KVG A;  1NK1 A;  2QJ4 A;  2MBK A;  1BUP A;  2KHO A;  5AQI A;  2J8J A;  3R2V A;  3A8Y A;  4GNI A;  5AQX A;  5AQW A;  2E2F A;  5AQG A;  5I25 A;  3SF4 D;  3FZF A;  3HN4 A;  1NGB A;  1QQN A;  4YIV A;  1HJO A;  1NGF A;  2QWP A;  1NGG A;  4FL9 A;  1I8N A;  2YIL A;  5F0X A;  3KHW A;  2LL3 A;  3FZK A;  1W81 A;  3LDP A;  4APL A;  4FSV A;  3SP8 A;  3LDQ A;  5AQH A;  3LDO A;  3QML A;  4R1C A;  1NGE A;  4H5R A;  4H5N A;  3I33 A;  5F1X A;  5FPM A;  3HMS A;  1NGI A;  3FZL A;  5AQU A;  4Z0F A;  2J8L A;  1QQM A;  5CT1 A;  5FPE A;  2D56 A;  1BA1 A;  1KAX A;  3SRI A;  2HGF A;  2LL4 M;  3CW4 A;  1NGH A;  1NGA A;  2MN5 A;  4H5T A;  4APM A;  2QWR A;  5COE A;  1ATR A;  2VY6 A;  2YIP A;  1QQO A;  5CP9 A;  5CS3 A;  3L56 A;  3HSC A;  4H5V A;  3FE1 A;  5CSQ A;  1KAY A;  5AQF A;  1GMO A;  4H5W A;  1HPM A;  3LDL A;  3GL1 A;  5EVZ A;  5EY4 A;  2Q8A A;  5AQM A;  1HX1 A;  5AQP A;  5BN8 A;  4YIZ A;  2Q8B A;  4DUR A;  5AQO A;  1NGC A;  4R1B A;  5FPD A;  1NGJ A;  1HKY A;  2X2Z A;  5CT2 A;  1GMN A;  5EXW A;  2QWO A;  5AQV A;  4R1A A;  4UAE F;  5CS5 A;  4IUA A;  1ATS A;  2K13 X;  3L6Q A;  2KL5 A;  2YIO A;  3LDN A;  1Z40 A;  5FPN A;  1DKG D;  2QWM A;  2V7Z A;  3IUC A;  2QWL A;  4KBO A;  3QI7 A;  5F2R A;  3AY9 A;  3HMT A;  5CT3 A;  2E8A A;  3L4I A;  3QFP A;  1YXE A;  5AQJ A;  5EX5 A;  5EOK A;  5EOD A;  5CS1 A;  5AQQ A;  4UAF E;  5BPN A;  2Z8W A;  5BPL A;  5AQY A;  2F83 A;  3GDQ A;  5AQS A;  1POI A;  1W8K A;  3MKP A;  2Z8V A;  1S3X A;  3ATV A;  5AQN A;  3KC6 A;  3ATU A;  1YUW A;  2GMO A;  5AQK A;  1NGD A;  2QWN A;  2QW9 A;  3CQX A;  1BA0 A;  3FZM A;  4IO8 A;  5AQR A;  5AQZ A;  2LN8 A;  1GP9 A;  4Z09 A;  4A5T S;  2E88 A;  3D2E B;  3JXU A;  5AR0 A;  3ZWZ A;  3QFU A;  2BUP A;  2QXL A;  3M3Z A;  3D2E A;  3BK3 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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