3AA0A

Crystal structure of actin capping protein in complex with the cp-binding motif derived from carmil
Total Genus 88

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
270
structure length
270
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (10-22)AH3 (43-61)TII1 (25-28)S7 (151-164)S9 (185-198)S4 (94-99)EMPTY3H2 (165-167)AH4 (117-135)S1 (64-66)TII2 (67-70)TIV3 (136-139)S2 (73-75)S6 (139-148)S8 (169-182)3H1 (78-80)TIV1 (89-92)S3 (86-89)TIV2 (99-102)TI'1 (83-86)TI2 (100-103)S5 (104-110)TIV4 (147-150)TVIa1 (182-185)S10 (204-217)AH5 (221-258)TII3 (199-202)TVIII1 (260-263)AH2 (29-40)TI1 (90-93)TI3 (263-266)Updating...
connected with : NaN
molecule tags Protein binding
source organism Gallus gallus
publication title Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
pubmed doi rcsb
molecule keywords F-actin-capping protein subunit alpha-1
total genus 88
structure length 270
sequence length 270
ec nomenclature
pdb deposition date 2009-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aa0A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aa0A02
4AKRA 3AA7A 3AA1B 2KXPB 3AA6A 3LK2B 3AAAB 3AAEA 3AAEB 3LK3B 4AKRB 3AA7B 5AFUL 2KZ7A 3AA6B 3LK42 5ADXL 3AA0A 1IZNA 3AA1A 5AFUK 2KZ7B 2KXPA 3LK2A 3LK41 3AAAA 3AA0B 5ADXK 1IZNB 3LK3A
chains in the Genus database with same CATH superfamily
3AA7A 2Y0LA 4FESA 1HXXA 4C4VB 5G26A 2LFUA 4CTDA 4FQEA 3VE2A 2M07A 2PRRA 2KZ7B 2FGRA 2XE3A 1Q9GA 3VE1A 1IZNB 2XE5A 1ME5A 2W80C 3PQUA 3AA1B 4PJ0O 4XNKA 2Y2XA 2W81C 4K3CA 3VZTX 2F1VA 2LHFA 2WJRA 4RL9A 4JFBA 2AF7A 3VY8X 4LSIA 5G39A 3EMNX 2X9KA 4UB8O 4FMSA 1ZHXA 2XE2A 4FRTA 3O0EA 2YPVA 3DA4A 3A0HO 2N2MA 1MM4A 3SYSA 4N58A 5D5DA 1BXWA 3AA6B 4RJXA 3SY7A 3NJTA 4LSFA 5DL5A 3AA0A 4AYNA 2IWVA 5IYUA 4GCSA 1Q9FA 2R88A 2JN8A 1YS5A 4PR7A 2R4NA 4D65A 3POUA 2PRNA 3G7GA 4QQ1A 1PRNA 1GFMA 3WI5A 2WJQA 4AYDC 3D7IA 2AXTO 2XG6A 2J1NA 5DL6A 3T24A 4AYID 1HXTA 4G75A 8PRNA 4PUXA 4O4XA 3BRZA 4FT6A 2KZ7A 3PGRA 2ERVA 2R89A 1BT9A 4C00A 2PFXA 5G3AA 2XE1A 5T5FA 3LK3A 3POQA 1THQA 3VZWX 3A2SX 5KAFO 3T20A 4FSOA 4GCQA 4AZLA 3JCUO 3RBHA 2K0LA 4F4BA 4RJWA 4G9QA 3A0BO 3HWBA 4FRXA 4E1SA 3VY9X 2YNKA 3QRAA 3AAEB 3C1LA 3WU2O 5H2FO 4AYMC 4KR4A 1QJPA 1GFQA 1ZHYA 1GFOA 5G38A 2KXPA 4O3ZA 4GHBA 3AAAA 3PF1A 5DL8A 4AKRA 4FSPA 4JCHA 2WVPA 2OMFA 4AFKA 3DWNA 1MM5A 3AA7B 5AFUL 2JQYA 4KRAA 5DIPA 3UPGA 5ADXL 3POXA 3T0SA 5DIKA 2ODJA 2CWQA 5AFUK 1GU9A 4XNLA 3LK2A 5PRNA 3WI4A 4O3XB 2Y7SA 2KDYA 2R8AA 4N59A 5ADXK 1OPFA 2K4TA 5FVNA 3HW9A 4GCPA 2XMXA 1KNCA 4N74A 3BS0A 3PGUA 1QJ8A 1ZHZA 2XTRA 2QEUA 4D64A 6PRNA 4C4VA 5GTHO 2OUWA 1BH3A 4GF4A 5E79O 2X27X 2ZFGA 2ZLDA 3BEYA 4AKMA 4O4UA 4FZLA 4O3WA 4KR8A 5GTIO 1IZNA 4IL6O 3AA1A 1MPFA 3UU2A 5JDPA 3V8UA 4RLBA 4UB6O 1OSMA 4B61A 3PGSA 3C5OA 3AA0B 2FGQX 2MHLA 2IJCA 2M06A 4Z3TA 2ES9A 1E54A 5EE2A 3UAQA 5GV0A 7PRNA 2GMYA 3TZGA 3KZIO 1T16A 4FZMA 3AA6A 3PORA 4O3YA 2J4UP 4FOZA 4D5UA 4AYEC 1PHOA 2JMMA 2Y0HA 4K3BA 4BUMX 2IWWA 1P4TA 2Y0KA 1G90A 3LK3B 4FZNA 2Q0TA 3DA3A 5B5EO 3LVYA 3K19A 2F1TA 1QJ9A 3HOLA 2N2LA 2O4VA 4E1TA 4C69X 1LW1A 2O4DA 3PQSA 1H6S1 2GE4A 2XTQA 3SZDA 2F1CX 3VZUX 3SY9A 2R4PA 4AUIA 3FYXA 2OYOA 5KAIO 4RLCA 3GP6A 1HXUA 4LSHA 3SYBA 4FUVA 3PRNA 5TISO 2KXPB 1ZHWA 1S5LO 3SZVA 3AAAB 3HOEA 4AKRB 2R4LA 4G76A 2QTKA 1ORMA 4O49A 3DWOX 3LK41 3NSGA 2MNHA 1T1LA 2KC0A 3AAEA 2R4OA 3LK2B 3DZMA 3KVDD 2PORA 5DL7A 1GFNA 4U9CA 1P8CA 4N75A 1GFPA 3LK42 4LSEA 3QRCA 1VKEA 3JTYA 3BRYA 1ZHTA 5B66O
chains in the Genus database with same CATH topology
4G75A 3AA7A 1P4TA 8PRNA 4PUXA 1OPFA 2Y0LA 4O4XA 2K4TA 4FESA 1HXXA 2Y0KA 1G90A 5G26A 2LFUA 3LK3B 4FZNA 2Q0TA 3DA3A 5FVNA 4FT6A 3HW9A 2KZ7A 4GCPA 2XMXA 1KNCA 3LVYA 2ERVA 3K19A 3VE2A 2F1TA 1QJ9A 2M07A 3HOLA 1BT9A 2PFXA 1QJ8A 2PRRA 2KZ7B 2N2LA 1ZHTA 2O4VA 1ZHZA 2XE1A 2FGRA 2XTRA 4E1TA 2QEUA 2XE3A 4D64A 4C69X 1Q9GA 6PRNA 5T5FA 3VE1A 1IZNB 3LK3A 2XE5A 1ME5A 2W80C 3POQA 3AA1B 3PQUA 4XNKA 1LW1A 2O4DA 1THQA 2W81C 2Y2XA 3PQSA 3VZWX 2OUWA 3A2SX 1BH3A 4GF4A 3VZTX 4FSOA 4GCQA 3T20A 2F1VA 4AZLA 2LHFA 2X27X 2ZFGA 1H6S1 2ZLDA 4RL9A 3BEYA 2GE4A 4JFBA 3RBHA 4AKMA 2AF7A 2XTQA 4O4UA 3SZDA 4FZLA 2K0LA 4O3WA 3VY8X 4KR8A 3VZUX 4F4BA 4LSIA 3SY9A 4RJWA 1IZNA 4AUIA 3FYXA 4G9QA 2OYOA 3AA1A 1MPFA 3UU2A 5JDPA 3V8UA 4RLCA 4RLBA 3EMNX 1OSMA 3HWBA 4FRXA 3GP6A 4E1SA 1HXUA 4B61A 4LSHA 3C5OA 3AA0B 2FGQX 2MHLA 4FMSA 1ZHXA 2XE2A 4FRTA 3PRNA 4FUVA 3SYBA 3VY9X 2KXPB 3O0EA 1ZHWA 2YNKA 2YPVA 3DA4A 2IJCA 3SZVA 2N2MA 3QRAA 1MM4A 3AAAB 3HOEA 2M06A 3AAEB 3SYSA 4Z3TA 4N58A 4AKRB 2ES9A 5D5DA 1BXWA 3AA6B 3C1LA 4RJXA 4G76A 3SY7A 2QTKA 4AYMC 1E54A 4LSFA 1ORMA 4KR4A 5EE2A 3UAQA 5GV0A 5DL5A 1QJPA 3AA0A 1GFQA 4O49A 4AYNA 1ZHYA 1GFOA 5IYUA 4GCSA 2KXPA 1Q9FA 4O3ZA 3LK41 7PRNA 3NSGA 2JN8A 2MNHA 4GHBA 2GMYA 1YS5A 3TZGA 3AAAA 2KC0A 3AAEA 5DL8A 4AKRA 4FSPA 4D65A 4JCHA 4FZMA 4N59A 3AA6A 3LK2B 3POUA 2OMFA 4AFKA 3PORA 2PRNA 1MM5A 4O3YA 3KVDD 2PORA 3AA7B 5DL7A 5AFUL 2J4UP 4KRAA 1GFNA 4FOZA 5DIPA 3G7GA 4QQ1A 4U9CA 1PRNA 1P8CA 4D5UA 3UPGA 1GFPA 1GFMA 3WI5A 3LK42 4AYEC 3POXA 5ADXL 3T0SA 1PHOA 4AYDC 4LSEA 3D7IA 5DIKA 2JMMA 2ODJA 3QRCA 2CWQA 1VKEA 5AFUK 1GU9A 2XG6A 3LK2A 3JTYA 4XNLA 5PRNA 3WI4A 2J1NA 4O3XB 2Y0HA 5DL6A 2Y7SA 3T24A 2KDYA 4AYID 4BUMX 5ADXK 1HXTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AKR A;  3AA7 A;  3AA1 B;  2KXP B;  3AA6 A;  3LK2 B;  3AAA B;  3AAE A;  3AAE B;  3LK3 B;  4AKR B;  3AA7 B;  5AFU L;  2KZ7 A;  3AA6 B;  3LK4 2;  5ADX L;  3AA0 A;  1IZN A;  3AA1 A;  5AFU K;  2KZ7 B;  2KXP A;  3LK2 A;  3LK4 1;  3AAA A;  3AA0 B;  5ADX K;  1IZN B;  3LK3 A; 
#chains in the Genus database with same CATH topology
 3AA7 A;  2Y0L A;  4FES A;  1HXX A;  4C4V B;  5G26 A;  2LFU A;  4CTD A;  4FQE A;  3VE2 A;  2M07 A;  2PRR A;  2KZ7 B;  2FGR A;  2XE3 A;  1Q9G A;  3VE1 A;  1IZN B;  2XE5 A;  1ME5 A;  2W80 C;  3PQU A;  3AA1 B;  4PJ0 O;  4XNK A;  2Y2X A;  2W81 C;  4K3C A;  3VZT X;  2F1V A;  2LHF A;  2WJR A;  4RL9 A;  4JFB A;  2AF7 A;  3VY8 X;  4LSI A;  5G39 A;  3EMN X;  2X9K A;  4UB8 O;  4FMS A;  1ZHX A;  2XE2 A;  4FRT A;  3O0E A;  2YPV A;  3DA4 A;  3A0H O;  2N2M A;  1MM4 A;  3SYS A;  4N58 A;  5D5D A;  1BXW A;  3AA6 B;  4RJX A;  3SY7 A;  3NJT A;  4LSF A;  5DL5 A;  3AA0 A;  4AYN A;  2IWV A;  5IYU A;  4GCS A;  1Q9F A;  2R88 A;  2JN8 A;  1YS5 A;  4PR7 A;  2R4N A;  4D65 A;  3POU A;  2PRN A;  3G7G A;  4QQ1 A;  1PRN A;  1GFM A;  3WI5 A;  2WJQ A;  4AYD C;  3D7I A;  2AXT O;  2XG6 A;  2J1N A;  5DL6 A;  3T24 A;  4AYI D;  1HXT A;  4G75 A;  8PRN A;  4PUX A;  4O4X A;  3BRZ A;  4FT6 A;  2KZ7 A;  3PGR A;  2ERV A;  2R89 A;  1BT9 A;  4C00 A;  2PFX A;  5G3A A;  2XE1 A;  5T5F A;  3LK3 A;  3POQ A;  1THQ A;  3VZW X;  3A2S X;  5KAF O;  3T20 A;  4FSO A;  4GCQ A;  4AZL A;  3JCU O;  3RBH A;  2K0L A;  4F4B A;  4RJW A;  4G9Q A;  3A0B O;  3HWB A;  4FRX A;  4E1S A;  3VY9 X;  2YNK A;  3QRA A;  3AAE B;  3C1L A;  3WU2 O;  5H2F O;  4AYM C;  4KR4 A;  1QJP A;  1GFQ A;  1ZHY A;  1GFO A;  5G38 A;  2KXP A;  4O3Z A;  4GHB A;  3AAA A;  3PF1 A;  5DL8 A;  4AKR A;  4FSP A;  4JCH A;  2WVP A;  2OMF A;  4AFK A;  3DWN A;  1MM5 A;  3AA7 B;  5AFU L;  2JQY A;  4KRA A;  5DIP A;  3UPG A;  5ADX L;  3POX A;  3T0S A;  5DIK A;  2ODJ A;  2CWQ A;  5AFU K;  1GU9 A;  4XNL A;  3LK2 A;  5PRN A;  3WI4 A;  4O3X B;  2Y7S A;  2KDY A;  2R8A A;  4N59 A;  5ADX K;  1OPF A;  2K4T A;  5FVN A;  3HW9 A;  4GCP A;  2XMX A;  1KNC A;  4N74 A;  3BS0 A;  3PGU A;  1QJ8 A;  1ZHZ A;  2XTR A;  2QEU A;  4D64 A;  6PRN A;  4C4V A;  5GTH O;  2OUW A;  1BH3 A;  4GF4 A;  5E79 O;  2X27 X;  2ZFG A;  2ZLD A;  3BEY A;  4AKM A;  4O4U A;  4FZL A;  4O3W A;  4KR8 A;  5GTI O;  1IZN A;  4IL6 O;  3AA1 A;  1MPF A;  3UU2 A;  5JDP A;  3V8U A;  4RLB A;  4UB6 O;  1OSM A;  4B61 A;  3PGS A;  3C5O A;  3AA0 B;  2FGQ X;  2MHL A;  2IJC A;  2M06 A;  4Z3T A;  2ES9 A;  1E54 A;  5EE2 A;  3UAQ A;  5GV0 A;  7PRN A;  2GMY A;  3TZG A;  3KZI O;  1T16 A;  4FZM A;  3AA6 A;  3POR A;  4O3Y A;  2J4U P;  4FOZ A;  4D5U A;  4AYE C;  1PHO A;  2JMM A;  2Y0H A;  4K3B A;  4BUM X;  2IWW A;  1P4T A;  2Y0K A;  1G90 A;  3LK3 B;  4FZN A;  2Q0T A;  3DA3 A;  5B5E O;  3LVY A;  3K19 A;  2F1T A;  1QJ9 A;  3HOL A;  2N2L A;  2O4V A;  4E1T A;  4C69 X;  1LW1 A;  2O4D A;  3PQS A;  1H6S 1;  2GE4 A;  2XTQ A;  3SZD A;  2F1C X;  3VZU X;  3SY9 A;  2R4P A;  4AUI A;  3FYX A;  2OYO A;  5KAI O;  4RLC A;  3GP6 A;  1HXU A;  4LSH A;  3SYB A;  4FUV A;  3PRN A;  5TIS O;  2KXP B;  1ZHW A;  1S5L O;  3SZV A;  3AAA B;  3HOE A;  4AKR B;  2R4L A;  4G76 A;  2QTK A;  1ORM A;  4O49 A;  3DWO X;  3LK4 1;  3NSG A;  2MNH A;  1T1L A;  2KC0 A;  3AAE A;  2R4O A;  3LK2 B;  3DZM A;  3KVD D;  2POR A;  5DL7 A;  1GFN A;  4U9C A;  1P8C A;  4N75 A;  1GFP A;  3LK4 2;  4LSE A;  3QRC A;  1VKE A;  3JTY A;  3BRY A;  1ZHT A;  5B66 O; 
#chains in the Genus database with same CATH homology
 4G75 A;  3AA7 A;  1P4T A;  8PRN A;  4PUX A;  1OPF A;  2Y0L A;  4O4X A;  2K4T A;  4FES A;  1HXX A;  2Y0K A;  1G90 A;  5G26 A;  2LFU A;  3LK3 B;  4FZN A;  2Q0T A;  3DA3 A;  5FVN A;  4FT6 A;  3HW9 A;  2KZ7 A;  4GCP A;  2XMX A;  1KNC A;  3LVY A;  2ERV A;  3K19 A;  3VE2 A;  2F1T A;  1QJ9 A;  2M07 A;  3HOL A;  1BT9 A;  2PFX A;  1QJ8 A;  2PRR A;  2KZ7 B;  2N2L A;  1ZHT A;  2O4V A;  1ZHZ A;  2XE1 A;  2FGR A;  2XTR A;  4E1T A;  2QEU A;  2XE3 A;  4D64 A;  4C69 X;  1Q9G A;  6PRN A;  5T5F A;  3VE1 A;  1IZN B;  3LK3 A;  2XE5 A;  1ME5 A;  2W80 C;  3POQ A;  3AA1 B;  3PQU A;  4XNK A;  1LW1 A;  2O4D A;  1THQ A;  2W81 C;  2Y2X A;  3PQS A;  3VZW X;  2OUW A;  3A2S X;  1BH3 A;  4GF4 A;  3VZT X;  4FSO A;  4GCQ A;  3T20 A;  2F1V A;  4AZL A;  2LHF A;  2X27 X;  2ZFG A;  1H6S 1;  2ZLD A;  4RL9 A;  3BEY A;  2GE4 A;  4JFB A;  3RBH A;  4AKM A;  2AF7 A;  2XTQ A;  4O4U A;  3SZD A;  4FZL A;  2K0L A;  4O3W A;  3VY8 X;  4KR8 A;  3VZU X;  4F4B A;  4LSI A;  3SY9 A;  4RJW A;  1IZN A;  4AUI A;  3FYX A;  4G9Q A;  2OYO A;  3AA1 A;  1MPF A;  3UU2 A;  5JDP A;  3V8U A;  4RLC A;  4RLB A;  3EMN X;  1OSM A;  3HWB A;  4FRX A;  3GP6 A;  4E1S A;  1HXU A;  4B61 A;  4LSH A;  3C5O A;  3AA0 B;  2FGQ X;  2MHL A;  4FMS A;  1ZHX A;  2XE2 A;  4FRT A;  3PRN A;  4FUV A;  3SYB A;  3VY9 X;  2KXP B;  3O0E A;  1ZHW A;  2YNK A;  2YPV A;  3DA4 A;  2IJC A;  3SZV A;  2N2M A;  3QRA A;  1MM4 A;  3AAA B;  3HOE A;  2M06 A;  3AAE B;  3SYS A;  4Z3T A;  4N58 A;  4AKR B;  2ES9 A;  5D5D A;  1BXW A;  3AA6 B;  3C1L A;  4RJX A;  4G76 A;  3SY7 A;  2QTK A;  4AYM C;  1E54 A;  4LSF A;  1ORM A;  4KR4 A;  5EE2 A;  3UAQ A;  5GV0 A;  5DL5 A;  1QJP A;  3AA0 A;  1GFQ A;  4O49 A;  4AYN A;  1ZHY A;  1GFO A;  5IYU A;  4GCS A;  2KXP A;  1Q9F A;  4O3Z A;  3LK4 1;  7PRN A;  3NSG A;  2JN8 A;  2MNH A;  4GHB A;  2GMY A;  1YS5 A;  3TZG A;  3AAA A;  2KC0 A;  3AAE A;  5DL8 A;  4AKR A;  4FSP A;  4D65 A;  4JCH A;  4FZM A;  4N59 A;  3AA6 A;  3LK2 B;  3POU A;  2OMF A;  4AFK A;  3POR A;  2PRN A;  1MM5 A;  4O3Y A;  3KVD D;  2POR A;  3AA7 B;  5DL7 A;  5AFU L;  2J4U P;  4KRA A;  1GFN A;  4FOZ A;  5DIP A;  3G7G A;  4QQ1 A;  4U9C A;  1PRN A;  1P8C A;  4D5U A;  3UPG A;  1GFP A;  1GFM A;  3WI5 A;  3LK4 2;  4AYE C;  3POX A;  5ADX L;  3T0S A;  1PHO A;  4AYD C;  4LSE A;  3D7I A;  5DIK A;  2JMM A;  2ODJ A;  3QRC A;  2CWQ A;  1VKE A;  5AFU K;  1GU9 A;  2XG6 A;  3LK2 A;  3JTY A;  4XNL A;  5PRN A;  3WI4 A;  2J1N A;  4O3X B;  2Y0H A;  5DL6 A;  2Y7S A;  3T24 A;  2KDY A;  4AYI D;  4BUM X;  5ADX K;  1HXT A; 
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