3AA1 | Genus

Total Genus 83

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	83
sequence length	271
structure length	271
Chain Sequence	RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSY

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein binding
source organism	Gallus gallus
publication title	Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition pubmed doi rcsb
molecule keywords	F-actin-capping protein subunit alpha-1
total genus	83
structure length	271
sequence length	271
ec nomenclature
pdb deposition date	2009-11-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01267	F-actin_cap_A	F-actin capping protein alpha subunit

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1290.20	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	3aa1A01
2.40.160.80	Mainly Beta	Beta Barrel	Porin	Porin	3aa1A02

2KZ7B 3LK42 1IZNA 3AAAA 3AA7A 5AFUL 3AA0B 2KZ7A 3LK3B 3AA6B 3AA0A 5ADXK 3LK3A 3AA6A 2KXPB 3LK2B 3AAEB 4AKRB 3AA1B 5ADXL 3LK2A 3LK41 4AKRA 5AFUK 2KXPA 1IZNB 3AAEA 3AAAB 3AA7B 3AA1A
chains in the Genus database with same CATH superfamily

4FZNA 3RBHA 4FZLA 1OSMA 3A0BO 4KRAA 4RJXA 4GHBA 3K19A 4BUMX 3UPGA 4RLCA 3BRYA 2R88A 1ZHWA 2F1TA 2MHLA 2XG6A 2O4VA 2JN8A 3VY9X 3WU2O 2WVPA 3C5OA 1BH3A 2OMFA 1QJ9A 1QJPA 4AUIA 2XE1A 4G75A 1ORMA 4D5UA 5FVNA 2IWWA 3DA4A 5DL7A 3C1LA 3O0EA 3A0HO 2R8AA 4D65A 3LK41 2W80C 4C4VB 4LSFA 2XE3A 4AYMC 3WI4A 5H2FO 2M07A 4GF4A 2GMYA 1YS5A 3JTYA 3VZWX 1G90A 4QQ1A 3EMNX 5GTHO 1ZHYA 3HWBA 1IZNA 2N2MA 3NSGA 2ZFGA 5GTIO 3D7IA 1Q9GA 3WI5A 4N58A 2Y0KA 3AAEB 4D64A 4KR4A 3GP6A 5DL6A 5AFUK 4AYDC 1HXTA 6PRNA 3PQUA 5IYUA 5G3AA 2YNKA 4O3XB 4C4VA 1MPFA 4O3YA 1ZHXA 4O3ZA 4FRXA 2AXTO 2PRRA 4AYID 1GFNA 3T0SA 3KVDD 3NJTA 3T24A 3QRAA 1MM4A 2ERVA 4FQEA 1P4TA 4FZMA 4XNLA 1KNCA 2O4DA 3VE1A 1S5LO 1GFQA 4LSIA 2IWVA 3JCUO 2Q0TA 2J4UP 2F1CX 3FYXA 3SY9A 4GCQA 5PRNA 3SYSA 4FSOA 3POQA 4AKRA 4FRTA 1IZNB 3AAEA 2R4OA 4JFBA 1VKEA 4FOZA 4LSEA 3SZVA 2IJCA 2ES9A 1Q9FA 1P8CA 4IL6O 3VZUX 2K4TA 5TISO 3AA0A 3AA6A 4LSHA 5G26A 4O49A 2QTKA 2Y2XA 3PRNA 2FGQX 5DIKA 5T5FA 4AZLA 1MM5A 2XE5A 5B5EO 1OPFA 5DL8A 4RLBA 5G39A 2KZ7A 3PGUA 3POXA 1ME5A 5JDPA 2N2LA 4PJ0O 2WJRA 4U9CA 3V8UA 5D5DA 2KXPB 4RJWA 2CWQA 5E79O 4CTDA 4GCPA 3T20A 4PUXA 1HXUA 3HOLA 1T1LA 3LK42 4N75A 5AFUL 1QJ8A 2F1VA 2JQYA 3LK3A 2R4LA 4N74A 4AKRB 2LHFA 3LVYA 3HW9A 3BEYA 3BS0A 5EE2A 3VZTX 2LFUA 4E1SA 7PRNA 2K0LA 3AA0B 2J1NA 3AA6B 2QEUA 4XNKA 3G7GA 8PRNA 3AA1B 4GCSA 4AFKA 2KXPA 2KDYA 4O4UA 4O3WA 4F4BA 1E54A 2KZ7B 4K3BA 4C00A 3KZIO 2WJQA 2PORA 3UU2A 2ZLDA 2ODJA 2PFXA 3POUA 4KR8A 2PRNA 3DWNA 1LW1A 3AAAA 3AA7A 3PORA 1PHOA 3LK3B 4FUVA 5DL5A 1ZHTA 2M06A 4FSPA 4O4XA 3LK2A 5B66O 3AA1A 1PRNA 4C69X 2X9KA 1GFOA 2KC0A 3DWOX 4UB6O 3A2SX 1BXWA 5KAIO 3SY7A 1GFMA 4PR7A 3DA3A 4FESA 4AKMA 4G9QA 2AF7A 4RL9A 3DZMA 2R4PA 4AYEC 5GV0A 2Y0HA 4E1TA 1GU9A 5DIPA 4FT6A 3SYBA 3HOEA 4G76A 4B61A 2FGRA 4K3CA 4JCHA 1ZHZA 4UB8O 5G38A 2OYOA 3AAAB 3AA7B 3PF1A 2YPVA 4FMSA 3VY8X 3PGSA 3UAQA 2MNHA 2Y7SA 2Y0LA 4Z3TA 3SZDA 2OUWA 1H6S1 3LK2B 2R4NA 5ADXL 2XE2A 2R89A 2W81C 1HXXA 3TZGA 3QRCA 4AYNA 1BT9A 1T16A 3PQSA 1GFPA 1THQA 2JMMA 2XTRA 3PGRA 2X27X 5ADXK 4N59A 2GE4A 3VE2A 2XMXA 2XTQA 3BRZA 5KAFO
chains in the Genus database with same CATH topology

3PQUA 5IYUA 4FZNA 3RBHA 4C69X 2YNKA 3LK42 4FZLA 1OSMA 4KRAA 4RJXA 5AFUL 4O3XB 4GHBA 1GFOA 1QJ8A 3K19A 1MPFA 2KC0A 4BUMX 4O3YA 1ZHXA 3UPGA 4RLCA 2F1VA 3A2SX 4FRXA 4O3ZA 1BXWA 3HOLA 3LK3A 2PRRA 1ZHWA 3SY7A 4AYID 1GFNA 1GFMA 2F1TA 3T0SA 4AKRB 2LHFA 2MHLA 2XG6A 3KVDD 2O4VA 2JN8A 3VY9X 3LVYA 3T24A 3DA3A 3HW9A 4FESA 3BEYA 3QRAA 1MM4A 3C5OA 4AKMA 4G9QA 2ERVA 2AF7A 4RL9A 1BH3A 5EE2A 3VZTX 2OMFA 1QJ9A 4AYEC 1P4TA 2LFUA 1QJPA 4AUIA 2XE1A 4FZMA 4XNLA 4G75A 4E1SA 1KNCA 7PRNA 5GV0A 2Y0HA 1ORMA 2K0LA 2O4DA 4D5UA 4E1TA 1GU9A 5DIPA 2J1NA 3AA0B 5FVNA 3VE1A 4FT6A 3SYBA 1GFQA 3AA6B 4LSIA 3DA4A 3HOEA 2QEUA 4XNKA 3G7GA 4G76A 2Q0TA 4B61A 2FGRA 2J4UP 5DL7A 8PRNA 3FYXA 3SY9A 4GCQA 4JCHA 5PRNA 3C1LA 1ZHZA 3O0EA 3AA1B 4GCSA 3SYSA 4FSOA 4AFKA 3POQA 3LK41 4D65A 4AKRA 4FRTA 2KXPA 1IZNB 2OYOA 3AAEA 2KDYA 3AA7B 3AAAB 2W80C 4JFBA 4O4UA 4O3WA 4F4BA 1E54A 1VKEA 4FOZA 4LSFA 4LSEA 2XE3A 2KZ7B 3SZVA 2IJCA 2YPVA 4FMSA 3VY8X 3UAQA 4AYMC 2ES9A 3WI4A 2M07A 1Q9FA 4GF4A 2GMYA 1P8CA 1YS5A 2MNHA 3VZUX 2K4TA 2Y7SA 3JTYA 3AA0A 2Y0LA 3AA6A 3VZWX 4Z3TA 2PORA 1G90A 4LSHA 3SZDA 2OUWA 1H6S1 3LK2B 5G26A 5ADXL 2XE2A 4O49A 2QTKA 3UU2A 2Y2XA 2ODJA 2ZLDA 3PRNA 2PFXA 2FGQX 5DIKA 4QQ1A 2W81C 3EMNX 3POUA 4KR8A 5T5FA 4AZLA 1MM5A 2XE5A 2PRNA 1HXXA 1ZHYA 3HWBA 3TZGA 1LW1A 1OPFA 5DL8A 1IZNA 3QRCA 3AAAA 3AA7A 3PORA 2N2MA 3NSGA 4AYNA 1BT9A 3PQSA 4RLBA 1GFPA 1PHOA 2ZFGA 2KZ7A 3LK3B 3POXA 1THQA 2JMMA 2XTRA 4FUVA 1ME5A 3D7IA 2X27X 5JDPA 2N2LA 5ADXK 1Q9GA 5DL5A 1ZHTA 4U9CA 3WI5A 3V8UA 4N58A 2Y0KA 5D5DA 2M06A 2KXPB 3AAEB 4FSPA 4RJWA 4D64A 4N59A 2GE4A 4O4XA 2CWQA 4KR4A 3GP6A 5DL6A 3VE2A 3LK2A 4GCPA 3T20A 4PUXA 5AFUK 4AYDC 2XMXA 2XTQA 1HXUA 1HXTA 3AA1A 1PRNA 6PRNA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2KZ7 B;  3LK4 2;  1IZN A;  3AAA A;  3AA7 A;  5AFU L;  3AA0 B;  2KZ7 A;  3LK3 B;  3AA6 B;  3AA0 A;  5ADX K;  3LK3 A;  3AA6 A;  2KXP B;  3LK2 B;  3AAE B;  4AKR B;  3AA1 B;  5ADX L;  3LK2 A;  3LK4 1;  4AKR A;  5AFU K;  2KXP A;  1IZN B;  3AAE A;  3AAA B;  3AA7 B;  3AA1 A; 
#chains in the Genus database with same CATH topology
 4FZN A;  3RBH A;  4FZL A;  1OSM A;  3A0B O;  4KRA A;  4RJX A;  4GHB A;  3K19 A;  4BUM X;  3UPG A;  4RLC A;  3BRY A;  2R88 A;  1ZHW A;  2F1T A;  2MHL A;  2XG6 A;  2O4V A;  2JN8 A;  3VY9 X;  3WU2 O;  2WVP A;  3C5O A;  1BH3 A;  2OMF A;  1QJ9 A;  1QJP A;  4AUI A;  2XE1 A;  4G75 A;  1ORM A;  4D5U A;  5FVN A;  2IWW A;  3DA4 A;  5DL7 A;  3C1L A;  3O0E A;  3A0H O;  2R8A A;  4D65 A;  3LK4 1;  2W80 C;  4C4V B;  4LSF A;  2XE3 A;  4AYM C;  3WI4 A;  5H2F O;  2M07 A;  4GF4 A;  2GMY A;  1YS5 A;  3JTY A;  3VZW X;  1G90 A;  4QQ1 A;  3EMN X;  5GTH O;  1ZHY A;  3HWB A;  1IZN A;  2N2M A;  3NSG A;  2ZFG A;  5GTI O;  3D7I A;  1Q9G A;  3WI5 A;  4N58 A;  2Y0K A;  3AAE B;  4D64 A;  4KR4 A;  3GP6 A;  5DL6 A;  5AFU K;  4AYD C;  1HXT A;  6PRN A;  3PQU A;  5IYU A;  5G3A A;  2YNK A;  4O3X B;  4C4V A;  1MPF A;  4O3Y A;  1ZHX A;  4O3Z A;  4FRX A;  2AXT O;  2PRR A;  4AYI D;  1GFN A;  3T0S A;  3KVD D;  3NJT A;  3T24 A;  3QRA A;  1MM4 A;  2ERV A;  4FQE A;  1P4T A;  4FZM A;  4XNL A;  1KNC A;  2O4D A;  3VE1 A;  1S5L O;  1GFQ A;  4LSI A;  2IWV A;  3JCU O;  2Q0T A;  2J4U P;  2F1C X;  3FYX A;  3SY9 A;  4GCQ A;  5PRN A;  3SYS A;  4FSO A;  3POQ A;  4AKR A;  4FRT A;  1IZN B;  3AAE A;  2R4O A;  4JFB A;  1VKE A;  4FOZ A;  4LSE A;  3SZV A;  2IJC A;  2ES9 A;  1Q9F A;  1P8C A;  4IL6 O;  3VZU X;  2K4T A;  5TIS O;  3AA0 A;  3AA6 A;  4LSH A;  5G26 A;  4O49 A;  2QTK A;  2Y2X A;  3PRN A;  2FGQ X;  5DIK A;  5T5F A;  4AZL A;  1MM5 A;  2XE5 A;  5B5E O;  1OPF A;  5DL8 A;  4RLB A;  5G39 A;  2KZ7 A;  3PGU A;  3POX A;  1ME5 A;  5JDP A;  2N2L A;  4PJ0 O;  2WJR A;  4U9C A;  3V8U A;  5D5D A;  2KXP B;  4RJW A;  2CWQ A;  5E79 O;  4CTD A;  4GCP A;  3T20 A;  4PUX A;  1HXU A;  3HOL A;  1T1L A;  3LK4 2;  4N75 A;  5AFU L;  1QJ8 A;  2F1V A;  2JQY A;  3LK3 A;  2R4L A;  4N74 A;  4AKR B;  2LHF A;  3LVY A;  3HW9 A;  3BEY A;  3BS0 A;  5EE2 A;  3VZT X;  2LFU A;  4E1S A;  7PRN A;  2K0L A;  3AA0 B;  2J1N A;  3AA6 B;  2QEU A;  4XNK A;  3G7G A;  8PRN A;  3AA1 B;  4GCS A;  4AFK A;  2KXP A;  2KDY A;  4O4U A;  4O3W A;  4F4B A;  1E54 A;  2KZ7 B;  4K3B A;  4C00 A;  3KZI O;  2WJQ A;  2POR A;  3UU2 A;  2ZLD A;  2ODJ A;  2PFX A;  3POU A;  4KR8 A;  2PRN A;  3DWN A;  1LW1 A;  3AAA A;  3AA7 A;  3POR A;  1PHO A;  3LK3 B;  4FUV A;  5DL5 A;  1ZHT A;  2M06 A;  4FSP A;  4O4X A;  3LK2 A;  5B66 O;  3AA1 A;  1PRN A;  4C69 X;  2X9K A;  1GFO A;  2KC0 A;  3DWO X;  4UB6 O;  3A2S X;  1BXW A;  5KAI O;  3SY7 A;  1GFM A;  4PR7 A;  3DA3 A;  4FES A;  4AKM A;  4G9Q A;  2AF7 A;  4RL9 A;  3DZM A;  2R4P A;  4AYE C;  5GV0 A;  2Y0H A;  4E1T A;  1GU9 A;  5DIP A;  4FT6 A;  3SYB A;  3HOE A;  4G76 A;  4B61 A;  2FGR A;  4K3C A;  4JCH A;  1ZHZ A;  4UB8 O;  5G38 A;  2OYO A;  3AAA B;  3AA7 B;  3PF1 A;  2YPV A;  4FMS A;  3VY8 X;  3PGS A;  3UAQ A;  2MNH A;  2Y7S A;  2Y0L A;  4Z3T A;  3SZD A;  2OUW A;  1H6S 1;  3LK2 B;  2R4N A;  5ADX L;  2XE2 A;  2R89 A;  2W81 C;  1HXX A;  3TZG A;  3QRC A;  4AYN A;  1BT9 A;  1T16 A;  3PQS A;  1GFP A;  1THQ A;  2JMM A;  2XTR A;  3PGR A;  2X27 X;  5ADX K;  4N59 A;  2GE4 A;  3VE2 A;  2XMX A;  2XTQ A;  3BRZ A;  5KAF O; 
#chains in the Genus database with same CATH homology
 3PQU A;  5IYU A;  4FZN A;  3RBH A;  4C69 X;  2YNK A;  3LK4 2;  4FZL A;  1OSM A;  4KRA A;  4RJX A;  5AFU L;  4O3X B;  4GHB A;  1GFO A;  1QJ8 A;  3K19 A;  1MPF A;  2KC0 A;  4BUM X;  4O3Y A;  1ZHX A;  3UPG A;  4RLC A;  2F1V A;  3A2S X;  4FRX A;  4O3Z A;  1BXW A;  3HOL A;  3LK3 A;  2PRR A;  1ZHW A;  3SY7 A;  4AYI D;  1GFN A;  1GFM A;  2F1T A;  3T0S A;  4AKR B;  2LHF A;  2MHL A;  2XG6 A;  3KVD D;  2O4V A;  2JN8 A;  3VY9 X;  3LVY A;  3T24 A;  3DA3 A;  3HW9 A;  4FES A;  3BEY A;  3QRA A;  1MM4 A;  3C5O A;  4AKM A;  4G9Q A;  2ERV A;  2AF7 A;  4RL9 A;  1BH3 A;  5EE2 A;  3VZT X;  2OMF A;  1QJ9 A;  4AYE C;  1P4T A;  2LFU A;  1QJP A;  4AUI A;  2XE1 A;  4FZM A;  4XNL A;  4G75 A;  4E1S A;  1KNC A;  7PRN A;  5GV0 A;  2Y0H A;  1ORM A;  2K0L A;  2O4D A;  4D5U A;  4E1T A;  1GU9 A;  5DIP A;  2J1N A;  3AA0 B;  5FVN A;  3VE1 A;  4FT6 A;  3SYB A;  1GFQ A;  3AA6 B;  4LSI A;  3DA4 A;  3HOE A;  2QEU A;  4XNK A;  3G7G A;  4G76 A;  2Q0T A;  4B61 A;  2FGR A;  2J4U P;  5DL7 A;  8PRN A;  3FYX A;  3SY9 A;  4GCQ A;  4JCH A;  5PRN A;  3C1L A;  1ZHZ A;  3O0E A;  3AA1 B;  4GCS A;  3SYS A;  4FSO A;  4AFK A;  3POQ A;  3LK4 1;  4D65 A;  4AKR A;  4FRT A;  2KXP A;  1IZN B;  2OYO A;  3AAE A;  2KDY A;  3AA7 B;  3AAA B;  2W80 C;  4JFB A;  4O4U A;  4O3W A;  4F4B A;  1E54 A;  1VKE A;  4FOZ A;  4LSF A;  4LSE A;  2XE3 A;  2KZ7 B;  3SZV A;  2IJC A;  2YPV A;  4FMS A;  3VY8 X;  3UAQ A;  4AYM C;  2ES9 A;  3WI4 A;  2M07 A;  1Q9F A;  4GF4 A;  2GMY A;  1P8C A;  1YS5 A;  2MNH A;  3VZU X;  2K4T A;  2Y7S A;  3JTY A;  3AA0 A;  2Y0L A;  3AA6 A;  3VZW X;  4Z3T A;  2POR A;  1G90 A;  4LSH A;  3SZD A;  2OUW A;  1H6S 1;  3LK2 B;  5G26 A;  5ADX L;  2XE2 A;  4O49 A;  2QTK A;  3UU2 A;  2Y2X A;  2ODJ A;  2ZLD A;  3PRN A;  2PFX A;  2FGQ X;  5DIK A;  4QQ1 A;  2W81 C;  3EMN X;  3POU A;  4KR8 A;  5T5F A;  4AZL A;  1MM5 A;  2XE5 A;  2PRN A;  1HXX A;  1ZHY A;  3HWB A;  3TZG A;  1LW1 A;  1OPF A;  5DL8 A;  1IZN A;  3QRC A;  3AAA A;  3AA7 A;  3POR A;  2N2M A;  3NSG A;  4AYN A;  1BT9 A;  3PQS A;  4RLB A;  1GFP A;  1PHO A;  2ZFG A;  2KZ7 A;  3LK3 B;  3POX A;  1THQ A;  2JMM A;  2XTR A;  4FUV A;  1ME5 A;  3D7I A;  2X27 X;  5JDP A;  2N2L A;  5ADX K;  1Q9G A;  5DL5 A;  1ZHT A;  4U9C A;  3WI5 A;  3V8U A;  4N58 A;  2Y0K A;  5D5D A;  2M06 A;  2KXP B;  3AAE B;  4FSP A;  4RJW A;  4D64 A;  4N59 A;  2GE4 A;  4O4X A;  2CWQ A;  4KR4 A;  3GP6 A;  5DL6 A;  3VE2 A;  3LK2 A;  4GCP A;  3T20 A;  4PUX A;  5AFU K;  4AYD C;  2XMX A;  2XTQ A;  1HXU A;  1HXT A;  3AA1 A;  1PRN A;  6PRN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3AA1A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations