3AAA | Genus

Total Genus 75

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	75
sequence length	267
structure length	267
Chain Sequence	SDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKIL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein binding
source organism	Gallus gallus
publication title	Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition pubmed doi rcsb
molecule keywords	F-actin-capping protein subunit alpha-1
total genus	75
structure length	267
sequence length	267
ec nomenclature
pdb deposition date	2009-11-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01267	F-actin_cap_A	F-actin capping protein alpha subunit

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1290.20	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	3aaaA01
2.40.160.80	Mainly Beta	Beta Barrel	Porin	Porin	3aaaA02

5AFUK 3LK42 5AFUL 3AAEB 3AAEA 3AA1B 3AA1A 5ADXK 3AA7B 3AA7A 1IZNB 1IZNA 2KXPB 4AKRB 2KXPA 4AKRA 3AA0B 3LK3B 5ADXL 3AA0A 3LK3A 3LK2A 2KZ7B 3AA6B 3LK2B 2KZ7A 3AA6A 3LK41 3AAAA 3AAAB
chains in the Genus database with same CATH superfamily

5GTIO 2AXTO 2K0LA 3WI5A 3AA1A 2XE3A 5G3AA 5IYUA 3DZMA 2IWVA 2K4TA 2R4OA 3SYBA 3JTYA 2N2MA 1ME5A 3PGSA 1Q9GA 3AAAB 2ZLDA 2O4DA 5DL7A 5GV0A 2X9KA 3PQUA 2XG6A 4LSEA 3DWOX 3VY9X 2ZFGA 1H6S1 3HW9A 3PRNA 2PORA 2X27X 2YNKA 2CWQA 3TZGA 4GCQA 3LVYA 4C4VA 4E1TA 2KXPB 3SYSA 4U9CA 3AA6B 5G26A 2XE2A 5DIKA 1G90A 2Y0LA 3D7IA 1GFNA 3SZVA 2IJCA 3T24A 3A0HO 2ES9A 4LSIA 4UB6O 3VE2A 2R4NA 4FSPA 4KR8A 3WI4A 3AA7A 2JMMA 2JQYA 2JN8A 4D65A 2PFXA 4O3XB 1ZHXA 3T20A 3PGUA 2J1NA 1HXTA 2R4PA 3AAAA 4D5UA 3POUA 4LSHA 1QJ8A 4N59A 5T5FA 1MM5A 1PRNA 5D5DA 2FGQX 3V8UA 3C5OA 2YPVA 3DWNA 3UAQA 1ZHTA 4G76A 4FZLA 1ZHYA 5G38A 3VZUX 1VKEA 2XMXA 2Q0TA 4O4UA 3AAEB 1BXWA 3HOEA 2XTRA 4G9QA 1MM4A 3KZIO 2QTKA 2W80C 4FZNA 3PQSA 1YS5A 2KDYA 4F4BA 2GMYA 4KR4A 3QRAA 5PRNA 5TISO 5AFUL 4CTDA 4GCSA 5H2FO 3VY8X 2XE5A 5KAIO 3BS0A 4QQ1A 2R89A 4GHBA 1GFPA 2M06A 4N74A 3GP6A 3LK42 4AYDC 1QJPA 5B5EO 3VZWX 4FRXA 3VE1A 1T1LA 7PRNA 1IZNB 3AA0B 4AKRA 3EMNX 3VZTX 2M07A 4FRTA 2WVPA 4G75A 4GCPA 5G39A 3HOLA 4RJXA 5DIPA 4AYMC 1QJ9A 3PGRA 2F1CX 4FOZA 3SY9A 3NSGA 3LK3B 2KZ7B 3LK41 3SZDA 4O4XA 3WU2O 2ERVA 3BRYA 3PF1A 4JFBA 1KNCA 1ZHWA 2ODJA 4AYEC 4N75A 3HWBA 2KXPA 5ADXL 2F1VA 3LK2B 5E79O 3AA6A 2F1TA 3DA4A 3O0EA 4D64A 2WJRA 1GFMA 5FVNA 1T16A 2MHLA 2KC0A 1E54A 3G7GA 2WJQA 3AA1B 2OYOA 4GF4A 4O3WA 1ZHZA 3KVDD 2R88A 1THQA 4BUMX 3JCUO 4FQEA 4KRAA 2J4UP 6PRNA 4AYNA 5JDPA 1HXUA 4AUIA 4C00A 4FESA 5KAFO 4C4VB 3UU2A 4Z3TA 2OMFA 3LK2A 2PRNA 2PRRA 3A0BO 2Y0HA 1OSMA 4AKMA 2R4LA 3PORA 2AF7A 1P8CA 2GE4A 1MPFA 1GFOA 2OUWA 5B66O 3AAEA 3QRCA 2W81C 4FMSA 3AA7B 2LHFA 4E1SA 4FZMA 4FSOA 1ORMA 2IWWA 5AFUK 4FUVA 4AFKA 2N2LA 3T0SA 2Y2XA 1P4TA 4O3ZA 3RBHA 2FGRA 4N58A 1LW1A 3FYXA 4PUXA 4PR7A 4JCHA 3DA3A 3SY7A 3BRZA 3POXA 4FT6A 1OPFA 4O3YA 8PRNA 2XTQA 1PHOA 5DL6A 1GU9A 1IZNA 4RLBA 3AA0A 4AYID 4LSFA 4XNLA 2Y7SA 5DL5A 2QEUA 1GFQA 3A2SX 4RL9A 4C69X 3BEYA 5GTHO 4K3BA 3NJTA 3POQA 2LFUA 1S5LO 2MNHA 4RJWA 2O4VA 1HXXA 3LK3A 3UPGA 2KZ7A 2Y0KA 4UB8O 1Q9FA 4IL6O 4XNKA 4K3CA 3K19A 1BT9A 5ADXK 4B61A 5EE2A 2R8AA 5DL8A 3C1LA 4AKRB 1BH3A 4O49A 4PJ0O 4RLCA 4AZLA 2XE1A
chains in the Genus database with same CATH topology

4FZLA 5AFUK 1ZHYA 2ERVA 4FUVA 4AFKA 3VZUX 2K0LA 1VKEA 4JFBA 2XMXA 2Q0TA 4O4UA 3AAEB 1BXWA 1KNCA 2N2LA 3HOEA 3WI5A 3AA1A 3T0SA 1ZHWA 2XE3A 2Y2XA 1P4TA 4O3ZA 3RBHA 2FGRA 2ODJA 4AYEC 2XTRA 4G9QA 1MM4A 2QTKA 2W80C 4FZNA 5IYUA 3PQSA 1YS5A 3HWBA 2KXPA 5ADXL 4N58A 1LW1A 2KDYA 2F1VA 3LK2B 2K4TA 4F4BA 3AA6A 2GMYA 3FYXA 4KR4A 2F1TA 3JTYA 2N2MA 1ME5A 3DA4A 3O0EA 4PUXA 3SYBA 1Q9GA 4JCHA 3AAAB 3DA3A 3QRAA 5PRNA 3SY7A 4D64A 1GFMA 2O4DA 2ZLDA 5DL7A 5FVNA 5GV0A 3PQUA 2XG6A 3POXA 1OPFA 4FT6A 2MHLA 4LSEA 4O3YA 2KC0A 1E54A 2ZFGA 3G7GA 3VY9X 1H6S1 5AFUL 8PRNA 3AA1B 2OYOA 4GCSA 3HW9A 2XTQA 3PRNA 3VY8X 2PORA 1PHOA 2X27X 4GF4A 5DL6A 2YNKA 2CWQA 3TZGA 2XE5A 1GU9A 4GCQA 3LVYA 4E1TA 1IZNA 4O3WA 1ZHZA 2KXPB 3KVDD 4QQ1A 3SYSA 4RLBA 4U9CA 3AA0A 4AYID 3AA6B 5G26A 4GHBA 1GFPA 4LSFA 4XNLA 2Y7SA 1THQA 2M06A 5DL5A 2XE2A 5DIKA 1G90A 2QEUA 4BUMX 1GFQA 2Y0LA 3D7IA 1GFNA 3GP6A 3A2SX 4KRAA 4RL9A 3SZVA 4AYNA 6PRNA 2IJCA 3LK42 3T24A 2J4UP 4C69X 3BEYA 4AYDC 1QJPA 5JDPA 2ES9A 3POQA 3VZWX 2LFUA 4LSIA 3VE2A 1HXUA 4FRXA 4AUIA 3VE1A 4FESA 2MNHA 4FSPA 4RJWA 7PRNA 4KR8A 3WI4A 3AA7A 1IZNB 2O4VA 3UU2A 2JMMA 1HXXA 4Z3TA 3AA0B 4AKRA 2OMFA 2JN8A 3LK3A 3LK2A 2PRNA 4D65A 2PRRA 3UPGA 2KZ7A 2PFXA 1OSMA 2Y0KA 2M07A 2Y0HA 3EMNX 4O3XB 1Q9FA 1ZHXA 3VZTX 4FRTA 2J1NA 4AKMA 3T20A 1HXTA 3PORA 3AAAA 2AF7A 4G75A 4D5UA 1P8CA 4GCPA 2GE4A 4XNKA 1MPFA 1GFOA 3POUA 2OUWA 3HOLA 4LSHA 1QJ8A 4RJXA 3AAEA 3QRCA 2W81C 5DIPA 4AYMC 1QJ9A 3K19A 4N59A 4FMSA 1BT9A 5ADXK 5T5FA 5EE2A 4B61A 3AA7B 1MM5A 1PRNA 2LHFA 4FOZA 5DL8A 3SY9A 3C1LA 5D5DA 4AKRB 3NSGA 3LK3B 2FGQX 3V8UA 4E1SA 1BH3A 2KZ7B 4O49A 3C5OA 2YPVA 3LK41 4FZMA 4RLCA 3SZDA 3UAQA 4AZLA 4O4XA 4FSOA 2XE1A 1ZHTA 4G76A 1ORMA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5AFU K;  3LK4 2;  5AFU L;  3AAE B;  3AAE A;  3AA1 B;  3AA1 A;  5ADX K;  3AA7 B;  3AA7 A;  1IZN B;  1IZN A;  2KXP B;  4AKR B;  2KXP A;  4AKR A;  3AA0 B;  3LK3 B;  5ADX L;  3AA0 A;  3LK3 A;  3LK2 A;  2KZ7 B;  3AA6 B;  3LK2 B;  2KZ7 A;  3AA6 A;  3LK4 1;  3AAA A;  3AAA B; 
#chains in the Genus database with same CATH topology
 5GTI O;  2AXT O;  2K0L A;  3WI5 A;  3AA1 A;  2XE3 A;  5G3A A;  5IYU A;  3DZM A;  2IWV A;  2K4T A;  2R4O A;  3SYB A;  3JTY A;  2N2M A;  1ME5 A;  3PGS A;  1Q9G A;  3AAA B;  2ZLD A;  2O4D A;  5DL7 A;  5GV0 A;  2X9K A;  3PQU A;  2XG6 A;  4LSE A;  3DWO X;  3VY9 X;  2ZFG A;  1H6S 1;  3HW9 A;  3PRN A;  2POR A;  2X27 X;  2YNK A;  2CWQ A;  3TZG A;  4GCQ A;  3LVY A;  4C4V A;  4E1T A;  2KXP B;  3SYS A;  4U9C A;  3AA6 B;  5G26 A;  2XE2 A;  5DIK A;  1G90 A;  2Y0L A;  3D7I A;  1GFN A;  3SZV A;  2IJC A;  3T24 A;  3A0H O;  2ES9 A;  4LSI A;  4UB6 O;  3VE2 A;  2R4N A;  4FSP A;  4KR8 A;  3WI4 A;  3AA7 A;  2JMM A;  2JQY A;  2JN8 A;  4D65 A;  2PFX A;  4O3X B;  1ZHX A;  3T20 A;  3PGU A;  2J1N A;  1HXT A;  2R4P A;  3AAA A;  4D5U A;  3POU A;  4LSH A;  1QJ8 A;  4N59 A;  5T5F A;  1MM5 A;  1PRN A;  5D5D A;  2FGQ X;  3V8U A;  3C5O A;  2YPV A;  3DWN A;  3UAQ A;  1ZHT A;  4G76 A;  4FZL A;  1ZHY A;  5G38 A;  3VZU X;  1VKE A;  2XMX A;  2Q0T A;  4O4U A;  3AAE B;  1BXW A;  3HOE A;  2XTR A;  4G9Q A;  1MM4 A;  3KZI O;  2QTK A;  2W80 C;  4FZN A;  3PQS A;  1YS5 A;  2KDY A;  4F4B A;  2GMY A;  4KR4 A;  3QRA A;  5PRN A;  5TIS O;  5AFU L;  4CTD A;  4GCS A;  5H2F O;  3VY8 X;  2XE5 A;  5KAI O;  3BS0 A;  4QQ1 A;  2R89 A;  4GHB A;  1GFP A;  2M06 A;  4N74 A;  3GP6 A;  3LK4 2;  4AYD C;  1QJP A;  5B5E O;  3VZW X;  4FRX A;  3VE1 A;  1T1L A;  7PRN A;  1IZN B;  3AA0 B;  4AKR A;  3EMN X;  3VZT X;  2M07 A;  4FRT A;  2WVP A;  4G75 A;  4GCP A;  5G39 A;  3HOL A;  4RJX A;  5DIP A;  4AYM C;  1QJ9 A;  3PGR A;  2F1C X;  4FOZ A;  3SY9 A;  3NSG A;  3LK3 B;  2KZ7 B;  3LK4 1;  3SZD A;  4O4X A;  3WU2 O;  2ERV A;  3BRY A;  3PF1 A;  4JFB A;  1KNC A;  1ZHW A;  2ODJ A;  4AYE C;  4N75 A;  3HWB A;  2KXP A;  5ADX L;  2F1V A;  3LK2 B;  5E79 O;  3AA6 A;  2F1T A;  3DA4 A;  3O0E A;  4D64 A;  2WJR A;  1GFM A;  5FVN A;  1T16 A;  2MHL A;  2KC0 A;  1E54 A;  3G7G A;  2WJQ A;  3AA1 B;  2OYO A;  4GF4 A;  4O3W A;  1ZHZ A;  3KVD D;  2R88 A;  1THQ A;  4BUM X;  3JCU O;  4FQE A;  4KRA A;  2J4U P;  6PRN A;  4AYN A;  5JDP A;  1HXU A;  4AUI A;  4C00 A;  4FES A;  5KAF O;  4C4V B;  3UU2 A;  4Z3T A;  2OMF A;  3LK2 A;  2PRN A;  2PRR A;  3A0B O;  2Y0H A;  1OSM A;  4AKM A;  2R4L A;  3POR A;  2AF7 A;  1P8C A;  2GE4 A;  1MPF A;  1GFO A;  2OUW A;  5B66 O;  3AAE A;  3QRC A;  2W81 C;  4FMS A;  3AA7 B;  2LHF A;  4E1S A;  4FZM A;  4FSO A;  1ORM A;  2IWW A;  5AFU K;  4FUV A;  4AFK A;  2N2L A;  3T0S A;  2Y2X A;  1P4T A;  4O3Z A;  3RBH A;  2FGR A;  4N58 A;  1LW1 A;  3FYX A;  4PUX A;  4PR7 A;  4JCH A;  3DA3 A;  3SY7 A;  3BRZ A;  3POX A;  4FT6 A;  1OPF A;  4O3Y A;  8PRN A;  2XTQ A;  1PHO A;  5DL6 A;  1GU9 A;  1IZN A;  4RLB A;  3AA0 A;  4AYI D;  4LSF A;  4XNL A;  2Y7S A;  5DL5 A;  2QEU A;  1GFQ A;  3A2S X;  4RL9 A;  4C69 X;  3BEY A;  5GTH O;  4K3B A;  3NJT A;  3POQ A;  2LFU A;  1S5L O;  2MNH A;  4RJW A;  2O4V A;  1HXX A;  3LK3 A;  3UPG A;  2KZ7 A;  2Y0K A;  4UB8 O;  1Q9F A;  4IL6 O;  4XNK A;  4K3C A;  3K19 A;  1BT9 A;  5ADX K;  4B61 A;  5EE2 A;  2R8A A;  5DL8 A;  3C1L A;  4AKR B;  1BH3 A;  4O49 A;  4PJ0 O;  4RLC A;  4AZL A;  2XE1 A; 
#chains in the Genus database with same CATH homology
 4FZL A;  5AFU K;  1ZHY A;  2ERV A;  4FUV A;  4AFK A;  3VZU X;  2K0L A;  1VKE A;  4JFB A;  2XMX A;  2Q0T A;  4O4U A;  3AAE B;  1BXW A;  1KNC A;  2N2L A;  3HOE A;  3WI5 A;  3AA1 A;  3T0S A;  1ZHW A;  2XE3 A;  2Y2X A;  1P4T A;  4O3Z A;  3RBH A;  2FGR A;  2ODJ A;  4AYE C;  2XTR A;  4G9Q A;  1MM4 A;  2QTK A;  2W80 C;  4FZN A;  5IYU A;  3PQS A;  1YS5 A;  3HWB A;  2KXP A;  5ADX L;  4N58 A;  1LW1 A;  2KDY A;  2F1V A;  3LK2 B;  2K4T A;  4F4B A;  3AA6 A;  2GMY A;  3FYX A;  4KR4 A;  2F1T A;  3JTY A;  2N2M A;  1ME5 A;  3DA4 A;  3O0E A;  4PUX A;  3SYB A;  1Q9G A;  4JCH A;  3AAA B;  3DA3 A;  3QRA A;  5PRN A;  3SY7 A;  4D64 A;  1GFM A;  2O4D A;  2ZLD A;  5DL7 A;  5FVN A;  5GV0 A;  3PQU A;  2XG6 A;  3POX A;  1OPF A;  4FT6 A;  2MHL A;  4LSE A;  4O3Y A;  2KC0 A;  1E54 A;  2ZFG A;  3G7G A;  3VY9 X;  1H6S 1;  5AFU L;  8PRN A;  3AA1 B;  2OYO A;  4GCS A;  3HW9 A;  2XTQ A;  3PRN A;  3VY8 X;  2POR A;  1PHO A;  2X27 X;  4GF4 A;  5DL6 A;  2YNK A;  2CWQ A;  3TZG A;  2XE5 A;  1GU9 A;  4GCQ A;  3LVY A;  4E1T A;  1IZN A;  4O3W A;  1ZHZ A;  2KXP B;  3KVD D;  4QQ1 A;  3SYS A;  4RLB A;  4U9C A;  3AA0 A;  4AYI D;  3AA6 B;  5G26 A;  4GHB A;  1GFP A;  4LSF A;  4XNL A;  2Y7S A;  1THQ A;  2M06 A;  5DL5 A;  2XE2 A;  5DIK A;  1G90 A;  2QEU A;  4BUM X;  1GFQ A;  2Y0L A;  3D7I A;  1GFN A;  3GP6 A;  3A2S X;  4KRA A;  4RL9 A;  3SZV A;  4AYN A;  6PRN A;  2IJC A;  3LK4 2;  3T24 A;  2J4U P;  4C69 X;  3BEY A;  4AYD C;  1QJP A;  5JDP A;  2ES9 A;  3POQ A;  3VZW X;  2LFU A;  4LSI A;  3VE2 A;  1HXU A;  4FRX A;  4AUI A;  3VE1 A;  4FES A;  2MNH A;  4FSP A;  4RJW A;  7PRN A;  4KR8 A;  3WI4 A;  3AA7 A;  1IZN B;  2O4V A;  3UU2 A;  2JMM A;  1HXX A;  4Z3T A;  3AA0 B;  4AKR A;  2OMF A;  2JN8 A;  3LK3 A;  3LK2 A;  2PRN A;  4D65 A;  2PRR A;  3UPG A;  2KZ7 A;  2PFX A;  1OSM A;  2Y0K A;  2M07 A;  2Y0H A;  3EMN X;  4O3X B;  1Q9F A;  1ZHX A;  3VZT X;  4FRT A;  2J1N A;  4AKM A;  3T20 A;  1HXT A;  3POR A;  3AAA A;  2AF7 A;  4G75 A;  4D5U A;  1P8C A;  4GCP A;  2GE4 A;  4XNK A;  1MPF A;  1GFO A;  3POU A;  2OUW A;  3HOL A;  4LSH A;  1QJ8 A;  4RJX A;  3AAE A;  3QRC A;  2W81 C;  5DIP A;  4AYM C;  1QJ9 A;  3K19 A;  4N59 A;  4FMS A;  1BT9 A;  5ADX K;  5T5F A;  5EE2 A;  4B61 A;  3AA7 B;  1MM5 A;  1PRN A;  2LHF A;  4FOZ A;  5DL8 A;  3SY9 A;  3C1L A;  5D5D A;  4AKR B;  3NSG A;  3LK3 B;  2FGQ X;  3V8U A;  4E1S A;  1BH3 A;  2KZ7 B;  4O49 A;  3C5O A;  2YPV A;  3LK4 1;  4FZM A;  4RLC A;  3SZD A;  3UAQ A;  4AZL A;  4O4X A;  4FSO A;  2XE1 A;  1ZHT A;  4G76 A;  1ORM A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3AAAA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations