3LK2A

Crystal structure of capz bound to the uncapping motif from carmil
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
270
structure length
270
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural characterization of a capping protein interaction motif defines a family of actin filament regulators
doi rcsb
molecule tags Protein binding
source organism Gallus gallus
molecule keywords F-actin-capping protein subunit alpha-1
total genus 80
structure length 270
sequence length 270
ec nomenclature
pdb deposition date 2010-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3lk2A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3lk2A02
3AA6B 3AAEB 3AA7B 1IZNA 2KXPB 3AA0A 4AKRB 3LK3A 5AFUL 5ADXL 3AAAA 3AA1B 3LK42 2KZ7B 3AAEA 3AA6A 3LK2B 3AA7A 5ADXK 2KXPA 5AFUK 4AKRA 3AA1A 1IZNB 2KZ7A 3AA0B 3LK3B 3LK41 3LK2A 3AAAB
chains in the Genus database with same CATH superfamily
4C4VB 1LW1A 4RLBA 1OSMA 3T0SA 3VE1A 3FYXA 1GFNA 4AYNA 5B66O 4N58A 4FUVA 5E79O 3BRYA 5KAFO 1T1LA 4KR4A 3C5OA 3SYBA 3VY8X 4FMSA 3RBHA 2XE2A 4UB6O 4AFKA 2R88A 1GFQA 1BH3A 2GE4A 4XNKA 4FESA 3NJTA 4D65A 4FZNA 2FGQX 3HWBA 3PGUA 2PRRA 2MHLA 2O4VA 4K3CA 4O4UA 2KXPB 2F1TA 2Y7SA 2Y2XA 4D64A 2J1NA 3KZIO 4C69X 5AFUK 3WU2O 5FVNA 2IJCA 5G3AA 4O49A 1BXWA 3UAQA 1MM4A 2X27X 2YNKA 5G38A 2KDYA 1E54A 4BUMX 3AA0A 3QRCA 3HOLA 4QQ1A 2LFUA 2AF7A 4AKRA 2KZ7A 2K4TA 3AAAB 5GTIO 2WJQA 3WI5A 2JMMA 5EE2A 4G76A 3DWNA 3LK42 3T24A 2R4LA 3LK2B 1P8CA 5JDPA 2QEUA 3AA1A 2WVPA 3PQUA 4GCSA 1ZHZA 4N75A 1VKEA 4FOZA 2IWVA 4FZMA 3PRNA 1H6S1 5D5DA 5KAIO 1ZHTA 5ADXL 4AYID 4AUIA 4C4VA 1BT9A 2MNHA 3DA4A 3GP6A 2LHFA 4O3YA 3LK3B 1QJ8A 4O3ZA 2Q0TA 1ME5A 3VZWX 2R8AA 3AAEB 1HXXA 3QRAA 3HW9A 3POQA 3SYSA 5T5FA 4KR8A 2GMYA 5DL8A 4FT6A 2JQYA 1PRNA 1IZNB 4AKMA 1Q9GA 2F1VA 3SY7A 2N2LA 4AYEC 2W81C 4LSFA 5DL6A 4F4BA 4RJWA 5AFUL 2XE5A 5DL7A 3VY9X 3O0EA 2ZFGA 4GF4A 3T20A 1G90A 3UU2A 3PGRA 2KXPA 4JCHA 1Q9FA 4N74A 4Z3TA 2X9KA 2M07A 3PF1A 3BS0A 4G9QA 4FZLA 4G75A 1HXTA 5IYUA 4PJ0O 3HOEA 4D5UA 4FRXA 1GFOA 4RLCA 2WJRA 4C00A 5DL5A 2M06A 2AXTO 3KVDD 2OYOA 2PRNA 2QTKA 1HXUA 3LK41 1GFMA 3V8UA 3PGSA 2Y0HA 3A0BO 4K3BA 3AA6B 4GHBA 5G26A 2W80C 3AAAA 5TISO 4UB8O 4U9CA 2PORA 4AYDC 7PRNA 3LK2A 1ZHYA 2OUWA 2R89A 3D7IA 3SY9A 2KC0A 3A2SX 1P4TA 3JTYA 3EMNX 1ORMA 3DA3A 3G7GA 4KRAA 4FSPA 1MM5A 4GCQA 2JN8A 1MPFA 2FGRA 2PFXA 1ZHWA 2O4DA 2XG6A 3LK3A 3PORA 5DIPA 1T16A 2R4NA 4FSOA 1YS5A 3AAEA 4CTDA 2ERVA 5ADXK 5G39A 4LSIA 3DZMA 2IWWA 4XNLA 3DWOX 4RL9A 3VZUX 4E1TA 4AYMC 4IL6O 3C1LA 4O4XA 1IZNA 4LSHA 4FRTA 1PHOA 3PQSA 4N59A 5B5EO 2N2MA 3K19A 2YPVA 3VE2A 3JCUO 3SZDA 2XE1A 2XTQA 3NSGA 3POUA 3LVYA 2Y0LA 2Y0KA 4B61A 2F1CX 1KNCA 2OMFA 4O3WA 4JFBA 5GV0A 5DIKA 3TZGA 2XTRA 3POXA 3BEYA 3AA0B 4GCPA 5H2FO 1QJ9A 3AA7B 4PR7A 4AKRB 1GFPA 4LSEA 3BRZA 2KZ7B 3WI4A 3AA6A 4FQEA 3AA7A 2ES9A 6PRNA 3SZVA 1OPFA 3A0HO 4PUXA 3UPGA 2ZLDA 2R4PA 4AZLA 3VZTX 4O3XB 2XMXA 2ODJA 3AA1B 2J4UP 4RJXA 8PRNA 1S5LO 2CWQA 1ZHXA 4E1SA 1THQA 2XE3A 5PRNA 1GU9A 5GTHO 2R4OA 1QJPA 2K0LA
chains in the Genus database with same CATH topology
3HOEA 4RL9A 3VZUX 1LW1A 4E1TA 4AYMC 4RLBA 4D5UA 3WI5A 1OSMA 3C1LA 2JMMA 4FRXA 4O4XA 1IZNA 5EE2A 3T0SA 3VE1A 4G76A 1GFOA 3AAAB 3FYXA 1GFNA 4LSHA 4AYNA 3LK42 4RLCA 3T24A 4FRTA 4G75A 1PHOA 3LK2B 4N58A 4FUVA 1P8CA 3PQSA 5JDPA 5DL5A 2M06A 3KVDD 2QEUA 2OYOA 3AA1A 2PRNA 4N59A 2QTKA 4KR4A 1HXUA 2N2MA 3C5OA 3LK41 1GFMA 3PQUA 3SYBA 4GCSA 3K19A 2YPVA 3VE2A 3VY8X 3V8UA 3SZDA 1ZHZA 2Y0HA 4FMSA 3RBHA 3AA6B 4GHBA 1VKEA 5G26A 4FOZA 2XE1A 2XE2A 2XTQA 4FZMA 2W80C 3PRNA 3NSGA 1H6S1 3POUA 5D5DA 3LVYA 1ZHTA 5ADXL 4AFKA 3AAAA 2Y0LA 4AYID 2Y0KA 4AUIA 4B61A 1KNCA 2OMFA 1GFQA 1BH3A 4O3WA 2GE4A 4JFBA 4XNKA 1BT9A 2MNHA 5DIKA 3DA4A 4FESA 4U9CA 3GP6A 3TZGA 2LHFA 2PORA 4AYDC 2XTRA 7PRNA 3POXA 4D65A 3BEYA 3AA0B 2FGQX 3HWBA 4FZNA 4O3YA 3LK3B 4GCPA 2PRRA 2MHLA 3LK2A 2O4VA 1ZHYA 1QJ8A 2OUWA 4O3ZA 3D7IA 2Q0TA 1ME5A 1QJ9A 3AAEB 3SY9A 3VZWX 1HXXA 4O4UA 3AA7B 2KXPB 3QRAA 2F1TA 2KC0A 3HW9A 2Y7SA 3POQA 1GFPA 4AKRB 3SYSA 3A2SX 4LSEA 2Y2XA 2KZ7B 5T5FA 1P4TA 3WI4A 4D64A 4KR8A 3AA6A 3JTYA 3EMNX 3AA7A 2J1NA 2GMYA 1ORMA 3DA3A 5DL8A 3G7GA 4KRAA 4C69X 2ES9A 5AFUK 5FVNA 6PRNA 3SZVA 4FT6A 2IJCA 4FSPA 1MM5A 4GCQA 1OPFA 1PRNA 1IZNB 4O49A 4AKMA 5GV0A 1BXWA 2JN8A 1Q9GA 4PUXA 3UAQA 1MM4A 1MPFA 2F1VA 2PFXA 2FGRA 2X27X 2YNKA 1ZHWA 3UPGA 3SY7A 2KDYA 2N2LA 2O4DA 1E54A 2XG6A 2ZLDA 4AYEC 2W81C 4LSFA 5DL6A 4AZLA 3VZTX 3AA0A 4O3XB 2XMXA 4F4BA 3LK3A 3PORA 4RJWA 5AFUL 2ODJA 5DIPA 2XE5A 3AA1B 3QRCA 4FSOA 2J4UP 4RJXA 8PRNA 2CWQA 1YS5A 5DL7A 3VY9X 3AAEA 3HOLA 1ZHXA 3O0EA 2ZFGA 2LFUA 2ERVA 4GF4A 4QQ1A 4E1SA 3T20A 3UU2A 1THQA 2AF7A 5ADXK 2KXPA 2XE3A 1GU9A 5PRNA 1G90A 4AKRA 4JCHA 1Q9FA 4LSIA 4Z3TA 2M07A 4BUMX 2KZ7A 4G9QA 2K4TA 4FZLA 4XNLA 1HXTA 5IYUA 1QJPA 2K0LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AA6 B;  3AAE B;  3AA7 B;  1IZN A;  2KXP B;  3AA0 A;  4AKR B;  3LK3 A;  5AFU L;  5ADX L;  3AAA A;  3AA1 B;  3LK4 2;  2KZ7 B;  3AAE A;  3AA6 A;  3LK2 B;  3AA7 A;  5ADX K;  2KXP A;  5AFU K;  4AKR A;  3AA1 A;  1IZN B;  2KZ7 A;  3AA0 B;  3LK3 B;  3LK4 1;  3LK2 A;  3AAA B; 
#chains in the Genus database with same CATH topology
 4C4V B;  1LW1 A;  4RLB A;  1OSM A;  3T0S A;  3VE1 A;  3FYX A;  1GFN A;  4AYN A;  5B66 O;  4N58 A;  4FUV A;  5E79 O;  3BRY A;  5KAF O;  1T1L A;  4KR4 A;  3C5O A;  3SYB A;  3VY8 X;  4FMS A;  3RBH A;  2XE2 A;  4UB6 O;  4AFK A;  2R88 A;  1GFQ A;  1BH3 A;  2GE4 A;  4XNK A;  4FES A;  3NJT A;  4D65 A;  4FZN A;  2FGQ X;  3HWB A;  3PGU A;  2PRR A;  2MHL A;  2O4V A;  4K3C A;  4O4U A;  2KXP B;  2F1T A;  2Y7S A;  2Y2X A;  4D64 A;  2J1N A;  3KZI O;  4C69 X;  5AFU K;  3WU2 O;  5FVN A;  2IJC A;  5G3A A;  4O49 A;  1BXW A;  3UAQ A;  1MM4 A;  2X27 X;  2YNK A;  5G38 A;  2KDY A;  1E54 A;  4BUM X;  3AA0 A;  3QRC A;  3HOL A;  4QQ1 A;  2LFU A;  2AF7 A;  4AKR A;  2KZ7 A;  2K4T A;  3AAA B;  5GTI O;  2WJQ A;  3WI5 A;  2JMM A;  5EE2 A;  4G76 A;  3DWN A;  3LK4 2;  3T24 A;  2R4L A;  3LK2 B;  1P8C A;  5JDP A;  2QEU A;  3AA1 A;  2WVP A;  3PQU A;  4GCS A;  1ZHZ A;  4N75 A;  1VKE A;  4FOZ A;  2IWV A;  4FZM A;  3PRN A;  1H6S 1;  5D5D A;  5KAI O;  1ZHT A;  5ADX L;  4AYI D;  4AUI A;  4C4V A;  1BT9 A;  2MNH A;  3DA4 A;  3GP6 A;  2LHF A;  4O3Y A;  3LK3 B;  1QJ8 A;  4O3Z A;  2Q0T A;  1ME5 A;  3VZW X;  2R8A A;  3AAE B;  1HXX A;  3QRA A;  3HW9 A;  3POQ A;  3SYS A;  5T5F A;  4KR8 A;  2GMY A;  5DL8 A;  4FT6 A;  2JQY A;  1PRN A;  1IZN B;  4AKM A;  1Q9G A;  2F1V A;  3SY7 A;  2N2L A;  4AYE C;  2W81 C;  4LSF A;  5DL6 A;  4F4B A;  4RJW A;  5AFU L;  2XE5 A;  5DL7 A;  3VY9 X;  3O0E A;  2ZFG A;  4GF4 A;  3T20 A;  1G90 A;  3UU2 A;  3PGR A;  2KXP A;  4JCH A;  1Q9F A;  4N74 A;  4Z3T A;  2X9K A;  2M07 A;  3PF1 A;  3BS0 A;  4G9Q A;  4FZL A;  4G75 A;  1HXT A;  5IYU A;  4PJ0 O;  3HOE A;  4D5U A;  4FRX A;  1GFO A;  4RLC A;  2WJR A;  4C00 A;  5DL5 A;  2M06 A;  2AXT O;  3KVD D;  2OYO A;  2PRN A;  2QTK A;  1HXU A;  3LK4 1;  1GFM A;  3V8U A;  3PGS A;  2Y0H A;  3A0B O;  4K3B A;  3AA6 B;  4GHB A;  5G26 A;  2W80 C;  3AAA A;  5TIS O;  4UB8 O;  4U9C A;  2POR A;  4AYD C;  7PRN A;  3LK2 A;  1ZHY A;  2OUW A;  2R89 A;  3D7I A;  3SY9 A;  2KC0 A;  3A2S X;  1P4T A;  3JTY A;  3EMN X;  1ORM A;  3DA3 A;  3G7G A;  4KRA A;  4FSP A;  1MM5 A;  4GCQ A;  2JN8 A;  1MPF A;  2FGR A;  2PFX A;  1ZHW A;  2O4D A;  2XG6 A;  3LK3 A;  3POR A;  5DIP A;  1T16 A;  2R4N A;  4FSO A;  1YS5 A;  3AAE A;  4CTD A;  2ERV A;  5ADX K;  5G39 A;  4LSI A;  3DZM A;  2IWW A;  4XNL A;  3DWO X;  4RL9 A;  3VZU X;  4E1T A;  4AYM C;  4IL6 O;  3C1L A;  4O4X A;  1IZN A;  4LSH A;  4FRT A;  1PHO A;  3PQS A;  4N59 A;  5B5E O;  2N2M A;  3K19 A;  2YPV A;  3VE2 A;  3JCU O;  3SZD A;  2XE1 A;  2XTQ A;  3NSG A;  3POU A;  3LVY A;  2Y0L A;  2Y0K A;  4B61 A;  2F1C X;  1KNC A;  2OMF A;  4O3W A;  4JFB A;  5GV0 A;  5DIK A;  3TZG A;  2XTR A;  3POX A;  3BEY A;  3AA0 B;  4GCP A;  5H2F O;  1QJ9 A;  3AA7 B;  4PR7 A;  4AKR B;  1GFP A;  4LSE A;  3BRZ A;  2KZ7 B;  3WI4 A;  3AA6 A;  4FQE A;  3AA7 A;  2ES9 A;  6PRN A;  3SZV A;  1OPF A;  3A0H O;  4PUX A;  3UPG A;  2ZLD A;  2R4P A;  4AZL A;  3VZT X;  4O3X B;  2XMX A;  2ODJ A;  3AA1 B;  2J4U P;  4RJX A;  8PRN A;  1S5L O;  2CWQ A;  1ZHX A;  4E1S A;  1THQ A;  2XE3 A;  5PRN A;  1GU9 A;  5GTH O;  2R4O A;  1QJP A;  2K0L A; 
#chains in the Genus database with same CATH homology
 3HOE A;  4RL9 A;  3VZU X;  1LW1 A;  4E1T A;  4AYM C;  4RLB A;  4D5U A;  3WI5 A;  1OSM A;  3C1L A;  2JMM A;  4FRX A;  4O4X A;  1IZN A;  5EE2 A;  3T0S A;  3VE1 A;  4G76 A;  1GFO A;  3AAA B;  3FYX A;  1GFN A;  4LSH A;  4AYN A;  3LK4 2;  4RLC A;  3T24 A;  4FRT A;  4G75 A;  1PHO A;  3LK2 B;  4N58 A;  4FUV A;  1P8C A;  3PQS A;  5JDP A;  5DL5 A;  2M06 A;  3KVD D;  2QEU A;  2OYO A;  3AA1 A;  2PRN A;  4N59 A;  2QTK A;  4KR4 A;  1HXU A;  2N2M A;  3C5O A;  3LK4 1;  1GFM A;  3PQU A;  3SYB A;  4GCS A;  3K19 A;  2YPV A;  3VE2 A;  3VY8 X;  3V8U A;  3SZD A;  1ZHZ A;  2Y0H A;  4FMS A;  3RBH A;  3AA6 B;  4GHB A;  1VKE A;  5G26 A;  4FOZ A;  2XE1 A;  2XE2 A;  2XTQ A;  4FZM A;  2W80 C;  3PRN A;  3NSG A;  1H6S 1;  3POU A;  5D5D A;  3LVY A;  1ZHT A;  5ADX L;  4AFK A;  3AAA A;  2Y0L A;  4AYI D;  2Y0K A;  4AUI A;  4B61 A;  1KNC A;  2OMF A;  1GFQ A;  1BH3 A;  4O3W A;  2GE4 A;  4JFB A;  4XNK A;  1BT9 A;  2MNH A;  5DIK A;  3DA4 A;  4FES A;  4U9C A;  3GP6 A;  3TZG A;  2LHF A;  2POR A;  4AYD C;  2XTR A;  7PRN A;  3POX A;  4D65 A;  3BEY A;  3AA0 B;  2FGQ X;  3HWB A;  4FZN A;  4O3Y A;  3LK3 B;  4GCP A;  2PRR A;  2MHL A;  3LK2 A;  2O4V A;  1ZHY A;  1QJ8 A;  2OUW A;  4O3Z A;  3D7I A;  2Q0T A;  1ME5 A;  1QJ9 A;  3AAE B;  3SY9 A;  3VZW X;  1HXX A;  4O4U A;  3AA7 B;  2KXP B;  3QRA A;  2F1T A;  2KC0 A;  3HW9 A;  2Y7S A;  3POQ A;  1GFP A;  4AKR B;  3SYS A;  3A2S X;  4LSE A;  2Y2X A;  2KZ7 B;  5T5F A;  1P4T A;  3WI4 A;  4D64 A;  4KR8 A;  3AA6 A;  3JTY A;  3EMN X;  3AA7 A;  2J1N A;  2GMY A;  1ORM A;  3DA3 A;  5DL8 A;  3G7G A;  4KRA A;  4C69 X;  2ES9 A;  5AFU K;  5FVN A;  6PRN A;  3SZV A;  4FT6 A;  2IJC A;  4FSP A;  1MM5 A;  4GCQ A;  1OPF A;  1PRN A;  1IZN B;  4O49 A;  4AKM A;  5GV0 A;  1BXW A;  2JN8 A;  1Q9G A;  4PUX A;  3UAQ A;  1MM4 A;  1MPF A;  2F1V A;  2PFX A;  2FGR A;  2X27 X;  2YNK A;  1ZHW A;  3UPG A;  3SY7 A;  2KDY A;  2N2L A;  2O4D A;  1E54 A;  2XG6 A;  2ZLD A;  4AYE C;  2W81 C;  4LSF A;  5DL6 A;  4AZL A;  3VZT X;  3AA0 A;  4O3X B;  2XMX A;  4F4B A;  3LK3 A;  3POR A;  4RJW A;  5AFU L;  2ODJ A;  5DIP A;  2XE5 A;  3AA1 B;  3QRC A;  4FSO A;  2J4U P;  4RJX A;  8PRN A;  2CWQ A;  1YS5 A;  5DL7 A;  3VY9 X;  3AAE A;  3HOL A;  1ZHX A;  3O0E A;  2ZFG A;  2LFU A;  2ERV A;  4GF4 A;  4QQ1 A;  4E1S A;  3T20 A;  3UU2 A;  1THQ A;  2AF7 A;  5ADX K;  2KXP A;  2XE3 A;  1GU9 A;  5PRN A;  1G90 A;  4AKR A;  4JCH A;  1Q9F A;  4LSI A;  4Z3T A;  2M07 A;  4BUM X;  2KZ7 A;  4G9Q A;  2K4T A;  4FZL A;  4XNL A;  1HXT A;  5IYU A;  1QJP A;  2K0L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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