3LK2A

Crystal structure of capz bound to the uncapping motif from carmil
Total Genus 80
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
270
structure length
270
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural characterization of a capping protein interaction motif defines a family of actin filament regulators
doi rcsb
molecule tags Protein binding
source organism Gallus gallus
molecule keywords F-actin-capping protein subunit alpha-1
total genus 80
structure length 270
sequence length 270
ec nomenclature
pdb deposition date 2010-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3lk2A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3lk2A02
3LK2A 5ADXK 3AAAB 3AA0A 5ADXL 2KZ7A 5AFUK 5AFUL 3LK3A 3LK2B 3AA0B 3AA6A 2KZ7B 4AKRA 3LK3B 2KXPA 3AA6B 3AAEA 4AKRB 2KXPB 3AAEB 3AA7A 1IZNA 3AA1A 3LK41 3AA7B 3LK42 3AAAA 1IZNB 3AA1B
chains in the Genus database with same CATH superfamily
2PORA 1KNCA 5G3AA 3A0HO 5GTIO 3D7IA 3AA0B 2W81C 1ORMA 4AZLA 2O4DA 2Y7SA 2F1VA 4LSHA 2KXPB 2XE1A 3AA7B 2N2MA 5GV0A 5ADXK 4G76A 4FOZA 3AA6A 2J4UP 3FYXA 4KRAA 2F1TA 4LSEA 4O4XA 3AAEA 2JN8A 4U9CA 3POUA 1GFPA 2QEUA 4AYEC 1MM5A 3AAAA 2LHFA 2KC0A 2ZLDA 4FUVA 5DL8A 1HXUA 5ADXL 2KZ7A 2GE4A 1LW1A 1BT9A 3PRNA 3T24A 2IWWA 2XE2A 1ZHWA 4N59A 2M07A 5PRNA 1PHOA 3VZUX 2R4LA 5G38A 3LK2A 2R8AA 2R4NA 5AFUK 7PRNA 2LFUA 2X9KA 3PORA 4RJXA 3VE2A 2K4TA 3AA6B 3HWBA 3K19A 3KVDD 3AAEB 3A0BO 1MPFA 4Z3TA 4AYMC 5G26A 4GCPA 2O4VA 3AAAB 3WI5A 5AFUL 3V8UA 3PGRA 3TZGA 6PRNA 4K3CA 1Q9GA 3PGUA 2KZ7B 4BUMX 5EE2A 5KAFO 2W80C 3PQSA 3VY9X 1MM4A 5DL6A 3SYSA 2M06A 4GCSA 3BS0A 3DWNA 1HXTA 2OMFA 2WVPA 2JMMA 2FGRA 2IWVA 4D5UA 3LK3A 3LK2B 4AYNA 4AUIA 4N74A 4B61A 2F1CX 3PGSA 2OUWA 1ZHZA 4RLBA 3LK41 4XNLA 2XE3A 3UU2A 3SZDA 2XG6A 5D5DA 3HOLA 3SZVA 3T20A 2OYOA 4AKMA 5B5EO 4JFBA 4JCHA 3UAQA 4PR7A 3DZMA 3G7GA 3EMNX 4FZLA 3AA1A 4RJWA 3DWOX 3BRYA 3UPGA 4G75A 5E79O 4UB8O 5FVNA 3RBHA 2R4PA 4AKRA 3SYBA 3LK3B 3T0SA 5JDPA 2KDYA 4FZMA 3C1LA 2WJQA 2PRRA 1ZHTA 4PJ0O 2YNKA 1HXXA 4QQ1A 2J1NA 2MHLA 4O3XB 3SY7A 4O3ZA 1H6S1 3JCUO 1G90A 4FZNA 1BXWA 4GHBA 2Y0HA 3AA1B 4FMSA 4N75A 4FESA 2MNHA 4AYID 4GF4A 4KR4A 2JQYA 4FRXA 4AKRB 5DL5A 4E1SA 4FSOA 4C69X 2IJCA 1VKEA 3LK42 3PQUA 3POQA 4C4VA 1GFOA 2ERVA 2R89A 5TISO 1THQA 4O49A 3A2SX 5KAIO 5DIKA 3NSGA 4K3BA 5T5FA 3C5OA 1BH3A 3NJTA 1YS5A 4N58A 1IZNA 2YPVA 4PUXA 2AF7A 3WU2O 4FT6A 1GFQA 1QJ8A 1QJPA 2Y2XA 2XTRA 2R88A 2ES9A 3QRCA 4C00A 4XNKA 2WJRA 3PF1A 1ZHXA 2PRNA 4G9QA 2CWQA 3JTYA 3HW9A 3VZTX 2FGQX 4C4VB 8PRNA 3VZWX 5H2FO 4AYDC 3QRAA 4O3WA 3KZIO 5IYUA 1P8CA 3LVYA 1ZHYA 4O4UA 1E54A 2Y0KA 4FSPA 1GFNA 4KR8A 5G39A 1OSMA 1IZNB 4UB6O 3HOEA 5DL7A 2XTQA 1Q9FA 4E1TA 2PFXA 2XE5A 4FRTA 3DA4A 1T1LA 1T16A 1PRNA 2AXTO 3WI4A 3BRZA 2R4OA 1P4TA 4AFKA 3AA0A 1ME5A 4FQEA 4RL9A 2Y0LA 4D64A 5DIPA 1S5LO 2K0LA 2QTKA 2KXPA 1OPFA 3O0EA 3AA7A 3DA3A 4LSFA 4CTDA 1GU9A 3BEYA 4GCQA 1QJ9A 4LSIA 2XMXA 2X27X 4D65A 3VY8X 4RLCA 4F4BA 1GFMA 4IL6O 3VE1A 4O3YA 3SY9A 5GTHO 2N2LA 5B66O 3POXA 2ODJA 2GMYA 2ZFGA 2Q0TA 3GP6A
chains in the Genus database with same CATH topology
3HW9A 2PORA 1KNCA 2YNKA 1HXXA 3AAAB 4QQ1A 3VZTX 3WI5A 2FGQX 2J1NA 5AFUL 3V8UA 8PRNA 3TZGA 3VZWX 3D7IA 4AYDC 6PRNA 1Q9GA 2MHLA 3AA0B 3QRAA 4O3WA 2W81C 2KZ7B 4O3XB 3SY7A 1ORMA 4AZLA 4BUMX 2O4DA 5IYUA 2Y7SA 5EE2A 1P8CA 2W80C 3PQSA 3LVYA 1MM4A 5DL6A 1ZHYA 2F1VA 3SYSA 4LSHA 3VY9X 2M06A 4O4UA 4GCSA 2KXPB 2XE1A 1E54A 2Y0KA 4O3ZA 1H6S1 4FSPA 1GFNA 1G90A 4FZNA 1BXWA 4GHBA 1HXTA 3AA7B 4KR8A 2N2MA 1OSMA 2Y0HA 2OMFA 1IZNB 3AA1B 4FMSA 2JMMA 3HOEA 5GV0A 5ADXK 2XTQA 1Q9FA 2FGRA 5DL7A 4E1TA 4D5UA 4G76A 2PFXA 3LK3A 3LK2B 4FOZA 4FESA 2MNHA 4AYNA 3AA6A 2XE5A 4AUIA 2J4UP 3FYXA 4KRAA 2F1TA 4FRTA 3DA4A 4GF4A 4KR4A 4LSEA 4O4XA 4AYID 4B61A 4FRXA 3AAEA 2JN8A 4U9CA 4AKRB 3POUA 1PRNA 5DL5A 2OUWA 4E1SA 4FSOA 3WI4A 4C69X 1GFPA 2QEUA 2IJCA 1ZHZA 4RLBA 1VKEA 4AYEC 3LK41 1MM5A 4XNLA 3LK42 3AAAA 2LHFA 3PQUA 2XE3A 1P4TA 2KC0A 2ZLDA 3POQA 3UU2A 2ERVA 1GFOA 4AFKA 4FUVA 5DL8A 3AA0A 1HXUA 1THQA 4O49A 5ADXL 1ME5A 2KZ7A 3SZDA 2GE4A 2XG6A 3A2SX 5D5DA 3HOLA 1LW1A 1BT9A 4RL9A 2Y0LA 3PRNA 3SZVA 3T24A 4D64A 5DIPA 2OYOA 5DIKA 2K0LA 2QTKA 3NSGA 3T20A 4AKMA 5T5FA 4JFBA 2KXPA 2XE2A 4JCHA 1OPFA 3C5OA 1ZHWA 3UAQA 3O0EA 1BH3A 4N59A 2M07A 4N58A 1YS5A 3G7GA 5PRNA 3AA7A 3DA3A 3EMNX 4LSFA 1GU9A 1IZNA 3AA1A 2YPVA 4FZLA 4PUXA 4RJWA 1PHOA 2AF7A 3BEYA 3VZUX 4GCQA 3UPGA 1QJ9A 4G75A 4FT6A 1GFQA 1QJ8A 1QJPA 4LSIA 3LK2A 2XMXA 2Y2XA 2X27X 5AFUK 2XTRA 2LFUA 5FVNA 4D65A 7PRNA 3PORA 3VY8X 4RJXA 3VE2A 3RBHA 2ES9A 3QRCA 4AKRA 3SYBA 4RLCA 3LK3B 3T0SA 4F4BA 2K4TA 1GFMA 3AA6B 2O4VA 4XNKA 3VE1A 5JDPA 3HWBA 2KDYA 3K19A 3KVDD 4O3YA 3SY9A 4FZMA 2N2LA 3AAEB 3C1LA 3POXA 2ODJA 1ZHXA 1MPFA 2PRNA 2GMYA 2PRRA 4G9QA 2Q0TA 2ZFGA 4Z3TA 4AYMC 1ZHTA 5G26A 4GCPA 3GP6A 2CWQA 3JTYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LK2 A;  5ADX K;  3AAA B;  3AA0 A;  5ADX L;  2KZ7 A;  5AFU K;  5AFU L;  3LK3 A;  3LK2 B;  3AA0 B;  3AA6 A;  2KZ7 B;  4AKR A;  3LK3 B;  2KXP A;  3AA6 B;  3AAE A;  4AKR B;  2KXP B;  3AAE B;  3AA7 A;  1IZN A;  3AA1 A;  3LK4 1;  3AA7 B;  3LK4 2;  3AAA A;  1IZN B;  3AA1 B; 
#chains in the Genus database with same CATH topology
 2POR A;  1KNC A;  5G3A A;  3A0H O;  5GTI O;  3D7I A;  3AA0 B;  2W81 C;  1ORM A;  4AZL A;  2O4D A;  2Y7S A;  2F1V A;  4LSH A;  2KXP B;  2XE1 A;  3AA7 B;  2N2M A;  5GV0 A;  5ADX K;  4G76 A;  4FOZ A;  3AA6 A;  2J4U P;  3FYX A;  4KRA A;  2F1T A;  4LSE A;  4O4X A;  3AAE A;  2JN8 A;  4U9C A;  3POU A;  1GFP A;  2QEU A;  4AYE C;  1MM5 A;  3AAA A;  2LHF A;  2KC0 A;  2ZLD A;  4FUV A;  5DL8 A;  1HXU A;  5ADX L;  2KZ7 A;  2GE4 A;  1LW1 A;  1BT9 A;  3PRN A;  3T24 A;  2IWW A;  2XE2 A;  1ZHW A;  4N59 A;  2M07 A;  5PRN A;  1PHO A;  3VZU X;  2R4L A;  5G38 A;  3LK2 A;  2R8A A;  2R4N A;  5AFU K;  7PRN A;  2LFU A;  2X9K A;  3POR A;  4RJX A;  3VE2 A;  2K4T A;  3AA6 B;  3HWB A;  3K19 A;  3KVD D;  3AAE B;  3A0B O;  1MPF A;  4Z3T A;  4AYM C;  5G26 A;  4GCP A;  2O4V A;  3AAA B;  3WI5 A;  5AFU L;  3V8U A;  3PGR A;  3TZG A;  6PRN A;  4K3C A;  1Q9G A;  3PGU A;  2KZ7 B;  4BUM X;  5EE2 A;  5KAF O;  2W80 C;  3PQS A;  3VY9 X;  1MM4 A;  5DL6 A;  3SYS A;  2M06 A;  4GCS A;  3BS0 A;  3DWN A;  1HXT A;  2OMF A;  2WVP A;  2JMM A;  2FGR A;  2IWV A;  4D5U A;  3LK3 A;  3LK2 B;  4AYN A;  4AUI A;  4N74 A;  4B61 A;  2F1C X;  3PGS A;  2OUW A;  1ZHZ A;  4RLB A;  3LK4 1;  4XNL A;  2XE3 A;  3UU2 A;  3SZD A;  2XG6 A;  5D5D A;  3HOL A;  3SZV A;  3T20 A;  2OYO A;  4AKM A;  5B5E O;  4JFB A;  4JCH A;  3UAQ A;  4PR7 A;  3DZM A;  3G7G A;  3EMN X;  4FZL A;  3AA1 A;  4RJW A;  3DWO X;  3BRY A;  3UPG A;  4G75 A;  5E79 O;  4UB8 O;  5FVN A;  3RBH A;  2R4P A;  4AKR A;  3SYB A;  3LK3 B;  3T0S A;  5JDP A;  2KDY A;  4FZM A;  3C1L A;  2WJQ A;  2PRR A;  1ZHT A;  4PJ0 O;  2YNK A;  1HXX A;  4QQ1 A;  2J1N A;  2MHL A;  4O3X B;  3SY7 A;  4O3Z A;  1H6S 1;  3JCU O;  1G90 A;  4FZN A;  1BXW A;  4GHB A;  2Y0H A;  3AA1 B;  4FMS A;  4N75 A;  4FES A;  2MNH A;  4AYI D;  4GF4 A;  4KR4 A;  2JQY A;  4FRX A;  4AKR B;  5DL5 A;  4E1S A;  4FSO A;  4C69 X;  2IJC A;  1VKE A;  3LK4 2;  3PQU A;  3POQ A;  4C4V A;  1GFO A;  2ERV A;  2R89 A;  5TIS O;  1THQ A;  4O49 A;  3A2S X;  5KAI O;  5DIK A;  3NSG A;  4K3B A;  5T5F A;  3C5O A;  1BH3 A;  3NJT A;  1YS5 A;  4N58 A;  1IZN A;  2YPV A;  4PUX A;  2AF7 A;  3WU2 O;  4FT6 A;  1GFQ A;  1QJ8 A;  1QJP A;  2Y2X A;  2XTR A;  2R88 A;  2ES9 A;  3QRC A;  4C00 A;  4XNK A;  2WJR A;  3PF1 A;  1ZHX A;  2PRN A;  4G9Q A;  2CWQ A;  3JTY A;  3HW9 A;  3VZT X;  2FGQ X;  4C4V B;  8PRN A;  3VZW X;  5H2F O;  4AYD C;  3QRA A;  4O3W A;  3KZI O;  5IYU A;  1P8C A;  3LVY A;  1ZHY A;  4O4U A;  1E54 A;  2Y0K A;  4FSP A;  1GFN A;  4KR8 A;  5G39 A;  1OSM A;  1IZN B;  4UB6 O;  3HOE A;  5DL7 A;  2XTQ A;  1Q9F A;  4E1T A;  2PFX A;  2XE5 A;  4FRT A;  3DA4 A;  1T1L A;  1T16 A;  1PRN A;  2AXT O;  3WI4 A;  3BRZ A;  2R4O A;  1P4T A;  4AFK A;  3AA0 A;  1ME5 A;  4FQE A;  4RL9 A;  2Y0L A;  4D64 A;  5DIP A;  1S5L O;  2K0L A;  2QTK A;  2KXP A;  1OPF A;  3O0E A;  3AA7 A;  3DA3 A;  4LSF A;  4CTD A;  1GU9 A;  3BEY A;  4GCQ A;  1QJ9 A;  4LSI A;  2XMX A;  2X27 X;  4D65 A;  3VY8 X;  4RLC A;  4F4B A;  1GFM A;  4IL6 O;  3VE1 A;  4O3Y A;  3SY9 A;  5GTH O;  2N2L A;  5B66 O;  3POX A;  2ODJ A;  2GMY A;  2ZFG A;  2Q0T A;  3GP6 A; 
#chains in the Genus database with same CATH homology
 3HW9 A;  2POR A;  1KNC A;  2YNK A;  1HXX A;  3AAA B;  4QQ1 A;  3VZT X;  3WI5 A;  2FGQ X;  2J1N A;  5AFU L;  3V8U A;  8PRN A;  3TZG A;  3VZW X;  3D7I A;  4AYD C;  6PRN A;  1Q9G A;  2MHL A;  3AA0 B;  3QRA A;  4O3W A;  2W81 C;  2KZ7 B;  4O3X B;  3SY7 A;  1ORM A;  4AZL A;  4BUM X;  2O4D A;  5IYU A;  2Y7S A;  5EE2 A;  1P8C A;  2W80 C;  3PQS A;  3LVY A;  1MM4 A;  5DL6 A;  1ZHY A;  2F1V A;  3SYS A;  4LSH A;  3VY9 X;  2M06 A;  4O4U A;  4GCS A;  2KXP B;  2XE1 A;  1E54 A;  2Y0K A;  4O3Z A;  1H6S 1;  4FSP A;  1GFN A;  1G90 A;  4FZN A;  1BXW A;  4GHB A;  1HXT A;  3AA7 B;  4KR8 A;  2N2M A;  1OSM A;  2Y0H A;  2OMF A;  1IZN B;  3AA1 B;  4FMS A;  2JMM A;  3HOE A;  5GV0 A;  5ADX K;  2XTQ A;  1Q9F A;  2FGR A;  5DL7 A;  4E1T A;  4D5U A;  4G76 A;  2PFX A;  3LK3 A;  3LK2 B;  4FOZ A;  4FES A;  2MNH A;  4AYN A;  3AA6 A;  2XE5 A;  4AUI A;  2J4U P;  3FYX A;  4KRA A;  2F1T A;  4FRT A;  3DA4 A;  4GF4 A;  4KR4 A;  4LSE A;  4O4X A;  4AYI D;  4B61 A;  4FRX A;  3AAE A;  2JN8 A;  4U9C A;  4AKR B;  3POU A;  1PRN A;  5DL5 A;  2OUW A;  4E1S A;  4FSO A;  3WI4 A;  4C69 X;  1GFP A;  2QEU A;  2IJC A;  1ZHZ A;  4RLB A;  1VKE A;  4AYE C;  3LK4 1;  1MM5 A;  4XNL A;  3LK4 2;  3AAA A;  2LHF A;  3PQU A;  2XE3 A;  1P4T A;  2KC0 A;  2ZLD A;  3POQ A;  3UU2 A;  2ERV A;  1GFO A;  4AFK A;  4FUV A;  5DL8 A;  3AA0 A;  1HXU A;  1THQ A;  4O49 A;  5ADX L;  1ME5 A;  2KZ7 A;  3SZD A;  2GE4 A;  2XG6 A;  3A2S X;  5D5D A;  3HOL A;  1LW1 A;  1BT9 A;  4RL9 A;  2Y0L A;  3PRN A;  3SZV A;  3T24 A;  4D64 A;  5DIP A;  2OYO A;  5DIK A;  2K0L A;  2QTK A;  3NSG A;  3T20 A;  4AKM A;  5T5F A;  4JFB A;  2KXP A;  2XE2 A;  4JCH A;  1OPF A;  3C5O A;  1ZHW A;  3UAQ A;  3O0E A;  1BH3 A;  4N59 A;  2M07 A;  4N58 A;  1YS5 A;  3G7G A;  5PRN A;  3AA7 A;  3DA3 A;  3EMN X;  4LSF A;  1GU9 A;  1IZN A;  3AA1 A;  2YPV A;  4FZL A;  4PUX A;  4RJW A;  1PHO A;  2AF7 A;  3BEY A;  3VZU X;  4GCQ A;  3UPG A;  1QJ9 A;  4G75 A;  4FT6 A;  1GFQ A;  1QJ8 A;  1QJP A;  4LSI A;  3LK2 A;  2XMX A;  2Y2X A;  2X27 X;  5AFU K;  2XTR A;  2LFU A;  5FVN A;  4D65 A;  7PRN A;  3POR A;  3VY8 X;  4RJX A;  3VE2 A;  3RBH A;  2ES9 A;  3QRC A;  4AKR A;  3SYB A;  4RLC A;  3LK3 B;  3T0S A;  4F4B A;  2K4T A;  1GFM A;  3AA6 B;  2O4V A;  4XNK A;  3VE1 A;  5JDP A;  3HWB A;  2KDY A;  3K19 A;  3KVD D;  4O3Y A;  3SY9 A;  4FZM A;  2N2L A;  3AAE B;  3C1L A;  3POX A;  2ODJ A;  1ZHX A;  1MPF A;  2PRN A;  2GMY A;  2PRR A;  4G9Q A;  2Q0T A;  2ZFG A;  4Z3T A;  4AYM C;  1ZHT A;  5G26 A;  4GCP A;  3GP6 A;  2CWQ A;  3JTY A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...