3LK3A

Crystal structure of capz bound to the cpi and csi uncapping motifs from carmil
Total Genus 76

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
270
structure length
266
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDLKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (10-23)S7 (151-164)S9 (185-198)AH3 (43-61)S4 (94-99)S1 (64-66)S3 (86-89)AH4 (118-135)TIV1 (67-70)S2 (73-75)TIV3 (136-139)3H2 (165-167)3H1 (78-80)EMPTYTIV2 (89-92)TI2 (99-102)TI'1 (83-86)TI3 (100-103)TIV4 (147-150)TVIa1 (182-185)S8 (169-182)AH5 (221-258)S10 (204-217)TII1 (25-28)AH2 (28-40)S6 (139-148)TII2 (199-202)TVIII1 (260-263)TI1 (90-93)S5 (104-110)TI4 (263-266)Updating...
connected with : NaN
molecule tags Protein binding
source organism Gallus gallus
publication title Structural characterization of a capping protein interaction motif defines a family of actin filament regulators
doi rcsb
molecule keywords F-actin-capping protein subunit alpha-1
total genus 76
structure length 266
sequence length 270
ec nomenclature
pdb deposition date 2010-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3lk3A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3lk3A02
3AA6B 3AA7B 3LK2B 3AA1B 3LK3A 1IZNA 3LK41 2KZ7B 3AA6A 3AA7A 5ADXL 3AAEB 3LK2A 3AA1A 5ADXK 5AFUL 2KZ7A 4AKRB 3AA0B 3AAEA 2KXPB 3AAAB 5AFUK 3LK42 4AKRA 3AA0A 2KXPA 3LK3B 1IZNB 3AAAA
chains in the Genus database with same CATH superfamily
2MNHA 3FYXA 3PQSA 5PRNA 4D64A 2KZ7A 4AZLA 3BRYA 2J4UP 5B5EO 2IJCA 2K0LA 3AA0A 2R4OA 3VE1A 4O3ZA 2Y0LA 2QEUA 2M07A 3PRNA 3SYSA 2XE2A 4GCQA 2XE1A 3DA4A 3AAEA 1H6S1 4AYMC 4JCHA 3VE2A 3PGUA 2WJQA 3PF1A 2LFUA 3DWNA 2YNKA 2KZ7B 2AF7A 2MHLA 1GFOA 5DIKA 3AA0B 4AYID 4C69X 5G38A 3D7IA 1ZHZA 4O3YA 3VZWX 3T0SA 2Y0HA 2KXPA 3POXA 2OYOA 1OSMA 4AUIA 1GU9A 4LSEA 3AAEB 3POUA 3G7GA 1E54A 3VZTX 2J1NA 3LVYA 2WJRA 4E1SA 2XG6A 4O4UA 3O0EA 2F1CX 4U9CA 4PUXA 4Z3TA 2QTKA 3A2SX 3LK2A 4O3WA 4G76A 3BEYA 2XMXA 1LW1A 2F1TA 3JTYA 3KVDD 2KXPB 5AFUK 1MM5A 5KAIO 2XE5A 3K19A 3DWOX 4O3XB 2N2MA 3LK3A 1Q9FA 3A0BO 2WVPA 4B61A 2PRRA 3WU2O 4LSHA 3UPGA 3EMNX 1Q9GA 2KC0A 4KR8A 5DL7A 4D65A 5GV0A 3LK2B 5G3AA 1ZHWA 3WI4A 8PRNA 2FGQX 4F4BA 2JN8A 2JMMA 3UU2A 2IWWA 2Y0KA 4FRTA 1GFMA 2GE4A 3LK3B 4FRXA 4GF4A 1ZHXA 2IWVA 4N75A 4PJ0O 2X9KA 4AKMA 4KR4A 3AA1A 4PR7A 2ZLDA 5DL5A 4C4VA 4AYDC 2XTQA 3AAAA 3BS0A 2Q0TA 3SYBA 1MPFA 1IZNA 5ADXL 4G75A 4GHBA 4N59A 4FMSA 3T20A 1ME5A 2XE3A 3V8UA 3VZUX 7PRNA 3DA3A 1MM4A 4JFBA 3VY9X 3HOEA 5G39A 3AA1B 2AXTO 3SY9A 5DIPA 4IL6O 3C5OA 1P8CA 3WI5A 2ERVA 2W80C 1YS5A 2JQYA 2LHFA 4C4VB 1GFPA 4FESA 5DL6A 3AAAB 3PGRA 1QJPA 5TISO 4AKRA 4FSOA 1IZNB 1BH3A 5IYUA 2R4LA 5FVNA 3GP6A 5JDPA 4GCPA 2X27X 4FOZA 1QJ9A 2PFXA 2O4VA 4QQ1A 2ODJA 5B66O 5T5FA 2Y2XA 3HOLA 3NJTA 3DZMA 2R4PA 2N2LA 2R89A 2Y7SA 4RLBA 3HWBA 4CTDA 1PHOA 6PRNA 3BRZA 3C1LA 1HXTA 4AKRB 3PGSA 4UB8O 3UAQA 3QRAA 2XTRA 4D5UA 3QRCA 1T1LA 2M06A 4BUMX 2F1VA 3NSGA 4K3BA 3PORA 3AA6A 4FZNA 3AA7A 1BT9A 5D5DA 2ZFGA 2K4TA 4GCSA 5KAFO 4FUVA 4FSPA 4O4XA 2R88A 4AFKA 1THQA 3SY7A 5E79O 5GTHO 4N58A 1G90A 1VKEA 3A0HO 2R8AA 3VY8X 2R4NA 4LSIA 1QJ8A 3RBHA 2FGRA 1KNCA 2KDYA 1PRNA 1ZHYA 4N74A 4K3CA 5AFUL 3KZIO 1ZHTA 4RJWA 3SZVA 4C00A 5DL8A 1HXUA 3LK42 4UB6O 2YPVA 4FZLA 3HW9A 4FT6A 1T16A 4KRAA 3T24A 3TZGA 4XNKA 3AA6B 3AA7B 4LSFA 4AYEC 2OMFA 5G26A 1BXWA 4FQEA 4O49A 1ORMA 5EE2A 2W81C 4AYNA 1GFNA 1P4TA 4FZMA 2ES9A 1S5LO 2PRNA 1HXXA 2OUWA 3SZDA 5GTIO 1GFQA 3PQUA 4RLCA 4RJXA 3JCUO 3LK41 4E1TA 4G9QA 2O4DA 4RL9A 2GMYA 5H2FO 5ADXK 4XNLA 2PORA 1OPFA 2CWQA 3POQA
chains in the Genus database with same CATH topology
2MNHA 4BUMX 4Z3TA 2Q0TA 2F1VA 3NSGA 3SYBA 3SZVA 1MPFA 3FYXA 3PORA 2QTKA 1IZNA 3A2SX 3AA6A 4FZNA 3AA7A 5ADXL 3LK2A 4O3WA 1BT9A 3BEYA 4G76A 5D5DA 2XMXA 2ZFGA 3PQSA 1LW1A 2K4TA 4G75A 4GHBA 5PRNA 4GCSA 4N59A 4D64A 2KZ7A 4AZLA 4FMSA 4FUVA 2F1TA 3JTYA 2J4UP 3T20A 4FSPA 2IJCA 1ME5A 4O4XA 3KVDD 2KXPB 5AFUK 2XE3A 3V8UA 3VZUX 2K0LA 3AA0A 1MM5A 4AFKA 7PRNA 3DA3A 1THQA 3VE1A 3SY7A 1MM4A 4O3ZA 2XE5A 3K19A 2Y0LA 4N58A 2QEUA 1G90A 1VKEA 4JFBA 3VY9X 2M07A 3HOEA 3AA1B 4O3XB 2N2MA 3PRNA 3SY9A 5DIPA 3C5OA 3LK3A 3VY8X 1Q9FA 4LSIA 1QJ8A 3RBHA 2FGRA 1KNCA 3SYSA 2KDYA 1P8CA 2XE2A 3WI5A 4GCQA 4B61A 2PRRA 1PRNA 2ERVA 2W80C 1ZHYA 2XE1A 4LSHA 1YS5A 5AFUL 2LHFA 3UPGA 3EMNX 1ZHTA 1Q9GA 3DA4A 3AAEA 1GFPA 1H6S1 4FESA 2KC0A 4KR8A 4JCHA 4RJWA 5DL6A 5DL7A 3AAAB 5DL8A 1QJPA 3VE2A 1HXUA 3LK42 4AKRA 2YPVA 4FZLA 3HW9A 4FT6A 4KRAA 4FSOA 3T24A 3TZGA 4D65A 1IZNB 1BH3A 4XNKA 5IYUA 3AA6B 5GV0A 5FVNA 3AA7B 4PUXA 3LK2B 4LSFA 2LFUA 3GP6A 1ZHWA 4AYEC 5JDPA 2YNKA 3WI4A 4GCPA 2KZ7B 2OMFA 5G26A 1BXWA 2X27X 2AF7A 4FOZA 1ORMA 4O49A 1QJ9A 2PFXA 5EE2A 2O4VA 2MHLA 4QQ1A 2ODJA 2W81C 8PRNA 2FGQX 4F4BA 4AYNA 1GFNA 1GFOA 1P4TA 5T5FA 2JN8A 5DIKA 2JMMA 2Y2XA 3AA0B 4FZMA 3HOLA 2ES9A 2PRNA 3UU2A 1HXXA 2OUWA 4AYID 4C69X 3D7IA 1ZHZA 4O3YA 3SZDA 3VZWX 3T0SA 2Y0KA 1GFQA 4FRTA 2Y0HA 3PQUA 1GFMA 2GE4A 3LK3B 2KXPA 4RLCA 3POXA 4FRXA 4RJXA 2OYOA 4GF4A 1ZHXA 2N2LA 2Y7SA 4AYMC 1OSMA 4RLBA 4AUIA 3HWBA 3LK41 4E1TA 1GU9A 4G9QA 2O4DA 4LSEA 3AAEB 1PHOA 3POUA 3G7GA 1E54A 4KR4A 3VZTX 4AKMA 6PRNA 3AA1A 2J1NA 4RL9A 2GMYA 3C1LA 5ADXK 1HXTA 4AKRB 3LVYA 4XNLA 4E1SA 2XG6A 3UAQA 4O4UA 2ZLDA 3O0EA 3QRAA 2XTRA 4U9CA 2PORA 4D5UA 5DL5A 3QRCA 1OPFA 2M06A 4AYDC 2CWQA 2XTQA 3AAAA 3POQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AA6 B;  3AA7 B;  3LK2 B;  3AA1 B;  3LK3 A;  1IZN A;  3LK4 1;  2KZ7 B;  3AA6 A;  3AA7 A;  5ADX L;  3AAE B;  3LK2 A;  3AA1 A;  5ADX K;  5AFU L;  2KZ7 A;  4AKR B;  3AA0 B;  3AAE A;  2KXP B;  3AAA B;  5AFU K;  3LK4 2;  4AKR A;  3AA0 A;  2KXP A;  3LK3 B;  1IZN B;  3AAA A; 
#chains in the Genus database with same CATH topology
 2MNH A;  3FYX A;  3PQS A;  5PRN A;  4D64 A;  2KZ7 A;  4AZL A;  3BRY A;  2J4U P;  5B5E O;  2IJC A;  2K0L A;  3AA0 A;  2R4O A;  3VE1 A;  4O3Z A;  2Y0L A;  2QEU A;  2M07 A;  3PRN A;  3SYS A;  2XE2 A;  4GCQ A;  2XE1 A;  3DA4 A;  3AAE A;  1H6S 1;  4AYM C;  4JCH A;  3VE2 A;  3PGU A;  2WJQ A;  3PF1 A;  2LFU A;  3DWN A;  2YNK A;  2KZ7 B;  2AF7 A;  2MHL A;  1GFO A;  5DIK A;  3AA0 B;  4AYI D;  4C69 X;  5G38 A;  3D7I A;  1ZHZ A;  4O3Y A;  3VZW X;  3T0S A;  2Y0H A;  2KXP A;  3POX A;  2OYO A;  1OSM A;  4AUI A;  1GU9 A;  4LSE A;  3AAE B;  3POU A;  3G7G A;  1E54 A;  3VZT X;  2J1N A;  3LVY A;  2WJR A;  4E1S A;  2XG6 A;  4O4U A;  3O0E A;  2F1C X;  4U9C A;  4PUX A;  4Z3T A;  2QTK A;  3A2S X;  3LK2 A;  4O3W A;  4G76 A;  3BEY A;  2XMX A;  1LW1 A;  2F1T A;  3JTY A;  3KVD D;  2KXP B;  5AFU K;  1MM5 A;  5KAI O;  2XE5 A;  3K19 A;  3DWO X;  4O3X B;  2N2M A;  3LK3 A;  1Q9F A;  3A0B O;  2WVP A;  4B61 A;  2PRR A;  3WU2 O;  4LSH A;  3UPG A;  3EMN X;  1Q9G A;  2KC0 A;  4KR8 A;  5DL7 A;  4D65 A;  5GV0 A;  3LK2 B;  5G3A A;  1ZHW A;  3WI4 A;  8PRN A;  2FGQ X;  4F4B A;  2JN8 A;  2JMM A;  3UU2 A;  2IWW A;  2Y0K A;  4FRT A;  1GFM A;  2GE4 A;  3LK3 B;  4FRX A;  4GF4 A;  1ZHX A;  2IWV A;  4N75 A;  4PJ0 O;  2X9K A;  4AKM A;  4KR4 A;  3AA1 A;  4PR7 A;  2ZLD A;  5DL5 A;  4C4V A;  4AYD C;  2XTQ A;  3AAA A;  3BS0 A;  2Q0T A;  3SYB A;  1MPF A;  1IZN A;  5ADX L;  4G75 A;  4GHB A;  4N59 A;  4FMS A;  3T20 A;  1ME5 A;  2XE3 A;  3V8U A;  3VZU X;  7PRN A;  3DA3 A;  1MM4 A;  4JFB A;  3VY9 X;  3HOE A;  5G39 A;  3AA1 B;  2AXT O;  3SY9 A;  5DIP A;  4IL6 O;  3C5O A;  1P8C A;  3WI5 A;  2ERV A;  2W80 C;  1YS5 A;  2JQY A;  2LHF A;  4C4V B;  1GFP A;  4FES A;  5DL6 A;  3AAA B;  3PGR A;  1QJP A;  5TIS O;  4AKR A;  4FSO A;  1IZN B;  1BH3 A;  5IYU A;  2R4L A;  5FVN A;  3GP6 A;  5JDP A;  4GCP A;  2X27 X;  4FOZ A;  1QJ9 A;  2PFX A;  2O4V A;  4QQ1 A;  2ODJ A;  5B66 O;  5T5F A;  2Y2X A;  3HOL A;  3NJT A;  3DZM A;  2R4P A;  2N2L A;  2R89 A;  2Y7S A;  4RLB A;  3HWB A;  4CTD A;  1PHO A;  6PRN A;  3BRZ A;  3C1L A;  1HXT A;  4AKR B;  3PGS A;  4UB8 O;  3UAQ A;  3QRA A;  2XTR A;  4D5U A;  3QRC A;  1T1L A;  2M06 A;  4BUM X;  2F1V A;  3NSG A;  4K3B A;  3POR A;  3AA6 A;  4FZN A;  3AA7 A;  1BT9 A;  5D5D A;  2ZFG A;  2K4T A;  4GCS A;  5KAF O;  4FUV A;  4FSP A;  4O4X A;  2R88 A;  4AFK A;  1THQ A;  3SY7 A;  5E79 O;  5GTH O;  4N58 A;  1G90 A;  1VKE A;  3A0H O;  2R8A A;  3VY8 X;  2R4N A;  4LSI A;  1QJ8 A;  3RBH A;  2FGR A;  1KNC A;  2KDY A;  1PRN A;  1ZHY A;  4N74 A;  4K3C A;  5AFU L;  3KZI O;  1ZHT A;  4RJW A;  3SZV A;  4C00 A;  5DL8 A;  1HXU A;  3LK4 2;  4UB6 O;  2YPV A;  4FZL A;  3HW9 A;  4FT6 A;  1T16 A;  4KRA A;  3T24 A;  3TZG A;  4XNK A;  3AA6 B;  3AA7 B;  4LSF A;  4AYE C;  2OMF A;  5G26 A;  1BXW A;  4FQE A;  4O49 A;  1ORM A;  5EE2 A;  2W81 C;  4AYN A;  1GFN A;  1P4T A;  4FZM A;  2ES9 A;  1S5L O;  2PRN A;  1HXX A;  2OUW A;  3SZD A;  5GTI O;  1GFQ A;  3PQU A;  4RLC A;  4RJX A;  3JCU O;  3LK4 1;  4E1T A;  4G9Q A;  2O4D A;  4RL9 A;  2GMY A;  5H2F O;  5ADX K;  4XNL A;  2POR A;  1OPF A;  2CWQ A;  3POQ A; 
#chains in the Genus database with same CATH homology
 2MNH A;  4BUM X;  4Z3T A;  2Q0T A;  2F1V A;  3NSG A;  3SYB A;  3SZV A;  1MPF A;  3FYX A;  3POR A;  2QTK A;  1IZN A;  3A2S X;  3AA6 A;  4FZN A;  3AA7 A;  5ADX L;  3LK2 A;  4O3W A;  1BT9 A;  3BEY A;  4G76 A;  5D5D A;  2XMX A;  2ZFG A;  3PQS A;  1LW1 A;  2K4T A;  4G75 A;  4GHB A;  5PRN A;  4GCS A;  4N59 A;  4D64 A;  2KZ7 A;  4AZL A;  4FMS A;  4FUV A;  2F1T A;  3JTY A;  2J4U P;  3T20 A;  4FSP A;  2IJC A;  1ME5 A;  4O4X A;  3KVD D;  2KXP B;  5AFU K;  2XE3 A;  3V8U A;  3VZU X;  2K0L A;  3AA0 A;  1MM5 A;  4AFK A;  7PRN A;  3DA3 A;  1THQ A;  3VE1 A;  3SY7 A;  1MM4 A;  4O3Z A;  2XE5 A;  3K19 A;  2Y0L A;  4N58 A;  2QEU A;  1G90 A;  1VKE A;  4JFB A;  3VY9 X;  2M07 A;  3HOE A;  3AA1 B;  4O3X B;  2N2M A;  3PRN A;  3SY9 A;  5DIP A;  3C5O A;  3LK3 A;  3VY8 X;  1Q9F A;  4LSI A;  1QJ8 A;  3RBH A;  2FGR A;  1KNC A;  3SYS A;  2KDY A;  1P8C A;  2XE2 A;  3WI5 A;  4GCQ A;  4B61 A;  2PRR A;  1PRN A;  2ERV A;  2W80 C;  1ZHY A;  2XE1 A;  4LSH A;  1YS5 A;  5AFU L;  2LHF A;  3UPG A;  3EMN X;  1ZHT A;  1Q9G A;  3DA4 A;  3AAE A;  1GFP A;  1H6S 1;  4FES A;  2KC0 A;  4KR8 A;  4JCH A;  4RJW A;  5DL6 A;  5DL7 A;  3AAA B;  5DL8 A;  1QJP A;  3VE2 A;  1HXU A;  3LK4 2;  4AKR A;  2YPV A;  4FZL A;  3HW9 A;  4FT6 A;  4KRA A;  4FSO A;  3T24 A;  3TZG A;  4D65 A;  1IZN B;  1BH3 A;  4XNK A;  5IYU A;  3AA6 B;  5GV0 A;  5FVN A;  3AA7 B;  4PUX A;  3LK2 B;  4LSF A;  2LFU A;  3GP6 A;  1ZHW A;  4AYE C;  5JDP A;  2YNK A;  3WI4 A;  4GCP A;  2KZ7 B;  2OMF A;  5G26 A;  1BXW A;  2X27 X;  2AF7 A;  4FOZ A;  1ORM A;  4O49 A;  1QJ9 A;  2PFX A;  5EE2 A;  2O4V A;  2MHL A;  4QQ1 A;  2ODJ A;  2W81 C;  8PRN A;  2FGQ X;  4F4B A;  4AYN A;  1GFN A;  1GFO A;  1P4T A;  5T5F A;  2JN8 A;  5DIK A;  2JMM A;  2Y2X A;  3AA0 B;  4FZM A;  3HOL A;  2ES9 A;  2PRN A;  3UU2 A;  1HXX A;  2OUW A;  4AYI D;  4C69 X;  3D7I A;  1ZHZ A;  4O3Y A;  3SZD A;  3VZW X;  3T0S A;  2Y0K A;  1GFQ A;  4FRT A;  2Y0H A;  3PQU A;  1GFM A;  2GE4 A;  3LK3 B;  2KXP A;  4RLC A;  3POX A;  4FRX A;  4RJX A;  2OYO A;  4GF4 A;  1ZHX A;  2N2L A;  2Y7S A;  4AYM C;  1OSM A;  4RLB A;  4AUI A;  3HWB A;  3LK4 1;  4E1T A;  1GU9 A;  4G9Q A;  2O4D A;  4LSE A;  3AAE B;  1PHO A;  3POU A;  3G7G A;  1E54 A;  4KR4 A;  3VZT X;  4AKM A;  6PRN A;  3AA1 A;  2J1N A;  4RL9 A;  2GMY A;  3C1L A;  5ADX K;  1HXT A;  4AKR B;  3LVY A;  4XNL A;  4E1S A;  2XG6 A;  3UAQ A;  4O4U A;  2ZLD A;  3O0E A;  3QRA A;  2XTR A;  4U9C A;  2POR A;  4D5U A;  5DL5 A;  3QRC A;  1OPF A;  2M06 A;  4AYD C;  2CWQ A;  2XTQ A;  3AAA A;  3POQ A; 
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