3LK41

Crystal structure of capz bound to the uncapping motif from cd2ap
Total Genus 85

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
269
structure length
269
Chain Sequence
VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (10-22)AH3 (43-61)S7 (151-164)S9 (185-198)EMPTYTII1 (25-28)AH2 (28-40)TI1 (90-93)S1 (64-66)AH4 (117-135)TII2 (67-70)S2 (73-75)TIV3 (136-139)S8 (169-182)3H1 (78-80)TIV1 (89-92)TIV2 (99-102)S3 (86-89)TI'1 (83-86)S5 (104-110)S4 (94-99)TIV4 (147-150)S6 (139-148)3H2 (165-167)TVIa1 (182-185)AH5 (221-258)S10 (204-217)TIV6 (199-202)TVIII1 (260-263)TI3 (263-266)Updating...
connected with : NaN
molecule tags Protein binding
source organism Gallus gallus
publication title Structural characterization of a capping protein interaction motif defines a family of actin filament regulators
doi rcsb
molecule keywords F-actin-capping protein subunit alpha-1
total genus 85
structure length 269
sequence length 269
chains with identical sequence 4, 7, A, D, G, J, M, P, S, V, Y
ec nomenclature
pdb deposition date 2010-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
1 PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3lk4101
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3lk4102
3AA7B 3AA7A 3LK3B 3LK3A 3LK2B 3LK2A 3AA6B 3AA6A 3AAAA 5ADXK 3AAAB 5AFUL 1IZNB 4AKRA 1IZNA 3AA0A 4AKRB 3AA0B 2KZ7B 2KZ7A 3AA1A 3AA1B 5AFUK 3LK41 3AAEB 3AAEA 3LK42 2KXPB 2KXPA 5ADXL
chains in the Genus database with same CATH superfamily
3UU2A 5G26A 2W81C 3NJTA 2O4DA 7PRNA 3PGRA 4AKRA 2LHFA 3JTYA 4PUXA 4AKMA 1S5LO 4GCPA 1ZHWA 3C1LA 1P4TA 3SY9A 4AUIA 4LSEA 4G75A 2ZLDA 2ES9A 3DA3A 5G38A 4FRXA 4E1SA 5JDPA 1HXXA 5B66O 3KZIO 1T1LA 4GF4A 4FT6A 3AA1B 3AAEA 2WJQA 4JFBA 4RL9A 3O0EA 4O49A 2R8AA 2Q0TA 1BXWA 2IWVA 1HXUA 3A0HO 3V8UA 3WU2O 2XE2A 2WVPA 2XE5A 4IL6O 4FUVA 5D5DA 4UB8O 2K0LA 2QTKA 4KR8A 1YS5A 4N75A 1BT9A 1QJ9A 4FSOA 2OUWA 3SZVA 3POQA 3POUA 1GFNA 4AKRB 1Q9FA 2MNHA 4FESA 1PRNA 4U9CA 4AYDC 4AZLA 2Y2XA 2R4NA 4C69X 2KXPB 4PJ0O 2X27X 4FSPA 3GP6A 4O4XA 2QEUA 2XMXA 4FZNA 4O3YA 3BEYA 1HXTA 5FVNA 2PFXA 1MM5A 3A0BO 3VZWX 3VE1A 3BS0A 2XE1A 1ZHYA 2F1TA 1KNCA 3WI4A 3AA6B 4QQ1A 1GFOA 1MM4A 3SYBA 3POXA 1ZHTA 3LK42 5E79O 4LSIA 2KXPA 3PRNA 1LW1A 2IWWA 4RJWA 3DA4A 4AYNA 4G9QA 3SY7A 4AYEC 3A2SX 5T5FA 3FYXA 1ZHXA 1PHOA 3HWBA 3EMNX 4FQEA 1P8CA 2R88A 5G3AA 2OMFA 5IYUA 5KAIO 3T20A 4FMSA 4D5UA 3AA6A 4RLCA 1GFMA 3VY9X 1QJ8A 4K3CA 4FZMA 2Y7SA 3LK41 3PORA 3PQSA 1GFQA 2JQYA 2XE3A 5KAFO 2JMMA 4K3BA 4N74A 1OSMA 4D64A 4O3ZA 8PRNA 3LK2B 2XTQA 3AAAB 2GMYA 4KRAA 3AA0A 2O4VA 2Y0KA 2KZ7B 3BRYA 3SYSA 5AFUK 2R4OA 2X9KA 1GU9A 5GTIO 4AFKA 2J1NA 4GCQA 2K4TA 5H2FO 5AFUL 4RJXA 1IZNB 4JCHA 2FGQX 3G7GA 3TZGA 1H6S1 4XNLA 1THQA 2J4UP 2PRNA 2AXTO 2W80C 5TISO 3AA7B 5G39A 2N2MA 3LK2A 3AAAA 4D65A 4C4VB 2KZ7A 3VZUX 2PORA 2N2LA 3SZDA 2Y0LA 2R4LA 4FRTA 3DWOX 2GE4A 4RLBA 4GCSA 2M07A 5PRNA 2ZFGA 3PGSA 2YNKA 3WI5A 2M06A 2ODJA 2JN8A 2WJRA 1QJPA 2YPVA 5DIKA 4E1TA 4AYMC 3T0SA 1IZNA 3AA0B 4G76A 3QRAA 4Z3TA 3PF1A 4KR4A 2CWQA 1ME5A 4LSHA 3AA7A 4O3XB 3LK3B 5GTHO 5DL7A 3VZTX 4PR7A 5DL5A 3UPGA 2FGRA 4BUMX 3T24A 4LSFA 2MHLA 4C4VA 4N59A 4AYID 2KDYA 2IJCA 3PQUA 4CTDA 4O4UA 2LFUA 3C5OA 5GV0A 2XTRA 3LVYA 3DWNA 1MPFA 4FOZA 4UB6O 5B5EO 2Y0HA 5ADXK 3D7IA 3JCUO 2F1VA 1ZHZA 1ORMA 2KC0A 4F4BA 5DL6A 2AF7A 4FZLA 3NSGA 3HOLA 2F1CX 3UAQA 3HOEA 5ADXL 2OYOA 1G90A 6PRNA 3DZMA 1T16A 3LK3A 4GHBA 4O3WA 4XNKA 3RBHA 1VKEA 5DL8A 4B61A 3PGUA 4N58A 3KVDD 5DIPA 3AA1A 2R4PA 1OPFA 1GFPA 2XG6A 4C00A 3VY8X 1E54A 1Q9GA 2R89A 3HW9A 3BRZA 3QRCA 1BH3A 2ERVA 3AAEB 3K19A 5EE2A 2PRRA 3VE2A
chains in the Genus database with same CATH topology
2JMMA 3UU2A 3AA7A 4O3XB 5G26A 1OSMA 2W81C 4D64A 3LK3B 4O3ZA 4FSPA 2O4DA 8PRNA 3GP6A 5DL7A 7PRNA 4O4XA 3VZTX 2QEUA 2XTQA 3AAAB 3LK2B 5DL5A 3UPGA 2XMXA 2FGRA 4FZNA 4O3YA 4BUMX 2GMYA 4AKRA 2LHFA 4KRAA 3BEYA 3AA0A 2O4VA 2XE3A 3T24A 4LSFA 1HXTA 2MHLA 5FVNA 2PFXA 2Y0KA 4N59A 1MM5A 2KZ7B 3JTYA 4LSHA 4AYID 2KDYA 2IJCA 4PUXA 3SYSA 5AFUK 3PQUA 3VZWX 4AKMA 4O4UA 4GCPA 2LFUA 3C5OA 5GV0A 3VE1A 2XTRA 3LVYA 1GU9A 1ZHWA 3C1LA 1P4TA 2XE1A 3SY9A 4AFKA 4AUIA 1ZHYA 1MPFA 4FOZA 4LSEA 2J1NA 2F1TA 1KNCA 4G75A 4GCQA 2ZLDA 2Y0HA 3WI4A 2ES9A 2K4TA 5ADXK 3AA6B 3D7IA 3DA3A 4QQ1A 5AFUL 4FRXA 1GFOA 2F1VA 4RJXA 1ZHZA 1IZNB 1ORMA 4E1SA 2KC0A 5JDPA 1MM4A 4F4BA 1HXXA 4JCHA 5DL6A 2FGQX 3SYBA 2AF7A 3G7GA 3POXA 4GF4A 3TZGA 4FT6A 1H6S1 3AA1B 4FZLA 3NSGA 1ZHTA 3AAEA 3HOLA 4JFBA 4XNLA 4RL9A 1THQA 3LK42 3O0EA 2J4UP 2PRNA 3UAQA 3HOEA 4LSIA 2KXPA 3PRNA 5ADXL 1LW1A 2W80C 2OYOA 1G90A 3AA7B 4O49A 4RJWA 2Q0TA 6PRNA 1BXWA 3DA4A 4AYNA 3LK3A 4G9QA 1HXUA 4GHBA 2N2MA 4O3WA 4XNKA 3SY7A 3RBHA 1VKEA 3LK2A 3A2SX 3AAAA 5DL8A 3V8UA 4AYEC 4B61A 2XE2A 2XE5A 5T5FA 3FYXA 4D65A 4FUVA 5D5DA 1ZHXA 1PHOA 4N58A 3KVDD 3HWBA 2K0LA 3EMNX 2KZ7A 5DIPA 3AA1A 2PORA 3VZUX 2N2LA 3SZDA 2Y0LA 4FRTA 1P8CA 2QTKA 2GE4A 4KR8A 1OPFA 4RLBA 1YS5A 2M07A 4GCSA 2OMFA 5PRNA 1GFPA 2XG6A 1BT9A 2ZFGA 2YNKA 1QJ9A 3WI5A 2M06A 5IYUA 3T20A 2ODJA 4FMSA 3VY8X 4D5UA 2JN8A 1E54A 1QJPA 2YPVA 5DIKA 4FSOA 1Q9GA 4E1TA 2OUWA 3SZVA 3AA6A 3POQA 1GFNA 3POUA 4RLCA 4AYMC 3HW9A 3T0SA 1GFMA 1IZNA 3VY9X 4AKRB 1Q9FA 2MNHA 1QJ8A 3QRCA 3AA0B 4FESA 1BH3A 1PRNA 4U9CA 4G76A 4FZMA 2ERVA 4AYDC 3QRAA 4AZLA 2Y7SA 3LK41 3AAEB 2Y2XA 4Z3TA 3PORA 4KR4A 3K19A 2CWQA 3PQSA 1ME5A 1GFQA 5EE2A 4C69X 2PRRA 2KXPB 3VE2A 2X27X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AA7 B;  3AA7 A;  3LK3 B;  3LK3 A;  3LK2 B;  3LK2 A;  3AA6 B;  3AA6 A;  3AAA A;  5ADX K;  3AAA B;  5AFU L;  1IZN B;  4AKR A;  1IZN A;  3AA0 A;  4AKR B;  3AA0 B;  2KZ7 B;  2KZ7 A;  3AA1 A;  3AA1 B;  5AFU K;  3LK4 1;  3AAE B;  3AAE A;  3LK4 2;  2KXP B;  2KXP A;  5ADX L; 
#chains in the Genus database with same CATH topology
 3UU2 A;  5G26 A;  2W81 C;  3NJT A;  2O4D A;  7PRN A;  3PGR A;  4AKR A;  2LHF A;  3JTY A;  4PUX A;  4AKM A;  1S5L O;  4GCP A;  1ZHW A;  3C1L A;  1P4T A;  3SY9 A;  4AUI A;  4LSE A;  4G75 A;  2ZLD A;  2ES9 A;  3DA3 A;  5G38 A;  4FRX A;  4E1S A;  5JDP A;  1HXX A;  5B66 O;  3KZI O;  1T1L A;  4GF4 A;  4FT6 A;  3AA1 B;  3AAE A;  2WJQ A;  4JFB A;  4RL9 A;  3O0E A;  4O49 A;  2R8A A;  2Q0T A;  1BXW A;  2IWV A;  1HXU A;  3A0H O;  3V8U A;  3WU2 O;  2XE2 A;  2WVP A;  2XE5 A;  4IL6 O;  4FUV A;  5D5D A;  4UB8 O;  2K0L A;  2QTK A;  4KR8 A;  1YS5 A;  4N75 A;  1BT9 A;  1QJ9 A;  4FSO A;  2OUW A;  3SZV A;  3POQ A;  3POU A;  1GFN A;  4AKR B;  1Q9F A;  2MNH A;  4FES A;  1PRN A;  4U9C A;  4AYD C;  4AZL A;  2Y2X A;  2R4N A;  4C69 X;  2KXP B;  4PJ0 O;  2X27 X;  4FSP A;  3GP6 A;  4O4X A;  2QEU A;  2XMX A;  4FZN A;  4O3Y A;  3BEY A;  1HXT A;  5FVN A;  2PFX A;  1MM5 A;  3A0B O;  3VZW X;  3VE1 A;  3BS0 A;  2XE1 A;  1ZHY A;  2F1T A;  1KNC A;  3WI4 A;  3AA6 B;  4QQ1 A;  1GFO A;  1MM4 A;  3SYB A;  3POX A;  1ZHT A;  3LK4 2;  5E79 O;  4LSI A;  2KXP A;  3PRN A;  1LW1 A;  2IWW A;  4RJW A;  3DA4 A;  4AYN A;  4G9Q A;  3SY7 A;  4AYE C;  3A2S X;  5T5F A;  3FYX A;  1ZHX A;  1PHO A;  3HWB A;  3EMN X;  4FQE A;  1P8C A;  2R88 A;  5G3A A;  2OMF A;  5IYU A;  5KAI O;  3T20 A;  4FMS A;  4D5U A;  3AA6 A;  4RLC A;  1GFM A;  3VY9 X;  1QJ8 A;  4K3C A;  4FZM A;  2Y7S A;  3LK4 1;  3POR A;  3PQS A;  1GFQ A;  2JQY A;  2XE3 A;  5KAF O;  2JMM A;  4K3B A;  4N74 A;  1OSM A;  4D64 A;  4O3Z A;  8PRN A;  3LK2 B;  2XTQ A;  3AAA B;  2GMY A;  4KRA A;  3AA0 A;  2O4V A;  2Y0K A;  2KZ7 B;  3BRY A;  3SYS A;  5AFU K;  2R4O A;  2X9K A;  1GU9 A;  5GTI O;  4AFK A;  2J1N A;  4GCQ A;  2K4T A;  5H2F O;  5AFU L;  4RJX A;  1IZN B;  4JCH A;  2FGQ X;  3G7G A;  3TZG A;  1H6S 1;  4XNL A;  1THQ A;  2J4U P;  2PRN A;  2AXT O;  2W80 C;  5TIS O;  3AA7 B;  5G39 A;  2N2M A;  3LK2 A;  3AAA A;  4D65 A;  4C4V B;  2KZ7 A;  3VZU X;  2POR A;  2N2L A;  3SZD A;  2Y0L A;  2R4L A;  4FRT A;  3DWO X;  2GE4 A;  4RLB A;  4GCS A;  2M07 A;  5PRN A;  2ZFG A;  3PGS A;  2YNK A;  3WI5 A;  2M06 A;  2ODJ A;  2JN8 A;  2WJR A;  1QJP A;  2YPV A;  5DIK A;  4E1T A;  4AYM C;  3T0S A;  1IZN A;  3AA0 B;  4G76 A;  3QRA A;  4Z3T A;  3PF1 A;  4KR4 A;  2CWQ A;  1ME5 A;  4LSH A;  3AA7 A;  4O3X B;  3LK3 B;  5GTH O;  5DL7 A;  3VZT X;  4PR7 A;  5DL5 A;  3UPG A;  2FGR A;  4BUM X;  3T24 A;  4LSF A;  2MHL A;  4C4V A;  4N59 A;  4AYI D;  2KDY A;  2IJC A;  3PQU A;  4CTD A;  4O4U A;  2LFU A;  3C5O A;  5GV0 A;  2XTR A;  3LVY A;  3DWN A;  1MPF A;  4FOZ A;  4UB6 O;  5B5E O;  2Y0H A;  5ADX K;  3D7I A;  3JCU O;  2F1V A;  1ZHZ A;  1ORM A;  2KC0 A;  4F4B A;  5DL6 A;  2AF7 A;  4FZL A;  3NSG A;  3HOL A;  2F1C X;  3UAQ A;  3HOE A;  5ADX L;  2OYO A;  1G90 A;  6PRN A;  3DZM A;  1T16 A;  3LK3 A;  4GHB A;  4O3W A;  4XNK A;  3RBH A;  1VKE A;  5DL8 A;  4B61 A;  3PGU A;  4N58 A;  3KVD D;  5DIP A;  3AA1 A;  2R4P A;  1OPF A;  1GFP A;  2XG6 A;  4C00 A;  3VY8 X;  1E54 A;  1Q9G A;  2R89 A;  3HW9 A;  3BRZ A;  3QRC A;  1BH3 A;  2ERV A;  3AAE B;  3K19 A;  5EE2 A;  2PRR A;  3VE2 A; 
#chains in the Genus database with same CATH homology
 2JMM A;  3UU2 A;  3AA7 A;  4O3X B;  5G26 A;  1OSM A;  2W81 C;  4D64 A;  3LK3 B;  4O3Z A;  4FSP A;  2O4D A;  8PRN A;  3GP6 A;  5DL7 A;  7PRN A;  4O4X A;  3VZT X;  2QEU A;  2XTQ A;  3AAA B;  3LK2 B;  5DL5 A;  3UPG A;  2XMX A;  2FGR A;  4FZN A;  4O3Y A;  4BUM X;  2GMY A;  4AKR A;  2LHF A;  4KRA A;  3BEY A;  3AA0 A;  2O4V A;  2XE3 A;  3T24 A;  4LSF A;  1HXT A;  2MHL A;  5FVN A;  2PFX A;  2Y0K A;  4N59 A;  1MM5 A;  2KZ7 B;  3JTY A;  4LSH A;  4AYI D;  2KDY A;  2IJC A;  4PUX A;  3SYS A;  5AFU K;  3PQU A;  3VZW X;  4AKM A;  4O4U A;  4GCP A;  2LFU A;  3C5O A;  5GV0 A;  3VE1 A;  2XTR A;  3LVY A;  1GU9 A;  1ZHW A;  3C1L A;  1P4T A;  2XE1 A;  3SY9 A;  4AFK A;  4AUI A;  1ZHY A;  1MPF A;  4FOZ A;  4LSE A;  2J1N A;  2F1T A;  1KNC A;  4G75 A;  4GCQ A;  2ZLD A;  2Y0H A;  3WI4 A;  2ES9 A;  2K4T A;  5ADX K;  3AA6 B;  3D7I A;  3DA3 A;  4QQ1 A;  5AFU L;  4FRX A;  1GFO A;  2F1V A;  4RJX A;  1ZHZ A;  1IZN B;  1ORM A;  4E1S A;  2KC0 A;  5JDP A;  1MM4 A;  4F4B A;  1HXX A;  4JCH A;  5DL6 A;  2FGQ X;  3SYB A;  2AF7 A;  3G7G A;  3POX A;  4GF4 A;  3TZG A;  4FT6 A;  1H6S 1;  3AA1 B;  4FZL A;  3NSG A;  1ZHT A;  3AAE A;  3HOL A;  4JFB A;  4XNL A;  4RL9 A;  1THQ A;  3LK4 2;  3O0E A;  2J4U P;  2PRN A;  3UAQ A;  3HOE A;  4LSI A;  2KXP A;  3PRN A;  5ADX L;  1LW1 A;  2W80 C;  2OYO A;  1G90 A;  3AA7 B;  4O49 A;  4RJW A;  2Q0T A;  6PRN A;  1BXW A;  3DA4 A;  4AYN A;  3LK3 A;  4G9Q A;  1HXU A;  4GHB A;  2N2M A;  4O3W A;  4XNK A;  3SY7 A;  3RBH A;  1VKE A;  3LK2 A;  3A2S X;  3AAA A;  5DL8 A;  3V8U A;  4AYE C;  4B61 A;  2XE2 A;  2XE5 A;  5T5F A;  3FYX A;  4D65 A;  4FUV A;  5D5D A;  1ZHX A;  1PHO A;  4N58 A;  3KVD D;  3HWB A;  2K0L A;  3EMN X;  2KZ7 A;  5DIP A;  3AA1 A;  2POR A;  3VZU X;  2N2L A;  3SZD A;  2Y0L A;  4FRT A;  1P8C A;  2QTK A;  2GE4 A;  4KR8 A;  1OPF A;  4RLB A;  1YS5 A;  2M07 A;  4GCS A;  2OMF A;  5PRN A;  1GFP A;  2XG6 A;  1BT9 A;  2ZFG A;  2YNK A;  1QJ9 A;  3WI5 A;  2M06 A;  5IYU A;  3T20 A;  2ODJ A;  4FMS A;  3VY8 X;  4D5U A;  2JN8 A;  1E54 A;  1QJP A;  2YPV A;  5DIK A;  4FSO A;  1Q9G A;  4E1T A;  2OUW A;  3SZV A;  3AA6 A;  3POQ A;  1GFN A;  3POU A;  4RLC A;  4AYM C;  3HW9 A;  3T0S A;  1GFM A;  1IZN A;  3VY9 X;  4AKR B;  1Q9F A;  2MNH A;  1QJ8 A;  3QRC A;  3AA0 B;  4FES A;  1BH3 A;  1PRN A;  4U9C A;  4G76 A;  4FZM A;  2ERV A;  4AYD C;  3QRA A;  4AZL A;  2Y7S A;  3LK4 1;  3AAE B;  2Y2X A;  4Z3T A;  3POR A;  4KR4 A;  3K19 A;  2CWQ A;  3PQS A;  1ME5 A;  1GFQ A;  5EE2 A;  4C69 X;  2PRR A;  2KXP B;  3VE2 A;  2X27 X; 
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