The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
85
|
sequence length |
269
|
structure length |
269
|
Chain Sequence |
VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural characterization of a capping protein interaction motif defines a family of actin filament regulators
doi rcsb |
| molecule tags |
Protein binding
|
| source organism |
Gallus gallus
|
| molecule keywords |
F-actin-capping protein subunit alpha-1
|
| total genus |
85
|
| structure length |
269
|
| sequence length |
269
|
| chains with identical sequence |
4, 7, A, D, G, J, M, P, S, V, Y
|
| ec nomenclature | |
| pdb deposition date | 2010-01-27 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| 1 | PF01267 | F-actin_cap_A | F-actin capping protein alpha subunit |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | AhpD-like | AhpD-like | ||
| Mainly Beta | Beta Barrel | Porin | Porin |
#chains in the Genus database with same CATH superfamily 5AFU L; 3AAE B; 3LK2 A; 4AKR A; 2KXP B; 5ADX K; 3AA1 A; 1IZN A; 3AA0 A; 5ADX L; 3AAE A; 3AAA B; 2KXP A; 3AA6 B; 3LK3 B; 3LK4 2; 3AAA A; 3LK3 A; 2KZ7 B; 3AA6 A; 3LK4 1; 3AA7 B; 3LK2 B; 2KZ7 A; 4AKR B; 1IZN B; 3AA7 A; 5AFU K; 3AA1 B; 3AA0 B; #chains in the Genus database with same CATH topology 5FVN A; 4LSE A; 7PRN A; 2ZLD A; 3A2S X; 2XE1 A; 2ODJ A; 2N2L A; 2XE3 A; 1LW1 A; 4FT6 A; 4N75 A; 2OYO A; 4G9Q A; 1GFP A; 1OSM A; 3UPG A; 4GF4 A; 2PRR A; 2W80 C; 4FZN A; 3LVY A; 3V8U A; 3AA0 B; 2GE4 A; 2Y7S A; 5ADX K; 3QRC A; 1Q9F A; 4AKM A; 2N2M A; 4QQ1 A; 5T5F A; 4RL9 A; 3VY8 X; 2XTR A; 3JCU O; 4RLB A; 1GFQ A; 1ZHX A; 2R89 A; 4C4V B; 4D65 A; 1S5L O; 3SZV A; 4C69 X; 3NJT A; 4O4U A; 3AA7 A; 5AFU L; 3RBH A; 2JN8 A; 4AKR A; 5JDP A; 3BEY A; 3SY9 A; 2R88 A; 2OMF A; 3DA4 A; 1P4T A; 5EE2 A; 2Y2X A; 3WI4 A; 4XNL A; 4LSF A; 3BRZ A; 5DIP A; 3WU2 O; 4AYM C; 4UB8 O; 4AYD C; 2O4V A; 3DWO X; 3BS0 A; 4RJX A; 3VZT X; 2F1C X; 4E1S A; 2MNH A; 1GFO A; 4JCH A; 5G39 A; 2KC0 A; 3AA7 B; 4FSO A; 5PRN A; 4FZL A; 4AKR B; 8PRN A; 3A0H O; 4UB6 O; 2Q0T A; 3AAA B; 1PRN A; 2F1V A; 5E79 O; 4G76 A; 5B66 O; 3NSG A; 3LK4 1; 2ES9 A; 2QEU A; 3GP6 A; 4KR4 A; 1QJ8 A; 2JMM A; 3VE1 A; 1BXW A; 4FRT A; 2KDY A; 3AA1 A; 4GCP A; 5DL5 A; 2R4P A; 4GCS A; 2GMY A; 3BRY A; 5DIK A; 1ZHW A; 3LK3 A; 5DL7 A; 2Y0L A; 3POX A; 1GFM A; 4AYN A; 4C00 A; 1E54 A; 3A0B O; 2Y0K A; 3PGU A; 2XE2 A; 1IZN B; 3JTY A; 3SZD A; 3VY9 X; 2QTK A; 4E1T A; 2R4L A; 3DWN A; 4Z3T A; 3POU A; 3PQS A; 3LK4 2; 2WVP A; 1T16 A; 3FYX A; 1QJP A; 5KAF O; 2IWW A; 4O49 A; 3VE2 A; 4O3X B; 2X9K A; 3AA1 B; 4IL6 O; 2POR A; 3SYS A; 4N58 A; 3T0S A; 3WI5 A; 3LK3 B; 4D64 A; 3AAA A; 1OPF A; 3PGR A; 2KZ7 B; 2K4T A; 2PRN A; 3G7G A; 2K0L A; 5DL6 A; 5KAI O; 4D5U A; 4B61 A; 3VZU X; 3POR A; 1HXX A; 2X27 X; 3VZW X; 1ZHT A; 4K3C A; 2KXP A; 1QJ9 A; 1ZHY A; 2XG6 A; 4U9C A; 3KVD D; 3HW9 A; 6PRN A; 3C5O A; 3UAQ A; 5AFU K; 3AAE B; 2XE5 A; 1ME5 A; 5G3A A; 2YNK A; 3DA3 A; 1BT9 A; 5G38 A; 1IZN A; 3SYB A; 3T24 A; 2M06 A; 4N59 A; 4KR8 A; 3EMN X; 2WJQ A; 4XNK A; 2R4N A; 1HXU A; 2MHL A; 2KXP B; 2XTQ A; 4N74 A; 5GV0 A; 1MPF A; 2AXT O; 2OUW A; 4KRA A; 2WJR A; 1PHO A; 2IWV A; 4PJ0 O; 2KZ7 A; 4O3Z A; 5IYU A; 2M07 A; 3O0E A; 1HXT A; 4FMS A; 4PUX A; 1YS5 A; 2J4U P; 2W81 C; 3AA6 B; 4AFK A; 2J1N A; 3KZI O; 4FQE A; 3PRN A; 4AUI A; 4AYI D; 1KNC A; 1BH3 A; 3HWB A; 3TZG A; 2YPV A; 2FGR A; 4F4B A; 4G75 A; 3AAE A; 2ERV A; 3UU2 A; 1ZHZ A; 4GCQ A; 4FZM A; 1T1L A; 3C1L A; 3K19 A; 4BUM X; 2JQY A; 5H2F O; 4FUV A; 1MM5 A; 3PQU A; 4O3Y A; 2PFX A; 2AF7 A; 4RLC A; 2XMX A; 4RJW A; 4FRX A; 4FSP A; 2R8A A; 3D7I A; 4O4X A; 4CTD A; 4K3B A; 5GTI O; 1P8C A; 4LSH A; 3PF1 A; 4AYE C; 1Q9G A; 2ZFG A; 3PGS A; 2O4D A; 4FOZ A; 3LK2 A; 1GU9 A; 3T20 A; 4AZL A; 2CWQ A; 4LSI A; 2IJC A; 4O3W A; 3HOL A; 4JFB A; 2LFU A; 5D5D A; 3AA6 A; 2LHF A; 3POQ A; 3SY7 A; 1GFN A; 5B5E O; 1G90 A; 1MM4 A; 2Y0H A; 4FES A; 2F1T A; 3DZM A; 1ORM A; 3AA0 A; 1THQ A; 2R4O A; 5ADX L; 1H6S 1; 5GTH O; 3HOE A; 5G26 A; 2FGQ X; 5TIS O; 3QRA A; 4PR7 A; 4GHB A; 1VKE A; 3LK2 B; 5DL8 A; 4C4V A; #chains in the Genus database with same CATH homology 5FVN A; 4D5U A; 4LSE A; 4B61 A; 3VZU X; 3TZG A; 2YPV A; 2FGR A; 3POR A; 7PRN A; 1HXX A; 2X27 X; 3VZW X; 2ZLD A; 4F4B A; 4G75 A; 1ZHT A; 3A2S X; 2Q0T A; 3AAE A; 3AAA B; 2ERV A; 2KXP A; 1QJ9 A; 2XE1 A; 3UU2 A; 2ODJ A; 1ZHY A; 1ZHZ A; 4GCQ A; 1PRN A; 2F1V A; 4G76 A; 4FZM A; 2XG6 A; 4AKM A; 2N2L A; 2XE3 A; 3NSG A; 3C1L A; 1LW1 A; 3KVD D; 4FT6 A; 4U9C A; 2OYO A; 4G9Q A; 1GFP A; 1OSM A; 3LK4 1; 2ES9 A; 2QEU A; 3HW9 A; 3UPG A; 3K19 A; 4BUM X; 3GP6 A; 4GF4 A; 4KR4 A; 1QJ8 A; 2PRR A; 2W80 C; 2JMM A; 4FZN A; 6PRN A; 3C5O A; 3UAQ A; 3LVY A; 5AFU K; 3V8U A; 3AA0 B; 3AAE B; 2GE4 A; 2XE5 A; 1ME5 A; 4FUV A; 3VE1 A; 2Y7S A; 2YNK A; 1MM5 A; 3DA3 A; 5ADX K; 1BXW A; 1BT9 A; 1Q9F A; 2KDY A; 1IZN A; 3AA1 A; 2N2M A; 3PQU A; 3QRC A; 2PFX A; 4FRT A; 4GCP A; 4O3Y A; 3SYB A; 2AF7 A; 4RLC A; 5DL5 A; 3T24 A; 2XMX A; 2M06 A; 4GCS A; 4N59 A; 4QQ1 A; 2GMY A; 4RJW A; 5T5F A; 4RL9 A; 5DIK A; 3VY8 X; 4FRX A; 2XTR A; 4FSP A; 4KR8 A; 4RLB A; 3D7I A; 1ZHW A; 1GFQ A; 1ZHX A; 4O4X A; 3LK3 A; 5DL7 A; 2Y0L A; 3EMN X; 3POX A; 1GFM A; 1P8C A; 4D65 A; 4AYN A; 4LSH A; 1E54 A; 3SZV A; 4XNK A; 2Y0K A; 4AYE C; 4C69 X; 1Q9G A; 2ZFG A; 4O4U A; 2XE2 A; 1IZN B; 3AA7 A; 3JTY A; 2O4D A; 5AFU L; 1HXU A; 4FOZ A; 3RBH A; 3LK2 A; 2MHL A; 1GU9 A; 2JN8 A; 4AKR A; 2KXP B; 3BEY A; 3SY9 A; 3SZD A; 5JDP A; 3T20 A; 4AZL A; 2CWQ A; 2XTQ A; 4LSI A; 2IJC A; 5GV0 A; 1MPF A; 2QTK A; 4O3W A; 3HOL A; 3VY9 X; 4E1T A; 4Z3T A; 4JFB A; 2OMF A; 3DA4 A; 3POU A; 2OUW A; 1P4T A; 5EE2 A; 2LFU A; 2Y2X A; 3WI4 A; 5D5D A; 4XNL A; 3PQS A; 4LSF A; 3LK4 2; 4KRA A; 1PHO A; 3AA6 A; 5DIP A; 2LHF A; 3POQ A; 3SY7 A; 3FYX A; 1GFN A; 1QJP A; 4AYM C; 4O49 A; 1G90 A; 4AYD C; 2KZ7 A; 2O4V A; 4O3X B; 3VE2 A; 1MM4 A; 2Y0H A; 4O3Z A; 3AA1 B; 4FES A; 5IYU A; 2M07 A; 3O0E A; 2F1T A; 2POR A; 1ORM A; 3SYS A; 1HXT A; 4FMS A; 4N58 A; 3T0S A; 3AA0 A; 4PUX A; 1THQ A; 1YS5 A; 2J4U P; 5ADX L; 4RJX A; 3VZT X; 1H6S 1; 2W81 C; 3WI5 A; 3AA6 B; 3LK3 B; 4AFK A; 4E1S A; 2MNH A; 1GFO A; 2J1N A; 4D64 A; 4JCH A; 3AAA A; 1OPF A; 2KZ7 B; 2K4T A; 3PRN A; 4AUI A; 3HOE A; 5G26 A; 2PRN A; 2FGQ X; 2KC0 A; 3G7G A; 3AA7 B; 3QRA A; 8PRN A; 2K0L A; 4FSO A; 4GHB A; 1VKE A; 3LK2 B; 4FZL A; 5PRN A; 4AKR B; 4AYI D; 5DL8 A; 1KNC A; 1BH3 A; 5DL6 A; 3HWB A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
