4AKRA

Crystal structure of the cytoplasmic actin capping protein cap32_34 from dictyostelium discoideum
Total Genus 80

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
269
structure length
269
Chain Sequence
ASNQELVQIATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSVQTSKGSALITKEGEISNNEYLDPKNKQVITYDHIKQEVTGERSASGEIEQDIEQYRAAFDEEATKYCNEYYPNGVSAVYGTKVSEGIKITVCISTCIYKPNAFYSGRWRSVWTCTFKPGSGNVTSNGKVQVNVHYFEDGNVQLNTVTQKQTTSPSADAQSTAVNAFKAIGKAELNLHTALDNNYSTMGDTTFKALRRALPINRTKINWQKV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII1 (19-22)S8 (145-158)AH2 (22-32)TVIII1 (34-37)TI1 (36-39)TIV1 (37-40)AH3 (43-55)TIV2 (40-43)3H1 (70-72)S5 (86-91)S2 (64-67)S1 (58-61)S6 (96-102)TIV3 (73-76)S4 (78-81)3H2 (82-84)TI6 (92-95)TIV4 (103-106)3H3 (109-111)S7 (134-142)AH4 (112-129)TI7 (130-133)TI8 (142-145)3H4 (159-161)S10 (181-194)S9 (163-175)S11 (200-213)TIV6 (196-199)TIV5 (195-198)3H5 (250-253)TVIII2 (256-259)TI9 (259-262)TIV7 (266-269)TI3 (61-64)S3 (73-75)TI4 (75-78)TI5 (91-94)AH5 (217-248)TII2 (176-179)AH1 (4-17)Updating...
connected with : NaN
molecule tags Actin-binding protein
source organism Dictyostelium discoideum
publication title Conservation and Divergence between Cytoplasmic and Muscle-Specific Actin Capping Proteins: Insights from the Crystal Structure of Cytoplasmic CAP32/34 from Dictyostelium Discoideum.
pubmed doi rcsb
molecule keywords F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA
total genus 80
structure length 269
sequence length 269
chains with identical sequence C
ec nomenclature
pdb deposition date 2012-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 4akrA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 4akrA02
3AA6B 3AAEB 3AA1A 3LK3A 3AA7B 3LK2B 3LK41 5AFUK 3AA6A 2KZ7B 3AAAB 3AAEA 3AA7A 5ADXK 3AA0B 3LK42 3LK2A 3AAAA 2KZ7A 1IZNB 3AA0A 1IZNA 5AFUL 4AKRB 2KXPB 5ADXL 4AKRA 3AA1B 3LK3B 2KXPA
chains in the Genus database with same CATH superfamily
2Y0KA 3PORA 7PRNA 2J1NA 4Z3TA 1QJ9A 2CWQA 5ADXK 1MM4A 3T0SA 1ZHXA 4AKRB 2WJQA 1OPFA 4E1TA 1GFNA 2PRNA 2XE2A 1HXTA 3SZDA 4FESA 2R89A 2W81C 4K3CA 1QJPA 5H2FO 3POUA 4G9QA 3AAAA 3AA0A 3K19A 3BEYA 1THQA 2M06A 4PUXA 3UU2A 2JN8A 2QTKA 4E1SA 4JFBA 5AFUK 3C1LA 3AA7A 3PQSA 3POQA 5TISO 3SY7A 3V8UA 4GHBA 4AKMA 2N2LA 2MNHA 2GMYA 5DL7A 5DIKA 2Y7SA 4GF4A 5JDPA 3BRYA 2J4UP 3A0HO 2WVPA 2XTRA 4FZNA 3AA1A 1PHOA 3HOLA 1ZHYA 4XNKA 2KZ7A 3PGRA 2WJRA 4RLCA 5G3AA 2JMMA 4C69X 1ZHWA 3LK3B 1YS5A 3A0BO 3QRAA 4O3ZA 4B61A 4D5UA 3PRNA 1KNCA 2K0LA 4PR7A 3T24A 5IYUA 2ODJA 3A2SX 4FOZA 3PQUA 3RBHA 1OSMA 3KZIO 3PGUA 3AAEA 2AXTO 5G39A 2LHFA 4GCQA 4UB6O 2XMXA 1GU9A 4G75A 4GCPA 2XE1A 4N58A 3EMNX 1GFOA 4UB8O 2OUWA 4C4VA 2YPVA 5KAFO 2PORA 3SYSA 1MPFA 2F1VA 4AYID 1Q9GA 2O4DA 2X9KA 1BXWA 1BH3A 3UPGA 3C5OA 2XE5A 3HW9A 1LW1A 2M07A 1HXXA 3PGSA 3QRCA 2R4OA 4AKRA 4BUMX 2R8AA 1ZHTA 3VY9X 2GE4A 3VY8X 3BS0A 4LSHA 1HXUA 5D5DA 5GV0A 2ERVA 3HOEA 4PJ0O 3DWOX 4FZMA 2R4PA 3VZTX 3UAQA 4QQ1A 3DA4A 4RL9A 4O3XB 2R88A 3O0EA 3TZGA 3LK2A 2OYOA 3GP6A 5DL8A 4FQEA 5G26A 1H6S1 2IWVA 3AA6B 2QEUA 3JTYA 4FSOA 4KR8A 1IZNB 4AYNA 1ORMA 5GTHO 3VE1A 5FVNA 4XNLA 2IJCA 4FMSA 3SY9A 2Y2XA 3DZMA 3NSGA 1S5LO 1GFMA 2LFUA 4LSEA 3LK3A 2Q0TA 1VKEA 2R4LA 1ZHZA 4C4VB 2PRRA 4U9CA 5G38A 4D65A 2JQYA 2KXPA 2O4VA 5KAIO 4O49A 3VZUX 3AAAB 4N75A 3SYBA 3AA0B 4AUIA 5DL5A 4FUVA 1T1LA 4JCHA 3KVDD 5AFUL 4LSIA 3JCUO 4FRTA 3WI5A 2ES9A 4IL6O 2Y0HA 3D7IA 4FSPA 2XE3A 4D64A 3AA7B 2PFXA 2OMFA 2F1TA 5E79O 3G7GA 3DA3A 4N74A 4AYEC 6PRNA 4FRXA 4AYDC 3FYXA 3POXA 3DWNA 2K4TA 4RLBA 4O4UA 3WU2O 3VZWX 2AF7A 4LSFA 1ME5A 4KR4A 4RJWA 1T16A 1PRNA 2W80C 2FGRA 3AA1B 4CTDA 2Y0LA 4AFKA 5GTIO 3LK2B 4O3YA 5DIPA 2KZ7B 3WI4A 4O3WA 4F4BA 1E54A 1P8CA 2ZLDA 4FT6A 4C00A 2F1CX 1Q9FA 4KRAA 2IWWA 1QJ8A 2YNKA 3LK41 3NJTA 3BRZA 1GFPA 2MHLA 4O4XA 3PF1A 4AZLA 4FZLA 1MM5A 5ADXL 1GFQA 5EE2A 3VE2A 2XTQA 3SZVA 4GCSA 2N2MA 3AAEB 8PRNA 1G90A 2FGQX 2R4NA 5B66O 3AA6A 5B5EO 3LK42 4N59A 3HWBA 2KC0A 3T20A 5DL6A 4K3BA 4AYMC 1IZNA 5PRNA 1BT9A 2ZFGA 1P4TA 4RJXA 5T5FA 2KXPB 2XG6A 2KDYA 4G76A 3LVYA 2X27X
chains in the Genus database with same CATH topology
1YS5A 4FSPA 2XE3A 2Y0KA 4O3XB 3PORA 4RL9A 4D64A 7PRNA 2J1NA 3DA4A 3AA7B 4Z3TA 1QJ9A 2PFXA 3O0EA 3QRAA 3TZGA 2OMFA 2CWQA 5ADXK 1MM4A 2F1TA 3LK2A 4O3ZA 3G7GA 3DA3A 2OYOA 4AYEC 6PRNA 4FRXA 4B61A 3T0SA 3GP6A 4AYDC 3FYXA 3POXA 2K4TA 4D5UA 5DL8A 3PRNA 4RLBA 4O4UA 3VZWX 1KNCA 2AF7A 5G26A 4LSFA 1ZHXA 2K0LA 4AKRB 1ME5A 1OPFA 4KR4A 4E1TA 1GFNA 2PRNA 3T24A 2XE2A 1HXTA 4RJWA 3SZDA 1PRNA 2W80C 5IYUA 4FESA 2FGRA 1H6S1 3AA1B 2ODJA 2Y0LA 3A2SX 2W81C 4AFKA 4FOZA 3AA6B 3PQUA 3RBHA 1OSMA 3LK2B 4O3YA 5DIPA 2QEUA 2KZ7B 3AAEA 1QJPA 3JTYA 3WI4A 4FSOA 4O3WA 4KR8A 3POUA 4G9QA 3AAAA 1IZNB 2LHFA 3AA0A 4AYNA 1E54A 1P8CA 4F4BA 1ORMA 2ZLDA 4FT6A 4GCQA 3VE1A 5FVNA 2XMXA 1GU9A 4G75A 4GCPA 2XE1A 4N58A 4XNLA 2IJCA 3EMNX 1GFOA 4FMSA 2OUWA 3SY9A 3K19A 2YPVA 3BEYA 2PORA 1Q9FA 2Y2XA 1THQA 4KRAA 3NSGA 3SYSA 1MPFA 1GFMA 2LFUA 2F1VA 2M06A 4AYID 1QJ8A 4PUXA 1Q9GA 4LSEA 3UU2A 2O4DA 2JN8A 3LK3A 2QTKA 2YNKA 4E1SA 3LK41 4JFBA 5AFUK 3C1LA 3AA7A 3PQSA 3POQA 2Q0TA 1BXWA 1BH3A 3SY7A 1VKEA 1ZHZA 3V8UA 1GFPA 2MHLA 2PRRA 4GHBA 4O4XA 4AKMA 3UPGA 2N2LA 2MNHA 2GMYA 4U9CA 5DL7A 5DIKA 2Y7SA 3C5OA 2XE5A 4GF4A 4AZLA 4FZLA 5JDPA 3HW9A 1LW1A 2M07A 1HXXA 1MM5A 4D65A 5ADXL 3QRCA 2J4UP 1GFQA 5EE2A 4AKRA 4BUMX 3VE2A 2XTQA 1ZHTA 2KXPA 2O4VA 2GE4A 3SZVA 4GCSA 2XTRA 3VY8X 3VY9X 2N2MA 3AAEB 8PRNA 1G90A 2FGQX 3AA1A 4FZNA 4LSHA 4O49A 1PHOA 1HXUA 3HOLA 3VZUX 5D5DA 3AA6A 3AAAB 3SYBA 3AA0B 3LK42 1ZHYA 4XNKA 4N59A 5GV0A 3HWBA 2ERVA 2KZ7A 2KC0A 3HOEA 4AUIA 4RLCA 3T20A 5DL5A 5DL6A 4AYMC 1IZNA 5PRNA 1BT9A 4FUVA 4FZMA 4JCHA 2ZFGA 3KVDD 1P4TA 4LSIA 4RJXA 5AFUL 2JMMA 4C69X 4FRTA 1ZHWA 3VZTX 5T5FA 3UAQA 3WI5A 2ES9A 2KXPB 2XG6A 4QQ1A 2KDYA 4G76A 3LK3B 2Y0HA 3LVYA 3D7IA 2X27X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AA6 B;  3AAE B;  3AA1 A;  3LK3 A;  3AA7 B;  3LK2 B;  3LK4 1;  5AFU K;  3AA6 A;  2KZ7 B;  3AAA B;  3AAE A;  3AA7 A;  5ADX K;  3AA0 B;  3LK4 2;  3LK2 A;  3AAA A;  2KZ7 A;  1IZN B;  3AA0 A;  1IZN A;  5AFU L;  4AKR B;  2KXP B;  5ADX L;  4AKR A;  3AA1 B;  3LK3 B;  2KXP A; 
#chains in the Genus database with same CATH topology
 2Y0K A;  3POR A;  7PRN A;  2J1N A;  4Z3T A;  1QJ9 A;  2CWQ A;  5ADX K;  1MM4 A;  3T0S A;  1ZHX A;  4AKR B;  2WJQ A;  1OPF A;  4E1T A;  1GFN A;  2PRN A;  2XE2 A;  1HXT A;  3SZD A;  4FES A;  2R89 A;  2W81 C;  4K3C A;  1QJP A;  5H2F O;  3POU A;  4G9Q A;  3AAA A;  3AA0 A;  3K19 A;  3BEY A;  1THQ A;  2M06 A;  4PUX A;  3UU2 A;  2JN8 A;  2QTK A;  4E1S A;  4JFB A;  5AFU K;  3C1L A;  3AA7 A;  3PQS A;  3POQ A;  5TIS O;  3SY7 A;  3V8U A;  4GHB A;  4AKM A;  2N2L A;  2MNH A;  2GMY A;  5DL7 A;  5DIK A;  2Y7S A;  4GF4 A;  5JDP A;  3BRY A;  2J4U P;  3A0H O;  2WVP A;  2XTR A;  4FZN A;  3AA1 A;  1PHO A;  3HOL A;  1ZHY A;  4XNK A;  2KZ7 A;  3PGR A;  2WJR A;  4RLC A;  5G3A A;  2JMM A;  4C69 X;  1ZHW A;  3LK3 B;  1YS5 A;  3A0B O;  3QRA A;  4O3Z A;  4B61 A;  4D5U A;  3PRN A;  1KNC A;  2K0L A;  4PR7 A;  3T24 A;  5IYU A;  2ODJ A;  3A2S X;  4FOZ A;  3PQU A;  3RBH A;  1OSM A;  3KZI O;  3PGU A;  3AAE A;  2AXT O;  5G39 A;  2LHF A;  4GCQ A;  4UB6 O;  2XMX A;  1GU9 A;  4G75 A;  4GCP A;  2XE1 A;  4N58 A;  3EMN X;  1GFO A;  4UB8 O;  2OUW A;  4C4V A;  2YPV A;  5KAF O;  2POR A;  3SYS A;  1MPF A;  2F1V A;  4AYI D;  1Q9G A;  2O4D A;  2X9K A;  1BXW A;  1BH3 A;  3UPG A;  3C5O A;  2XE5 A;  3HW9 A;  1LW1 A;  2M07 A;  1HXX A;  3PGS A;  3QRC A;  2R4O A;  4AKR A;  4BUM X;  2R8A A;  1ZHT A;  3VY9 X;  2GE4 A;  3VY8 X;  3BS0 A;  4LSH A;  1HXU A;  5D5D A;  5GV0 A;  2ERV A;  3HOE A;  4PJ0 O;  3DWO X;  4FZM A;  2R4P A;  3VZT X;  3UAQ A;  4QQ1 A;  3DA4 A;  4RL9 A;  4O3X B;  2R88 A;  3O0E A;  3TZG A;  3LK2 A;  2OYO A;  3GP6 A;  5DL8 A;  4FQE A;  5G26 A;  1H6S 1;  2IWV A;  3AA6 B;  2QEU A;  3JTY A;  4FSO A;  4KR8 A;  1IZN B;  4AYN A;  1ORM A;  5GTH O;  3VE1 A;  5FVN A;  4XNL A;  2IJC A;  4FMS A;  3SY9 A;  2Y2X A;  3DZM A;  3NSG A;  1S5L O;  1GFM A;  2LFU A;  4LSE A;  3LK3 A;  2Q0T A;  1VKE A;  2R4L A;  1ZHZ A;  4C4V B;  2PRR A;  4U9C A;  5G38 A;  4D65 A;  2JQY A;  2KXP A;  2O4V A;  5KAI O;  4O49 A;  3VZU X;  3AAA B;  4N75 A;  3SYB A;  3AA0 B;  4AUI A;  5DL5 A;  4FUV A;  1T1L A;  4JCH A;  3KVD D;  5AFU L;  4LSI A;  3JCU O;  4FRT A;  3WI5 A;  2ES9 A;  4IL6 O;  2Y0H A;  3D7I A;  4FSP A;  2XE3 A;  4D64 A;  3AA7 B;  2PFX A;  2OMF A;  2F1T A;  5E79 O;  3G7G A;  3DA3 A;  4N74 A;  4AYE C;  6PRN A;  4FRX A;  4AYD C;  3FYX A;  3POX A;  3DWN A;  2K4T A;  4RLB A;  4O4U A;  3WU2 O;  3VZW X;  2AF7 A;  4LSF A;  1ME5 A;  4KR4 A;  4RJW A;  1T16 A;  1PRN A;  2W80 C;  2FGR A;  3AA1 B;  4CTD A;  2Y0L A;  4AFK A;  5GTI O;  3LK2 B;  4O3Y A;  5DIP A;  2KZ7 B;  3WI4 A;  4O3W A;  4F4B A;  1E54 A;  1P8C A;  2ZLD A;  4FT6 A;  4C00 A;  2F1C X;  1Q9F A;  4KRA A;  2IWW A;  1QJ8 A;  2YNK A;  3LK4 1;  3NJT A;  3BRZ A;  1GFP A;  2MHL A;  4O4X A;  3PF1 A;  4AZL A;  4FZL A;  1MM5 A;  5ADX L;  1GFQ A;  5EE2 A;  3VE2 A;  2XTQ A;  3SZV A;  4GCS A;  2N2M A;  3AAE B;  8PRN A;  1G90 A;  2FGQ X;  2R4N A;  5B66 O;  3AA6 A;  5B5E O;  3LK4 2;  4N59 A;  3HWB A;  2KC0 A;  3T20 A;  5DL6 A;  4K3B A;  4AYM C;  1IZN A;  5PRN A;  1BT9 A;  2ZFG A;  1P4T A;  4RJX A;  5T5F A;  2KXP B;  2XG6 A;  2KDY A;  4G76 A;  3LVY A;  2X27 X; 
#chains in the Genus database with same CATH homology
 1YS5 A;  4FSP A;  2XE3 A;  2Y0K A;  4O3X B;  3POR A;  4RL9 A;  4D64 A;  7PRN A;  2J1N A;  3DA4 A;  3AA7 B;  4Z3T A;  1QJ9 A;  2PFX A;  3O0E A;  3QRA A;  3TZG A;  2OMF A;  2CWQ A;  5ADX K;  1MM4 A;  2F1T A;  3LK2 A;  4O3Z A;  3G7G A;  3DA3 A;  2OYO A;  4AYE C;  6PRN A;  4FRX A;  4B61 A;  3T0S A;  3GP6 A;  4AYD C;  3FYX A;  3POX A;  2K4T A;  4D5U A;  5DL8 A;  3PRN A;  4RLB A;  4O4U A;  3VZW X;  1KNC A;  2AF7 A;  5G26 A;  4LSF A;  1ZHX A;  2K0L A;  4AKR B;  1ME5 A;  1OPF A;  4KR4 A;  4E1T A;  1GFN A;  2PRN A;  3T24 A;  2XE2 A;  1HXT A;  4RJW A;  3SZD A;  1PRN A;  2W80 C;  5IYU A;  4FES A;  2FGR A;  1H6S 1;  3AA1 B;  2ODJ A;  2Y0L A;  3A2S X;  2W81 C;  4AFK A;  4FOZ A;  3AA6 B;  3PQU A;  3RBH A;  1OSM A;  3LK2 B;  4O3Y A;  5DIP A;  2QEU A;  2KZ7 B;  3AAE A;  1QJP A;  3JTY A;  3WI4 A;  4FSO A;  4O3W A;  4KR8 A;  3POU A;  4G9Q A;  3AAA A;  1IZN B;  2LHF A;  3AA0 A;  4AYN A;  1E54 A;  1P8C A;  4F4B A;  1ORM A;  2ZLD A;  4FT6 A;  4GCQ A;  3VE1 A;  5FVN A;  2XMX A;  1GU9 A;  4G75 A;  4GCP A;  2XE1 A;  4N58 A;  4XNL A;  2IJC A;  3EMN X;  1GFO A;  4FMS A;  2OUW A;  3SY9 A;  3K19 A;  2YPV A;  3BEY A;  2POR A;  1Q9F A;  2Y2X A;  1THQ A;  4KRA A;  3NSG A;  3SYS A;  1MPF A;  1GFM A;  2LFU A;  2F1V A;  2M06 A;  4AYI D;  1QJ8 A;  4PUX A;  1Q9G A;  4LSE A;  3UU2 A;  2O4D A;  2JN8 A;  3LK3 A;  2QTK A;  2YNK A;  4E1S A;  3LK4 1;  4JFB A;  5AFU K;  3C1L A;  3AA7 A;  3PQS A;  3POQ A;  2Q0T A;  1BXW A;  1BH3 A;  3SY7 A;  1VKE A;  1ZHZ A;  3V8U A;  1GFP A;  2MHL A;  2PRR A;  4GHB A;  4O4X A;  4AKM A;  3UPG A;  2N2L A;  2MNH A;  2GMY A;  4U9C A;  5DL7 A;  5DIK A;  2Y7S A;  3C5O A;  2XE5 A;  4GF4 A;  4AZL A;  4FZL A;  5JDP A;  3HW9 A;  1LW1 A;  2M07 A;  1HXX A;  1MM5 A;  4D65 A;  5ADX L;  3QRC A;  2J4U P;  1GFQ A;  5EE2 A;  4AKR A;  4BUM X;  3VE2 A;  2XTQ A;  1ZHT A;  2KXP A;  2O4V A;  2GE4 A;  3SZV A;  4GCS A;  2XTR A;  3VY8 X;  3VY9 X;  2N2M A;  3AAE B;  8PRN A;  1G90 A;  2FGQ X;  3AA1 A;  4FZN A;  4LSH A;  4O49 A;  1PHO A;  1HXU A;  3HOL A;  3VZU X;  5D5D A;  3AA6 A;  3AAA B;  3SYB A;  3AA0 B;  3LK4 2;  1ZHY A;  4XNK A;  4N59 A;  5GV0 A;  3HWB A;  2ERV A;  2KZ7 A;  2KC0 A;  3HOE A;  4AUI A;  4RLC A;  3T20 A;  5DL5 A;  5DL6 A;  4AYM C;  1IZN A;  5PRN A;  1BT9 A;  4FUV A;  4FZM A;  4JCH A;  2ZFG A;  3KVD D;  1P4T A;  4LSI A;  4RJX A;  5AFU L;  2JMM A;  4C69 X;  4FRT A;  1ZHW A;  3VZT X;  5T5F A;  3UAQ A;  3WI5 A;  2ES9 A;  2KXP B;  2XG6 A;  4QQ1 A;  2KDY A;  4G76 A;  3LK3 B;  2Y0H A;  3LVY A;  3D7I A;  2X27 X; 
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