The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
57
|
sequence length |
206
|
structure length |
196
|
Chain Sequence |
MVDFKMTKEGLVLLIKDYQNLEEVLNAISARITQMGGFFAKGDRISLMIENHNKHSQDIPRIVSHLRNLGLEVSQILVGKVQSRTTVESTGKVIKRNIRSGQTVVHSGDVIVFGNVNKGAEILAGGSVVVFGKAQGNIRAGLNEGGQAVVAALDLQTSLIQIAGFITHSKGEENVPSIAHVKGNRIVIEPFDKVSF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structure of the Bacterial Cell-Division Inhibitor Minc
pubmed doi rcsb |
| molecule tags |
Cell division protein
|
| source organism |
Thermotoga maritima
|
| molecule keywords |
SEPTUM SITE-DETERMINING PROTEIN MINC
|
| total genus |
57
|
| structure length |
196
|
| sequence length |
206
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2000-11-27 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03775 | MinC_C | Septum formation inhibitor MinC, C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Pectate Lyase C-like | ||
| Alpha Beta | 2-Layer Sandwich | Transcription Regulator spoIIAA | Cell-division inhibitor MinC, N-terminal domain |
#chains in the Genus database with same CATH superfamily 1K8F A; 1HF2 A; 2BX6 A; 2B0R A; 3BH6 B; 1K4Z A; 4V02 C; 1KQ5 A; 2YUH A; 3BH7 B; #chains in the Genus database with same CATH topology 1THN B; 2J8I A; 2F3L A; 4XOR A; 2RRL A; 3LKL A; 1O8M A; 2NST A; 2NSP A; 2O0W A; 1NHC A; 1LLW A; 4OPW A; 4XQF A; 2W7Z A; 3D3U A; 1TIL B; 2BM4 A; 3ML3 A; 2O0V A; 2PEC A; 1LLZ A; 1KQ5 A; 2KA5 A; 3VST A; 3VSU A; 2IOU G; 1O8F A; 1BUZ A; 3DJA A; 2V5I A; 1OFD A; 2ZO9 B; 4XLC A; 1OGM X; 2IQ7 A; 1O8J A; 3EQO A; 1TYU A; 1TID B; 2NTQ A; 3B8Y A; 2INV A; 1EA0 A; 4HWV A; 4NK6 A; 1O8D A; 2PYG A; 4W8S A; 1H4Y A; 1EZG A; 3T6O A; 3N90 A; 3F43 A; 4U4B A; 1H4X A; 3SYJ A; 3GHF A; 3BH6 B; 4DMG A; 1O8I A; 1WXR A; 1LM1 A; 3B4N A; 4XLE A; 3MGL A; 2OAS A; 1FC9 A; 3BH7 B; 3IH9 A; 4QTP A; 4YZ0 A; 2XTW A; 1DAB A; 1EE6 A; 2O04 A; 1RMG A; 1K5C A; 1JTA A; 1KCD A; 4OJL A; 2BM6 A; 4YZA A; 4XL9 A; 2O1D A; 1FC7 A; 4W8Q A; 3GQ7 A; 1FCF A; 3MOG A; 3NY7 A; 4KH3 A; 2NT6 A; 2UVF A; 5DNS A; 1O88 A; 4Z03 A; 1IB4 A; 3VMW A; 3JUR A; 1QA2 A; 2VBM A; 3TH0 A; 1O8L A; 1QCX A; 2NZM A; 1K8F A; 2ZOA A; 4XLH A; 3SUC A; 3PSZ A; 2Z8G A; 3LJY A; 5C1E A; 3GQ9 A; 2G0Y A; 1T6R A; 4MXN A; 2X6X A; 1N6E A; 3IH8 A; 1O8G A; 1PXZ A; 1O8E A; 3DOR A; 4OJO A; 3WWG A; 1O8H A; 1QJV A; 4HIZ A; 1K4Z A; 1WXW A; 4JC0 A; 4L8K A; 5JLV C; 1L1I A; 1WMR A; 4XKW A; 4V02 C; 2VFQ A; 5EUX A; 2NT9 A; 3UW0 A; 2DXN A; 4DGH A; 3PET A; 3GVL A; 3AGD A; 2X85 A; 2VFO A; 2QXZ A; 2INU A; 3H09 A; 3SQV A; 2VBK A; 3LMW A; 1X0C A; 1TH8 B; 4OZZ A; 2XC1 A; 3AGE A; 1OFE A; 2DXL A; 2EWE A; 3PSS A; 4XLF A; 1K32 A; 1QQ1 A; 5EUS A; 3ZXN A; 2VFM A; 3IHA A; 5EUZ A; 5EUW A; 3LLO A; 4XLA A; 2VFP A; 4AE2 A; 2XTY A; 5C1C A; 2X3H A; 4U49 A; 3N6Z A; 4XOT A; 2AS0 A; 1OFM A; 4Z05 A; 4I84 A; 3GK7 A; 2VFN A; 1HG8 A; 1TYX A; 3GQA A; 4OJ5 A; 1CLW A; 2KLN A; 5EUU A; 4XMY A; 1IA5 A; 2O6W A; 4AVZ A; 1IDK A; 3SZE A; 1TSP A; 1PE9 A; 3FY3 A; 4OZY A; 3VSV A; 4YEJ A; 3ZPP A; 1FC6 A; 1QRB A; 1OGO X; 3DU1 X; 3K50 A; 3D03 A; 1H4Z A; 4JRA C; 3GQ8 A; 3EQN A; 4YCQ A; 3C0K A; 4YDT A; 4C2L A; 2QX3 A; 2XTX A; 2BSP A; 2UVE A; 5EZB A; 4YC5 A; 4XKV A; 2X6Y A; 3KRG A; 2QYU A; 1BHE A; 3B90 A; 4XNF A; 1OFL A; 2QZA A; 2VJI A; 4XN3 A; 3NAW A; 1V0E A; 4HYL A; 3V8V A; 1AUZ A; 4OJ6 A; 3GMF A; 2NTP A; 1RWR A; 2BM7 A; 4W8R A; 4L1C A; 2YUH A; 5AMV A; 2VY9 A; 1QA3 A; 3NB2 A; 1DBG A; 1AIR A; 1O8K A; 1IDJ A; 4PMH A; 1BN8 A; 4XOP A; 2NTB A; 1QRC A; 2O17 A; 2ODL A; 1V0F A; 4URR A; 4EW9 A; 4DGF A; 1DBO A; 4GHN A; 3QDQ A; 3GVK A; 1KCC A; 3JU4 A; 1QA1 A; 1VBL A; 2VJJ A; 4YZQ A; 3LYC A; 4OJP A; 3DUP A; 2BM5 A; 2CWW A; 1J7X A; 5JMC B; 2B78 A; 4YFO A; 2J8K A; 1HF2 A; 1CZF A; 2BX6 A; 1GQ8 A; 1TYW A; 3ZTB A; 3T9G A; 4OM9 A; 1XG2 A; 3IF5 A; 3IHB A; 1JRG A; 4AEJ A; 1KTW A; 3GVJ A; 3EH7 A; 2XT2 A; 4MR0 A; 3OIZ A; 1H80 A; 2VBE A; 4Z06 A; 1OOC A; 1SBO A; 4YEI A; 3VMV A; 4XN0 A; 1VC1 A; 2B0R A; 4XON A; 3GRH A; 4XM3 A; 3AK5 A; 3ZSC A; 4YZX A; 3OIR A; 1BPL A; 4YEL A; 3VSE A; 4NK8 A; 1WXX A; 2XT4 A; 2PYH A; 3LDF A; 3P4G A; 3V97 A; 1N6D A; 3SY2 A; 4XS5 A; 1N6F A; 2QY1 A; 4XR6 A; 4W8T A; 3JX8 A; 1RU4 A; 3RIQ A; 1PLU A; 1TYV A; 2X6W A; #chains in the Genus database with same CATH homology 1TYX A; 4JRA C; 2J8I A; 3PET A; 2F3L A; 2IOU G; 3LYC A; 3TH0 A; 2VFO A; 4OJP A; 3P4G A; 3BH7 B; 3H09 A; 1K8F A; 2V5I A; 2VFP A; 2BM5 A; 1QA3 A; 4OJ5 A; 2B0R A; 1DAB A; 1CLW A; 2VFQ A; 1QRC A; 5JMC B; 2XC1 A; 4OJO A; 4OJ6 A; 2BM7 A; 3JX8 A; 1HF2 A; 3N6Z A; 4OPW A; 3RIQ A; 2BX6 A; 3LJY A; 4KH3 A; 3AK5 A; 2W7Z A; 3SZE A; 3N90 A; 1TSP A; 1K4Z A; 1TYU A; 1TYW A; 2YUH A; 2BM4 A; 3ML3 A; 5JLV C; 1QQ1 A; 4OJL A; 3SYJ A; 2G0Y A; 2BM6 A; 4OM9 A; 1QRB A; 1TYV A; 3BH6 B; 2VFN A; 4V02 C; 2VFM A; 1KQ5 A; 1WXR A; 1QA1 A; 1QA2 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
