The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
27
|
sequence length |
157
|
structure length |
157
|
Chain Sequence |
LSWDINDVKLPQNVKTTDWFQEWPDSYVKHIYSSDDRNAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCSRDCSTEEGRKIYLRPAICDKARQKQQRKSCPNCNGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPRPETKLEAEARRAMK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structure of the Gcm Domain-DNA Complex: A DNA-Binding Domain with a Novel Fold and Mode of Target Site Recognition
pubmed doi rcsb |
| molecule keywords |
MGCM1
|
| molecule tags |
Transcription factor/dna
|
| source organism |
Mus musculus
|
| total genus |
27
|
| structure length |
157
|
| sequence length |
157
|
| ec nomenclature | |
| pdb deposition date | 2003-02-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03615 | GCM | GCM motif protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Single Sheet | Rubrerythrin, domain 2 | Rubrerythrin, domain 2 | ||
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8; Chain: A, domain 1 | Ribosomal Protein S8; Chain: A, domain 1 |
#chains in the Genus database with same CATH superfamily 1ODH A; #chains in the Genus database with same CATH topology 5M3F L; 2E2H L; 1V9N A; 1NXG A; 3GR5 A; 3H3V M; 5AN9 H; 5EIO C; 3RZO L; 4E9J A; 4NXN H; 4AYB P; 1SMW A; 1DT4 A; 2BE5 D; 1BFY A; 3KYY A; 1RYT A; 2QND A; 8RXN A; 2HR5 A; 3HKZ P; 4LF8 H; 3PKI A; 4BXX L; 1YUZ A; 2M6Q A; 1CAA A; 1IW7 D; 4A3L L; 3LWR B; 1WHR A; 2AUS B; 1R0G A; 1PFY A; 3CQZ L; 4LHN A; 5LMU H; 2XJT A; 3GTL L; 4A3I L; 4JI5 H; 2UXB H; 5LMN H; 4G6B A; 2JA6 L; 4YHH H; 4X65 H; 3PL5 A; 4AHY A; 2FPH X; 3B08 B; 2KN9 A; 3I4M L; 4JI8 H; 2CR8 A; 4C3J L; 4FJS A; 2GMG A; 3PO2 L; 2FFM A; 4LFA H; 5JVG 1; 3S14 L; 4BA2 I; 5BR8 H; 1K83 L; 4QIW P; 2CTE A; 1YUX A; 3RZ6 A; 2AYJ A; 4ZN1 B; 2B5I D; 3S2D L; 5C4X L; 2CKA A; 3LWP B; 3QD7 X; 2XJQ A; 5MGN A; 1XMO H; 1IBK H; 3M4O L; 3GTP L; 3PZA A; 1TWG L; 4AR5 A; 1HR0 H; 3WWN B; 1S30 A; 4A3C L; 5C44 L; 3QVD A; 3B0A B; 1TUA A; 4LF9 H; 5MLC 3; 1BRF A; 1I3Q L; 2OPU A; 1R0I A; 4JAG A; 2E2J L; 2A6H D; 2ZIX A; 3KYV A; 1SEI A; 4A3M L; 1S20 A; 1PZX A; 3S1N L; 1BQ9 A; 5IP7 L; 3KDK A; 3UOE A; 2JEA I; 1YK4 A; 2AXY A; 5H1S c; 2AQC A; 4DR6 H; 2HHH H; 3VPB E; 1LTL A; 2NVX L; 3GTK L; 2RDV A; 2CWH A; 1E8J A; 1WE8 A; 2CWF A; 1R0J A; 4TVM A; 2PQU A; 1OWB A; 3I4N L; 3GTG L; 4BBR L; 4AI0 A; 3K7A L; 3NFP I; 2E5L H; 5K2M E; 1Y1W L; 1ZZK A; 4LIJ A; 1RYQ A; 4DR7 H; 5LL6 b; 2UUC H; 4A3G L; 5IY0 A; 3GTM L; 4AHX A; 2E3U A; 2CTM A; 3HJY B; 1ZRP A; 2K1H A; 3PO3 L; 3QQC E; 3K35 A; 1X4M A; 2L0Z A; 4LF5 H; 4OCH A; 4NZR M; 1B2J A; 2VUM L; 1RB9 A; 2PSM C; 5GAG c; 3S1M L; 4A93 L; 4B3S H; 3PWF A; 4Y52 L; 3HOU L; 2UUB H; 1QCV A; 4GS7 D; 2XJV A; 4AR3 A; 4A3J L; 3RYG A; 4TPU A; 2ZQE A; 1I6U A; 1TWF L; 3KDG A; 5FJ8 L; 4X6A L; 1Z2I A; 2ANN A; 2ERS A; 5GAD c; 1RDG A; 4BA1 I; 3IU3 I; 4A3D L; 2VQF H; 4AI3 A; 4FJU A; 4V19 6; 2OPV A; 4DR5 H; 2K2D A; 5DM7 1; 2WB1 P; 1Z92 B; 1I50 L; 1IRN A; 1VZG A; 4LFB H; 1WJV A; 1AN7 A; 2H12 A; 3GTQ L; 2A69 D; 5IT9 W; 4AIM A; 2V0F A; 5MF6 A; 3NCV A; 2PVX A; 1PFW A; 2LRR A; 1XNQ H; 3KYW A; 5A2Q W; 1J5K A; 4LHL A; 4E6Y A; 4JAE A; 1B71 A; 3MQK B; 3LNL A; 4KHP H; 4ZN3 B; 5EIN C; 3H9C A; 1V8C A; 2NVY L; 3HJW B; 1FKA H; 5C4J L; 5AI3 A; 4WFN 1; 1MSZ A; 3GTO L; 1B2O A; 2JEB I; 4X64 H; 2P2R A; 1YV1 A; 2QL0 A; 1XNR H; 3LWV B; 3S1R L; 2JI2 A; 2PMZ P; 1T9P A; 5IYC L; 3HOW L; 4POF A; 4B3R H; 2NYD A; 1N33 H; 1LKP A; 2PY9 A; 3OSS D; 1VBI A; 2JI1 A; 4A3E L; 2XJU A; 2LF0 A; 5GAE c; 2JVZ A; 2CTJ A; 4DR4 H; 2O4C A; 1UG8 A; 2CTL A; 4AHZ A; 3T1H H; 2VQE H; 3P2A A; 4DV4 H; 2M6O A; 4H8A A; 2CPQ A; 4AI2 A; 3M3Y L; 4JVY A; 3PIP 1; 1RDV A; 2O5J D; 4DV1 H; 4JI3 H; 4C3I L; 2ERJ A; 1X4N A; 2D9I A; 3GKU A; 2XJS A; 4BY7 L; 4JI6 H; 1R0F A; 5MFZ A; 1P7P A; 4POG A; 1R0H A; 2APO B; 1J5E H; 4NXM H; 4YWL A; 4B8C D; 3J80 W; 2UUA H; 2LTL A; 4YWM A; 1I6H L; 1R9T L; 4DUY H; 5DM6 1; 1ZZJ A; 1JYB A; 4AM3 A; 1FJG H; 3LPE B; 1I94 H; 3H97 A; 1S03 G; 4AR4 A; 4ME3 A; 5C0X G; 1J4W A; 3PKJ A; 4JI4 H; 4JVH A; 2Y3M A; 2ANR A; 7RXN A; 2JA9 A; 4A3F L; 2PPT A; 2NVQ L; 3LWO B; 2XJP A; 3MSU A; 4C3H L; 3FDJ A; 3LWQ B; 1LKO A; 2CTF A; 2HH3 A; 1PQX A; 1F4L A; 4B3M H; 4NBQ A; 1BE7 A; 2BL5 A; 1BQ8 A; 2DSX A; 5JEA G; 1ZZI A; 1XMQ H; 4DV6 H; 1N34 H; 2R7Z L; 1TWH L; 2VL6 A; 2LCQ A; 5FLX W; 1FHM A; 1PFU A; 3J7Z 1; 2E2I L; 4JI1 H; 3JAM W; 2PYA A; 4NZT M; 4JAF A; 3PIO 1; 1HNX H; 5IYB L; 1SMM A; 4PDB A; 2DGR A; 4WAN A; 1S24 A; 3H0G L; 1VZH A; 1SFO L; 4DV5 H; 1ZTG A; 2CKC A; 4EC5 A; 1OWC A; 4B3T H; 4JI0 H; 3SB1 A; 1VIG A; 3HOV L; 3JR7 A; 2CTK A; 4QMF B; 4JAD A; 4AR6 A; 2HH2 A; 3L7Z C; 2JA5 L; 2A6E D; 1IU5 A; 1H7V A; 5M5Y L; 2UXD H; 1SMU A; 1WCM L; 1S2Z A; 3HOX L; 1YK5 A; 4GKJ H; 3FAU A; 1IU6 A; 4WAL A; 4C2M 1; 4DV2 H; 1EC6 A; 1N32 H; 2C6A A; 2XJR A; 3HOY L; 3KYU A; 2VKC A; 3V69 A; 4DV0 H; 2CPM A; 5JVH 1; 2JI3 A; 3P8B A; 4AI1 A; 4DR3 H; 4OD6 A; 4K0K H; 2X06 A; 3FKI L; 1Y1V L; 4AHW A; 1FHH A; 1ODH A; 1HNW H; 5IWA H; 1KHM A; 4DV7 H; 1VZI A; 4DUZ H; 1NXE A; 4AQY H; 3KYX A; 4LF4 H; 3S15 L; 3WWL A; 3SS2 A; 1C09 A; 1N36 H; 2UXC H; 4UY8 1; 3OTO H; 1K1G A; 6RXN A; 5IYD L; 2R92 L; 1TWC L; 4DR2 H; 2Y0S P; 3H9B A; 4G08 A; 4JI7 H; 5C3E L; 3HOZ L; 2M8W A; 2LTM A; 1RWD A; 3I0P A; 3H99 A; 4OO1 G; 3OET A; 4LFC H; 3EZJ A; 2V3B B; 3J7Y 1; 2M6P A; 1X9Z A; 1T9O A; 1WTJ A; 3S1Q L; 1XRH A; 4Y7N L; 1TWA L; 1QQT A; 5K36 G; 1PFV A; 3A44 A; 4XXB B; 1B13 A; 2G8Y A; 4BBS L; 4B8T A; 2JZX A; 5M5W L; 2F4V H; 3S2H L; 4LF6 H; 5M3M L; 2A68 D; 1WVN A; 1F0X A; 2M4Y A; 3RF2 A; 3AEV B; 1DX8 A; 2ZM6 H; 1IRO A; 2RFK B; 4IFD G; 3S17 L; 2V0E A; 3GAB A; 4XGH A; 1QYB A; 5RXN A; 5M5X L; 2JA7 L; 3RZT A; 3GTJ L; 4OX9 H; 2PT7 G; 5FLM L; 2NVT L; 2Z0S A; 3U1K A; 2HVY C; 1T9Q A; 1VCX A; 3RZD L; 1DVB A; 3T1Y H; 4K9F A; 5MFP A; 2YU9 L; 4A3B L; 1IBL H; 1NNQ A; 2Z3Q B; 2NN6 G; 2FMR A; 1X0A A; 2YQR A; 1DTJ A; 3VKE A; 3J7A K; 5IP9 L; 5AI2 A; 2R93 L; 1NXU A; 4BY1 L; 4DV3 H; 1VIH A; 2J9U B; 2EY4 E; 2A1S A; 4X66 H; 2WAQ P; 4U67 1; 2B63 L; 1HNZ H; 4YY3 H; 5DT9 A; 4LF7 H; 2PVE A; 3S16 L; 1LKM A; 2MJH A; 2C6B A; 1IBM H; 2JA8 L; 3HAX C; 3J81 W; 3MPS A; 2M4V A; 2JE6 I; 4RXN A; 4JI2 H; 2MS3 A; 2Z3R B; 4GKK H; 5GAH c; 2BA0 A; 4DR1 H; 3ZG6 A; 4JYA H; 4X62 H; 4A3K L; 2KKD A; 2UU9 H; 1CAD A; 4JV5 H; #chains in the Genus database with same CATH homology 1NXG A; 3GR5 A; 5AN9 H; 5EIO C; 4E9J A; 4NXN H; 1SMW A; 2BE5 D; 1BFY A; 3KYY A; 1RYT A; 8RXN A; 2HR5 A; 4LF8 H; 3PKI A; 1YUZ A; 1CAA A; 1IW7 D; 1R0G A; 4LHN A; 5LMU H; 2XJT A; 4JI5 H; 2UXB H; 5LMN H; 4G6B A; 4YHH H; 4X65 H; 4AHY A; 2FPH X; 3B08 B; 2KN9 A; 4JI8 H; 2CR8 A; 2GMG A; 4LFA H; 5JVG 1; 5BR8 H; 1YUX A; 3RZ6 A; 2AYJ A; 4ZN1 B; 2B5I D; 2CKA A; 3QD7 X; 2XJQ A; 5MGN A; 1XMO H; 1IBK H; 3PZA A; 4AR5 A; 1HR0 H; 3WWN B; 1S30 A; 3QVD A; 3B0A B; 4LF9 H; 5MLC 3; 1BRF A; 1R0I A; 4JAG A; 2A6H D; 2ZIX A; 3KYV A; 1SEI A; 1BQ9 A; 3KDK A; 1YK4 A; 5H1S c; 4DR6 H; 2HHH H; 3VPB E; 1LTL A; 2RDV A; 1E8J A; 1R0J A; 4TVM A; 1OWB A; 4AI0 A; 3NFP I; 2E5L H; 5K2M E; 1RYQ A; 4DR7 H; 5LL6 b; 2UUC H; 5IY0 A; 4AHX A; 1ZRP A; 3QQC E; 3K35 A; 2L0Z A; 4LF5 H; 4OCH A; 4NZR M; 1B2J A; 1RB9 A; 2PSM C; 5GAG c; 4B3S H; 3PWF A; 2UUB H; 1QCV A; 4GS7 D; 2XJV A; 4AR3 A; 3RYG A; 4TPU A; 2ZQE A; 1I6U A; 3KDG A; 2ERS A; 5GAD c; 1RDG A; 3IU3 I; 2VQF H; 4AI3 A; 4V19 6; 4DR5 H; 2K2D A; 5DM7 1; 1Z92 B; 1IRN A; 1VZG A; 4LFB H; 1WJV A; 1AN7 A; 2H12 A; 2A69 D; 5IT9 W; 2V0F A; 5MF6 A; 3NCV A; 2PVX A; 1XNQ H; 3KYW A; 5A2Q W; 4LHL A; 4E6Y A; 4JAE A; 1B71 A; 3LNL A; 4KHP H; 4ZN3 B; 5EIN C; 1FKA H; 5AI3 A; 4WFN 1; 1B2O A; 4X64 H; 1YV1 A; 2QL0 A; 1XNR H; 2JI2 A; 1T9P A; 4POF A; 4B3R H; 2NYD A; 1N33 H; 1LKP A; 3OSS D; 2JI1 A; 2XJU A; 2LF0 A; 5GAE c; 4DR4 H; 2O4C A; 4AHZ A; 3T1H H; 2VQE H; 3P2A A; 4DV4 H; 2M6O A; 4AI2 A; 3PIP 1; 1RDV A; 2O5J D; 4DV1 H; 4JI3 H; 2D9I A; 2ERJ A; 2XJS A; 4JI6 H; 1R0F A; 5MFZ A; 4POG A; 1R0H A; 1J5E H; 4NXM H; 4YWL A; 4B8C D; 3J80 W; 2UUA H; 4YWM A; 4DUY H; 5DM6 1; 1JYB A; 1FJG H; 3LPE B; 1I94 H; 1S03 G; 4AR4 A; 4ME3 A; 4JI4 H; 3PKJ A; 2Y3M A; 7RXN A; 2PPT A; 2XJP A; 3MSU A; 1LKO A; 4B3M H; 1BE7 A; 1BQ8 A; 2DSX A; 1XMQ H; 4DV6 H; 1N34 H; 2VL6 A; 2LCQ A; 5FLX W; 1FHM A; 3J7Z 1; 4JI1 H; 3JAM W; 2PYA A; 4NZT M; 4JAF A; 3PIO 1; 1HNX H; 1SMM A; 4PDB A; 1S24 A; 1VZH A; 4DV5 H; 2CKC A; 4EC5 A; 1OWC A; 4B3T H; 4JI0 H; 3SB1 A; 4JAD A; 4AR6 A; 2A6E D; 1IU5 A; 1H7V A; 2UXD H; 1SMU A; 1S2Z A; 1YK5 A; 4GKJ H; 3FAU A; 1IU6 A; 4DV2 H; 1N32 H; 2C6A A; 2XJR A; 2VKC A; 3KYU A; 4DV0 H; 5JVH 1; 2JI3 A; 3P8B A; 4AI1 A; 4DR3 H; 4OD6 A; 4K0K H; 4AHW A; 1FHH A; 1ODH A; 1HNW H; 5IWA H; 4DV7 H; 1VZI A; 4DUZ H; 1NXE A; 4AQY H; 3KYX A; 4LF4 H; 3WWL A; 3SS2 A; 1C09 A; 1N36 H; 2UXC H; 4UY8 1; 3OTO H; 6RXN A; 4DR2 H; 4G08 A; 4JI7 H; 1RWD A; 3OET A; 4LFC H; 3EZJ A; 2V3B B; 3J7Y 1; 2M6P A; 1X9Z A; 1T9O A; 3A44 A; 4XXB B; 1B13 A; 2F4V H; 4LF6 H; 2A68 D; 1F0X A; 2M4Y A; 3RF2 A; 1DX8 A; 2ZM6 H; 1IRO A; 2V0E A; 3GAB A; 4XGH A; 1QYB A; 5RXN A; 3RZT A; 4OX9 H; 2PT7 G; 1T9Q A; 1VCX A; 1DVB A; 3T1Y H; 4K9F A; 5MFP A; 1IBL H; 1NNQ A; 2Z3Q B; 3J7A K; 5AI2 A; 4DV3 H; 2J9U B; 4X66 H; 4U67 1; 1HNZ H; 4YY3 H; 5DT9 A; 4LF7 H; 2PVE A; 1LKM A; 2C6B A; 1IBM H; 3J81 W; 3MPS A; 2M4V A; 4RXN A; 4JI2 H; 2MS3 A; 2Z3R B; 4GKK H; 5GAH c; 4DR1 H; 3ZG6 A; 4JYA H; 4X62 H; 2KKD A; 2UU9 H; 1CAD A; 4JV5 H;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
