The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
108
|
sequence length |
391
|
structure length |
391
|
Chain Sequence |
NDGSYQSEIDLSGGANFREKFRNFANELSEAITNSPKGLDRPVPKTEISGLIKTGDNFITPSFKAGYYDHVASDGSLLSYYQSTEYFNNRVLMPILQTTNGTLMANNRGYDDVFRQVPSFSGWSNTKATTVSTSNNLTYDKWTYFAAKGSPLYDSYPNHFFEDVKTLAIDAKDISALKTTIDSEKPTYLIIRGLSGNGSQLNELQLPESVKKVSLYGDYTGVNVAKQIFANVVELEFYSTSKANSFGFNPLVLGSKTNVIYDLFASKPFTHIDLTQVTLQNSDNSAIDANKLKQAVGDIYNYRRFERQFQGYFAGGYIDKYLVKNVNTNKDSDDDLVYRSLKELNLHLEEAYREGDNTYYRVNENYYPGASIYENERASRDSEFQNEILKR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
A structurally distinct human mycoplasma protein that generically blocks antigen-antibody union.
pubmed doi rcsb |
| molecule tags |
Immune system/protein binding
|
| source organism |
Homo sapiens
|
| molecule keywords |
PGT135 heavy chain
|
| total genus |
108
|
| structure length |
391
|
| sequence length |
391
|
| ec nomenclature | |
| pdb deposition date | 2013-12-12 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Translation Initiation Factor IF3 | Translation Initiation Factor IF3 | ||
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8; Chain: A, domain 1 | Ribosomal Protein S8; Chain: A, domain 1 | ||
| Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |
#chains in the Genus database with same CATH superfamily 4NZR M; 4NZT M; #chains in the Genus database with same CATH topology 2P2R A; 4NXN H; 3W3J A; 1KOH A; 1PQX A; 2IFG A; 2UUB H; 3U1K A; 1RQ8 A; 4LFC H; 1PGV A; 1TIG A; 3ULA A; 3WPF A; 2F4V H; 2D9I A; 2OMU A; 1II7 A; 4ECN A; 1IBM H; 3TTC A; 4R5D A; 1JE3 A; 1IBL H; 1QYY A; 3IAB A; 1Z2I A; 2Q4G W; 2M8W A; 4DV5 H; 4LSX C; 5HDH A; 1DCJ A; 3AEV B; 4JI7 H; 4X65 H; 2P1O B; 4M7E C; 3PMH G; 3T1I A; 4KHP H; 4KT1 A; 2P1N B; 1OTN A; 2G8Y A; 3WPH A; 1NXU A; 3OGK B; 5FLX W; 5CMN A; 4JI0 H; 5LMU H; 3E4G A; 2ANN A; 1J4W A; 2CTM A; 1N32 H; 4B3R H; 2O6S A; 5GS2 B; 4L3A A; 3DZE A; 3ULV A; 1H6T A; 1XMQ H; 4V2D A; 2JE1 A; 4Q62 A; 1H0X A; 3TSR E; 4NZT M; 3L7Z C; 2UUC H; 3BZ5 A; 5B4P A; 4NKG A; 3RF2 A; 1N36 H; 2QND A; 2OMT A; 3G04 C; 3SB4 A; 2DGR A; 3UL8 A; 5AWD A; 4DR7 H; 1V8C A; 4K86 A; 4FJU A; 2Z7C A; 1O6V A; 4H09 A; 4U7L A; 4ECO A; 4R6A A; 1O6S A; 1HR0 H; 2ELL A; 4V2E A; 4U06 A; 4PSJ A; 4JVY A; 1XEZ A; 2P1Q B; 2Z64 A; 2BNH A; 3V69 A; 4K88 A; 4WAN A; 3I0P A; 3OJA A; 4R6J A; 4XSQ A; 5LMN H; 1NJ1 A; 1VR4 A; 3DSC A; 1HC7 A; 5CMP A; 1J5E H; 3QKB A; 2NN6 G; 1UDV A; 5A5C A; 4HQ1 A; 4LF6 H; 3WN4 A; 3E3Z A; 4R5C A; 3RJ0 A; 2LF0 A; 3C6O B; 3EZJ A; 3IAB B; 4LSC A; 4Q3I A; 4DV0 H; 4RCW A; 4LFB H; 4QMF B; 3UL7 A; 4Z61 C; 4LSA A; 2OPU A; 1IO0 A; 4DR2 H; 2R9U A; 4J4L A; 1S8E A; 3TSQ A; 4LF7 H; 1X4M A; 1M9L A; 5IJB A; 2Y5Q A; 4BSU A; 2PT7 G; 3J80 W; 5IWA H; 4B3M H; 1X4N A; 2P1M B; 3KJ4 A; 3OGM B; 4JI8 H; 3RFS A; 2Z65 A; 3J81 W; 4AM3 A; 2JZX A; 4AY9 X; 1XEU A; 4HVC A; 1F0X A; 1JO0 A; 5LL6 b; 3WPD A; 5AWB A; 4JVH A; 4TWA A; 1XEC A; 1LN4 A; 1SEI A; 2UZX A; 3VQ2 A; 1ZZI A; 2LTL A; 1WVN A; 2ZM6 H; 2VQF H; 3VTH A; 1HNW H; 2JQD A; 1NJ6 A; 3SB1 A; 4R09 A; 3NCV A; 5GS0 A; 4FBW A; 4JI1 H; 1PAV A; 1ZIW A; 2Z7X B; 4Z8G A; 4FS7 A; 3WPC A; 2RR6 A; 4WI1 A; 1HNZ H; 4CP6 A; 1S03 G; 3ZYI A; 3W3N A; 4RWT C; 3OJA B; 2VKC A; 2Y3M A; 1NH9 A; 3GKU A; 2ANR A; 3G3A A; 1NJ8 A; 3CIG A; 4P8S A; 1D0B A; 4FCG A; 1H4S A; 4Y61 B; 1J5K A; 4R6G A; 3RFE A; 3W3G A; 4LXR A; 1G9U A; 4WP6 A; 2Z62 A; 4TZH A; 5B0N A; 2OPV A; 2CTE A; 3RW7 A; 4OCH A; 4NKH A; 3E2J A; 1FS2 A; 1YRG A; 4RCA B; 2CWH A; 3P72 A; 2UU9 H; 1X9Z A; 2UXC H; 3M19 A; 4DUZ H; 2Z0S A; 4V2C A; 4DR1 H; 4P91 A; 2WFH A; 2WQW A; 1M0Z A; 4I6J B; 2BKY X; 1VM0 A; 2K1H A; 1H4Q A; 1XNR H; 1MSZ A; 2Y1B A; 4AW4 A; 2FFM A; 3VKE A; 1LTX A; 2CTL A; 4H8A A; 2XWT C; 2AST B; 1ZZJ A; 5JEA G; 4DV6 H; 4CC4 A; 2UZY A; 5AZ5 A; 2LRR A; 4LIJ A; 1NJ5 A; 2EK0 A; 1V9N A; 2IFE A; 1FO1 A; 2LTM A; 5A2Q W; 3JB9 j; 4R58 A; 4YY3 H; 3W3L A; 3ZYO A; 4NCX A; 1K1G A; 1JDQ A; 2E5L H; 4J0M A; 3ZIH A; 1OZN A; 4QC0 A; 4MN8 B; 2WQX A; 1NJ2 A; 4R6F A; 1VIG A; 4FJS A; 1I94 H; 2CRQ A; 2O4C A; 3UN9 A; 2WQU A; 4JI6 H; 4IM6 A; 5GMH A; 4KNG A; 4Z79 A; 2FMR A; 2CPQ A; 1Z7X W; 4Z94 G; 3T1H H; 1DCE A; 2Z66 A; 4NZR M; 2V70 A; 3O6N A; 1ZZK A; 1Y2I A; 4B3S H; 4YEB B; 4DV3 H; 3GAB A; 4LFA H; 2H9U A; 4Z9E A; 2L8Y A; 2FT3 A; 4G8A A; 4LF4 H; 2LN3 A; 2LXR A; 4YHH H; 4AQY H; 1O6T A; 2V9T B; 2Z81 A; 4LF8 H; 1DTJ A; 1NFH A; 1XNQ H; 1XKU A; 1ZTG A; 4E9J A; 5IT9 W; 4WYK A; 2BL5 A; 1OOK G; 4JI3 H; 1FQV A; 1SQ0 B; 1Y9X A; 4Q15 A; 3UL9 A; 3RIZ A; 3CVR A; 3FAU A; 3CIY A; 4EC5 A; 4LF9 H; 5AWA A; 2X06 A; 4DR5 H; 3VQ1 A; 2P1P B; 3WPI A; 3OGL B; 4PER A; 4YKE A; 3IAL A; 3W3M A; 2JEB I; 2Q3V A; 4DR6 H; 3LVK B; 4PDB A; 1N34 H; 1OTM A; 1K5G C; 2V9S A; 1A9N A; 1EC6 A; 1FKA H; 3LVJ C; 1KOO A; 2Z63 A; 1HNX H; 1K5D C; 2M71 A; 2O6Q A; 3ZII A; 1NFJ A; 2Z82 A; 4JI4 H; 2XOT A; 4B3T H; 2P9B A; 4FD0 A; 3ZIE A; 1H4T A; 4FHO A; 3G3B A; 4LF5 H; 4DR4 H; 3DSD A; 2HH2 A; 5HZL B; 4PKI G; 3TTD A; 4WAL A; 3ZYJ A; 4HVZ A; 1AN7 A; 4LI2 A; 4U09 A; 1GWB A; 3RFJ A; 5GMG A; 5LFN A; 4OO1 G; 3C6P B; 1M10 B; 4YDQ A; 4QBZ A; 1FJG H; 4L3F A; 1U0N D; 3FXI A; 2EH1 A; 4LSX A; 2HHH H; 5AWC A; 3REZ A; 3ZYN A; 3J7A K; 4M7E A; 4K0K H; 3WPE A; 1IBK H; 1WHR A; 4XOS A; 2YQR A; 4X66 H; 4FBK A; 5IJC A; 4QXE A; 4X64 H; 2A1S A; 4XGO A; 4CNM A; 3RGZ A; 5GMF A; 3U6Y A; 3TSP A; 1XMO H; 4MQW X; 5B0T A; 4BA1 I; 3RW6 A; 4JV5 H; 4DR3 H; 1P8T A; 2BEX A; 1DFJ I; 4EZG A; 4LI1 A; 2VQE H; 1H6U A; 2E3U A; 4OQT A; 1X0A A; 3JAM W; 4BSS A; 2ID5 A; 1WE8 A; 5FTT B; 2JA9 A; 1WWL A; 3A79 B; 2HH3 A; 3G06 A; 3ULU A; 4OLF A; 1P8V A; 4C2A B; 4DV7 H; 4DV2 H; 3ZIG A; 4BV4 R; 3G39 A; 5D3I A; 4CC4 C; 3RGX A; 1DT4 A; 2JVZ A; 2O6R A; 4CNC A; 1WTJ A; 5K36 G; 3OET A; 4KXF B; 3QD7 X; 2PY9 A; 4NBQ A; 2UXB H; 3E6J A; 4PQ8 A; 2OMZ A; 2FPH X; 4GLP A; 4ARR A; 4JYA H; 1FT8 A; 1JL5 A; 2GTC A; 4Q3G A; 2AXY A; 1VIH A; 2RA8 A; 2Z7X A; 2CPM A; 4K87 A; 4BSR A; 2CTF A; 4X62 H; 3KDG A; 4K17 A; 3UOE A; 4G08 A; 4R0A A; 1OGQ A; 3M18 A; 3O53 A; 1XRH A; 2A2Y A; 2M6Q A; 1XWD C; 4DUY H; 4CIL A; 2A0Z A; 1XCD A; 3W3K A; 4GT6 A; 4C2B B; 4LXS A; 2ZQE A; 5C0X G; 4HD0 A; 1A4Y A; 3T1Y H; 2UXD H; 4R07 A; 3WBM A; 4IFD G; 4R08 A; 4JI5 H; 1N33 H; 1VBI A; 3TSU A; 2WQV A; 3OSS D; 5IJD A; 4B8T A; 2JEA I; 1UG8 A; 4DV1 H; 3GOZ A; 3WPB A; 2OMX A; 4FMZ A; 1TUA A; 2BA0 A; 3OTO H; 1I6U A; 4PEQ B; 4B8C D; 2ASS B; 4GKJ H; 2CA6 A; 4EO0 A; 4U08 A; 2OMV A; 4FDW A; 3HZ7 A; 4BA2 I; 2PQU A; 4Z64 C; 4OX9 H; 1ODH A; 2OMW A; 5BR8 H; 2CTJ A; 2CTK A; 4OD6 A; 4JI2 H; 3P04 A; 3VTI A; 3GR5 A; 3TTF A; 2OMY A; 1KHM A; 4AIM A; 1W8A A; 2JE6 I; 3WPG A; 2JE0 A; 2UUA H; 4FBQ A; 1M9S A; 3TOE A; 4NXM H; 4DV4 H; 4ARN A; 1DS9 A; 1P9A G; 4FCX A; 1H0Y A; 1S20 A; 2MJH A; 4GKK H; 5DT9 A; 5IYX C; 3C6N B; 1OTO A; 4UFR A; 3KDK A; 2CWF A; 5GQR K; #chains in the Genus database with same CATH homology 2PT7 G; 3J80 W; 5IWA H; 4B3M H; 4NXN H; 4JV5 H; 2O4C A; 4DR3 H; 2UUB H; 4JI6 H; 4LFC H; 2VQE H; 4JI8 H; 3J81 W; 2F4V H; 2D9I A; 3JAM W; 3T1H H; 1IBM H; 3TTC A; 1F0X A; 5LL6 b; 1IBL H; 4NZR M; 1SEI A; 4DV5 H; 4DV7 H; 4B3S H; 4DV2 H; 3ZIG A; 4DV3 H; 2VQF H; 4JI7 H; 2ZM6 H; 3VTH A; 4X65 H; 1HNW H; 3GAB A; 3OET A; 4LFA H; 3T1I A; 3SB1 A; 4KHP H; 3QD7 X; 3NCV A; 2UXB H; 4LF4 H; 4FBW A; 2LN3 A; 2FPH X; 5FLX W; 4YHH H; 4AQY H; 4JI1 H; 5LMU H; 4JI0 H; 4LF8 H; 4JYA H; 1HNZ H; 1XNQ H; 1N32 H; 4B3R H; 1S03 G; 4E9J A; 5IT9 W; 4JI3 H; 2VKC A; 2Y3M A; 1XMQ H; 4NZT M; 3KDG A; 4X62 H; 3FAU A; 4EC5 A; 4G08 A; 4LF9 H; 2UUC H; 4DR5 H; 4DUY H; 3RF2 A; 1N36 H; 4YKE A; 4DR7 H; 2ZQE A; 4DR6 H; 4OCH A; 4PDB A; 1N34 H; 3T1Y H; 2UXD H; 1FKA H; 1HR0 H; 4JI5 H; 1N33 H; 1HNX H; 2UU9 H; 3TSU A; 3ZII A; 1XEZ A; 3OSS D; 1X9Z A; 4JI4 H; 4B3T H; 2P9B A; 2UXC H; 4DV1 H; 3ZIE A; 4DUZ H; 4LF5 H; 4DR4 H; 5LMN H; 3TTD A; 4DR1 H; 1J5E H; 3OTO H; 4HVZ A; 1AN7 A; 1I6U A; 4B8C D; 4GKJ H; 4EO0 A; 1XNR H; 4LF6 H; 4OX9 H; 1ODH A; 5BR8 H; 4OD6 A; 2LF0 A; 4JI2 H; 3P04 A; 3VTI A; 3EZJ A; 3GR5 A; 1FJG H; 3TTF A; 2HHH H; 4DV6 H; 3J7A K; 4DV0 H; 2UUA H; 4K0K H; 1IBK H; 4FBQ A; 4NXM H; 4LFB H; 4DV4 H; 4FCX A; 4X66 H; 4FBK A; 5A2Q W; 4YY3 H; 4X64 H; 4GKK H; 4DR2 H; 2E5L H; 5DT9 A; 3TSP A; 1XMO H; 3ZIH A; 4LF7 H; 3TSQ A; 3KDK A; 1I94 H;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
