The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
79
|
sequence length |
292
|
structure length |
292
|
Chain Sequence |
VMDLGTTTIVAGQGDFSAYNYGNNGANWPAPSPAQVGYISKGQRDVAYVNGDWEKPLLALWAQWANWGTTLYGYPSLPFPNYEFIWDIFDLPQADYNQFSLGDDRITAMNRAQNHQYPFPNNEGIPSWDRPKIDTFNGGVYTPAAAFAHYLTGKGKKMNFPIERLNIKPNVKAMPQFIGVLTSSPMGQTTVDFNVPYATAKDSWVAGNTVGEITLRIVGILVKSTSGQWSFRGEIRAYDDLYDFNPSNHRTETAEGMTRLGREVGQKFKDTTPYPIGIPGAIPVNISGRSHH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Functional and Structural Characterization of PaeM, a Colicin M-like Bacteriocin Produced by Pseudomonas aeruginosa.
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Pseudomonas aeruginosa
|
| molecule keywords |
phosphodiesterase
|
| total genus |
79
|
| structure length |
292
|
| sequence length |
292
|
| ec nomenclature | |
| pdb deposition date | 2012-07-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF14859 | Colicin_M | Colicin M |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | de novo design (two linked rop proteins) | de novo design (two linked rop proteins) | ||
| Mainly Beta | Beta Barrel | Porin | Porin |
#chains in the Genus database with same CATH superfamily 4N59 A; 4FZM A; 4N58 A; 4FZN A; 2XMX A; 2XTQ A; 3DA3 A; 4G76 A; 4G75 A; 2XTR A; 4FZL A; 3DA4 A; #chains in the Genus database with same CATH topology 2V6E A; 2FU2 A; 3NSG A; 3AJF A; 1YO7 A; 4JCH A; 2QGM A; 2A2C A; 4O1O A; 2J1N A; 5TIS O; 4AKR B; 5GTH O; 2RIO A; 4AYI D; 1GFQ A; 3BS0 A; 4E1S A; 5T5F A; 4KR8 A; 4RL9 A; 4Q9V A; 4O3X B; 4AS2 A; 5DL8 A; 5JDP A; 3HW9 A; 4RLC A; 3QRA A; 4FT6 A; 2A2D A; 2J4U P; 3A0B O; 3V8U A; 3AA7 B; 3O0E A; 1OPF A; 4UB6 O; 2CAZ B; 1GFN A; 2FGQ X; 1P4T A; 2OMF A; 4N59 A; 3LK3 A; 3AA1 A; 3PRN A; 3PF1 A; 1GFP A; 4K3B A; 4N75 A; 2AXT O; 1S5L O; 2JAE A; 3LK2 B; 6PRN A; 2FGR A; 3L0I A; 2MJF B; 3I9V 1; 4HFV A; 4O4U A; 2Y0K A; 1PRN A; 1SJ8 A; 1T16 A; 5DL7 A; 3AAA A; 3AAE A; 2IWV A; 1PHO A; 3SY9 A; 1QJ9 A; 2JMM A; 2KC0 A; 3DO9 A; 2Y2X A; 4AS3 A; 5H2F O; 4YZD A; 3PGU A; 4RJX A; 2BL8 A; 2ETD A; 4AYE C; 2IP6 A; 2R4O A; 3HOL A; 2MHL A; 2KXP A; 3UIT A; 2FUG 1; 4Z7H A; 5HGI A; 2W80 C; 2R8A A; 2R4N A; 1BXW A; 1IZN A; 4AYD C; 2MNH A; 5B66 O; 2GE4 A; 3QRC A; 2RAD A; 4AZL A; 3WI4 A; 2N2L A; 1ZHT A; 2Y7S A; 4D65 A; 3DWO X; 4FUV A; 3LJ1 A; 4FZN A; 1HXU A; 4D64 A; 2JB3 A; 4C00 A; 2QZG A; 1ZHY A; 4JCV E; 2F1C X; 5E79 O; 3VZW X; 2XE3 A; 2XE5 A; 4C4V B; 4OAU C; 4I1T A; 5G39 A; 2KDY A; 4RLB A; 4GF4 A; 3KP9 A; 4FSO A; 1QJP A; 4XNK A; 4GXT A; 2QTK A; 5DL5 A; 4N58 A; 4Z7G A; 2XE2 A; 3WI5 A; 2LHF A; 3LK4 1; 1QJ8 A; 4UB8 O; 2R88 A; 4AYM C; 2Y0H A; 1MPF A; 4GCP A; 5GTI O; 2WVP A; 1JQO A; 4AYN A; 2F1V A; 2F6M B; 4GHB A; 1GFM A; 2X9K A; 3AA0 A; 1T1L A; 3DWN A; 3TZG A; 3UPG A; 3KVD D; 3EMN X; 3T0S A; 5D5D A; 2X27 X; 2R89 A; 5DL6 A; 2ERV A; 3SZV A; 1HXX A; 3VA9 A; 4FQE A; 1W3S A; 4GCS A; 2YFB A; 2KKM A; 2K0L A; 3LJ0 A; 1ZHX A; 4CTD A; 2Y0L A; 2JBW A; 2M07 A; 4KRA A; 4FSP A; 3A0H O; 4KR4 A; 4LSI A; 3UU2 A; 3K19 A; 2WJQ A; 2YNK A; 3F4M A; 1U5K A; 4DWL A; 2F66 B; 4FOZ A; 3VZT X; 2KZ7 A; 4B61 A; 4AKR A; 3DZM A; 4NV2 A; 3VY8 X; 3DA3 A; 4O4X A; 3T24 A; 5AFU L; 4LSE A; 4FRX A; 3SY7 A; 4AUI A; 5KAF O; 4FZL A; 4PL4 A; 3RBH A; 4JFB A; 4O3Y A; 4LSH A; 5IYU A; 2ODJ A; 3VE2 A; 3IAM 1; 1HXT A; 4O49 A; 4N74 A; 4PL5 A; 3AA7 A; 2QSB A; 2XMX A; 3JTY A; 3FVV A; 1G90 A; 2YFA A; 2ZRR A; 3C5O A; 4U9C A; 1Q9F A; 4NV5 A; 3AA0 B; 2JB2 A; 5PRN A; 3JSB A; 2JQY A; 3T20 A; 2GSC A; 3LK3 B; 3AA1 B; 4BUM X; 4PJ0 O; 4O1P A; 5AFU K; 5G3A A; 1E54 A; 2K19 A; 3AA6 A; 4YZC A; 1BT9 A; 3JCU O; 2XG6 A; 4LSF A; 3SYB A; 1OSM A; 1MM4 A; 3FYX A; 3LK4 2; 4O3Z A; 3WU2 O; 5ADX L; 2XTR A; 4E1T A; 3PGR A; 3AAA B; 3AAE B; 3POX A; 3HWB A; 2LFU A; 3POR A; 2KZ7 B; 3SYS A; 2K4T A; 3FBV A; 4YZ9 A; 3A2S X; 2BL7 A; 2ZFG A; 2KXP B; 2R4L A; 4C69 X; 5B5E O; 4FMS A; 1IZN B; 4HEA 1; 5GV0 A; 3LJ2 A; 4Z3T A; 2HGK A; 3DA4 A; 3UAQ A; 2M06 A; 2R4P A; 2ZW3 A; 1TDP A; 2RLD A; 4XNL A; 2XTQ A; 2POR A; 3GP6 A; 3G7G A; 5ADX K; 4PUX A; 4PR7 A; 4C4V A; 1ORM A; 3BRZ A; 3FNB A; 1ZHZ A; 3PQU A; 4PL3 A; 3POQ A; 1MM5 A; 3AA6 B; 3IAS 1; 3SDJ A; 4AKM A; 1BH3 A; 2FEF A; 2N2M A; 5FVN A; 5LNK 1; 2P22 B; 4FES A; 4AFK A; 5EE2 A; 5G26 A; 3NJT A; 3SZD A; 4RJW A; 4FZM A; 2YPV A; 4G76 A; 3KZI O; 4D5U A; 3Q8D A; 1H6S 1; 2F1T A; 4OAV B; 2IWW A; 2W81 C; 4F4B A; 1THQ A; 4O3W A; 2E8G A; 4GCQ A; 3VZU X; 4U6R A; 2WJR A; 5G38 A; 2XE1 A; 2O4V A; 3POU A; 4QQ1 A; 7PRN A; 3LK2 A; 3P23 A; 1ZHW A; 1YS5 A; 3HOE A; 4K3C A; 4FRT A; 3BRY A; 2V1C C; 3B55 A; 4IL6 O; 8PRN A; 4G75 A; 3PQS A; 1GFO A; 3VE1 A; 2PRN A; 2ZLD A; 3PGS A; 2L1L B; 5KAI O; 3VY9 X; 2JB1 A; 1Q9G A; #chains in the Genus database with same CATH homology 2V6E A; 3NSG A; 3AJF A; 1YO7 A; 4JCH A; 4O1O A; 2A2C A; 2J1N A; 4AKR B; 2RIO A; 4AYI D; 1GFQ A; 4E1S A; 5T5F A; 4KR8 A; 4RL9 A; 4Q9V A; 4O3X B; 4AS2 A; 5DL8 A; 5JDP A; 3HW9 A; 4RLC A; 3QRA A; 4FT6 A; 2A2D A; 2J4U P; 3V8U A; 3AA7 B; 3O0E A; 1OPF A; 2CAZ B; 1GFN A; 2FGQ X; 1P4T A; 2OMF A; 4N59 A; 3LK3 A; 3AA1 A; 3PRN A; 1GFP A; 2JAE A; 3LK2 B; 6PRN A; 2FGR A; 3L0I A; 2MJF B; 3I9V 1; 4HFV A; 4O4U A; 2Y0K A; 1PRN A; 1SJ8 A; 5DL7 A; 3AAA A; 3AAE A; 1PHO A; 3SY9 A; 1QJ9 A; 2JMM A; 2KC0 A; 3DO9 A; 2Y2X A; 4AS3 A; 4YZD A; 4RJX A; 4AYE C; 2IP6 A; 3HOL A; 2MHL A; 2KXP A; 3UIT A; 2FUG 1; 4Z7H A; 5HGI A; 2W80 C; 1BXW A; 1IZN A; 4AYD C; 2MNH A; 2GE4 A; 3QRC A; 4AZL A; 3WI4 A; 2N2L A; 1ZHT A; 2Y7S A; 4D65 A; 4FUV A; 3LJ1 A; 4FZN A; 1HXU A; 4D64 A; 2JB3 A; 1ZHY A; 4JCV E; 3VZW X; 2XE3 A; 2XE5 A; 4OAU C; 4I1T A; 2KDY A; 4RLB A; 4GF4 A; 3KP9 A; 4FSO A; 1QJP A; 4XNK A; 4GXT A; 2QTK A; 5DL5 A; 4N58 A; 4Z7G A; 2XE2 A; 3WI5 A; 2LHF A; 3LK4 1; 1QJ8 A; 4AYM C; 2Y0H A; 1MPF A; 4GCP A; 4AYN A; 2F1V A; 2F6M B; 4GHB A; 1GFM A; 3AA0 A; 3TZG A; 3UPG A; 3KVD D; 3EMN X; 3T0S A; 5D5D A; 2X27 X; 5DL6 A; 2ERV A; 3SZV A; 1HXX A; 3VA9 A; 1W3S A; 4GCS A; 2YFB A; 2KKM A; 2K0L A; 3LJ0 A; 1ZHX A; 2Y0L A; 2M07 A; 4KRA A; 4FSP A; 4KR4 A; 4LSI A; 3UU2 A; 3K19 A; 2YNK A; 3F4M A; 1U5K A; 4DWL A; 2F66 B; 4FOZ A; 3VZT X; 2KZ7 A; 4B61 A; 4AKR A; 4NV2 A; 3VY8 X; 3DA3 A; 4O4X A; 3T24 A; 5AFU L; 4LSE A; 4FRX A; 3SY7 A; 4AUI A; 4FZL A; 4PL4 A; 3RBH A; 4JFB A; 4O3Y A; 4LSH A; 5IYU A; 2ODJ A; 3VE2 A; 3IAM 1; 1HXT A; 4O49 A; 4PL5 A; 3AA7 A; 2XMX A; 3JTY A; 1G90 A; 2YFA A; 2ZRR A; 3C5O A; 4U9C A; 1Q9F A; 4NV5 A; 3AA0 B; 2JB2 A; 5PRN A; 3JSB A; 3T20 A; 3LK3 B; 3AA1 B; 4BUM X; 5AFU K; 4O1P A; 1E54 A; 2K19 A; 3AA6 A; 4YZC A; 1BT9 A; 2XG6 A; 4LSF A; 3SYB A; 1OSM A; 1MM4 A; 3FYX A; 3LK4 2; 4O3Z A; 5ADX L; 2XTR A; 4E1T A; 3AAA B; 3AAE B; 3POX A; 3HWB A; 2LFU A; 3POR A; 2KZ7 B; 3SYS A; 2K4T A; 3FBV A; 4YZ9 A; 3A2S X; 2ZFG A; 2KXP B; 4C69 X; 4FMS A; 1IZN B; 4HEA 1; 5GV0 A; 3LJ2 A; 4Z3T A; 3DA4 A; 3UAQ A; 2M06 A; 4XNL A; 2XTQ A; 2POR A; 3GP6 A; 3G7G A; 5ADX K; 4PUX A; 1ORM A; 1ZHZ A; 3PQU A; 4PL3 A; 3POQ A; 1MM5 A; 3AA6 B; 3IAS 1; 3SDJ A; 4AKM A; 1BH3 A; 2N2M A; 5FVN A; 5LNK 1; 2P22 B; 4FES A; 4AFK A; 5EE2 A; 5G26 A; 3SZD A; 4RJW A; 4FZM A; 2YPV A; 4G76 A; 4D5U A; 3Q8D A; 1H6S 1; 2F1T A; 4OAV B; 2W81 C; 4F4B A; 1THQ A; 4O3W A; 2E8G A; 4GCQ A; 3VZU X; 4U6R A; 2XE1 A; 2O4V A; 3POU A; 4QQ1 A; 7PRN A; 3LK2 A; 3P23 A; 1ZHW A; 1YS5 A; 3HOE A; 4FRT A; 2V1C C; 8PRN A; 4G75 A; 3PQS A; 1GFO A; 3VE1 A; 2PRN A; 2ZLD A; 2L1L B; 3VY9 X; 2JB1 A; 1Q9G A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
