The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
68
|
sequence length |
291
|
structure length |
285
|
Chain Sequence |
AVTTRAEALTIPAVLRARNLLSTTVARTPLVCDGTLPPFVPVAAPPGAATMQTPFHRMLATADDLLFNGVACWALDRDESGTCIGAIHIPLDTWQIEENTVRVNGKAVDPMEVCIFVGIHGGLLTHASETFTDARNLVRAAARVAQNPAALIELRQTNNAQLSPDDVDRIINGYVAARRGRNSGVGFSSSGLEVHEHEMAKENLLIEGRNAAAVDVARAMNVPAAFIDATVGQNAASRMIELVTFGVEPLMSAIEARLNQPDMHADHLANPLKFDPAALLDAIPT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The Crystal Structure of a HK97 Family Phage Portal Protein from Corynebacterium diphtheriae to 2.9A
rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Corynebacterium diphtheriae
|
| molecule keywords |
HK97 Family Phage Portal Protein
|
| total genus |
68
|
| structure length |
285
|
| sequence length |
291
|
| chains with identical sequence |
B, C
|
| ec nomenclature | |
| pdb deposition date | 2009-10-23 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF04860 | Phage_portal | Phage portal protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak; Chain:A; Domain 2 | Substrate Binding Domain Of Dnak; Chain:A; Domain 2 | ||
| Mainly Beta | Beta Barrel | Upper collar protein gp10 (connector protein) fold | Upper collar protein gp10 (connector protein) fold | ||
| Alpha Beta | 2-Layer Sandwich | Arylsulfatase, C-terminal domain | Arylsulfatase, C-terminal domain |
#chains in the Genus database with same CATH superfamily 3KDR A; #chains in the Genus database with same CATH topology 4HY2 A; 1DKY A; 1E3C P; 3RQ7 A; 4KIK B; 1SUF A; 4HY9 A; 1WDZ A; 2V0O A; 4IM2 A; 1U00 A; 2CE4 A; 4EZX A; 3VKH A; 5TKY A; 1Q4O A; 3FVH A; 4LKL A; 1ZLZ A; 3RN4 A; 1O7D C; 1WB8 A; 1I49 A; 1SU7 A; 1F34 B; 2QZU A; 4WPC A; 4O56 A; 3D52 A; 1Q4K A; 4I1Q A; 1GNT A; 1YWM A; 3EJQ A; 4NK7 A; 3DX4 A; 2ADQ B; 4H8S A; 2I9Z A; 1AP5 A; 3Q0K A; 3QVN A; 3P36 A; 4PO2 A; 1QNM A; 3RPM A; 1AR5 A; 4H5X A; 4FZP A; 3RV1 A; 2WYI A; 2E50 A; 3PLT A; 3LMF A; 3B52 X; 3FS3 A; 3EVK A; 2X5C A; 3CZN A; 4HR1 A; 5J19 A; 1VAR A; 3D2E A; 3CZS A; 4M0M A; 4UDX X; 2EX3 B; 3BVT A; 4E4E A; 1VEW A; 3I01 A; 4R5L A; 3KKY A; 4JWD A; 3UIT A; 3C7N A; 1AUK A; 1I4L A; 1BSM A; 4YYP A; 3BVX A; 4EZZ A; 4DYL A; 1GN9 A; 1DKZ A; 4RS6 A; 4E81 A; 3ABH A; 4F01 A; 4AVM A; 4EZY A; 2YL8 A; 1B06 A; 4IW0 A; 5C5B B; 1E33 P; 2N3K A; 2RAI A; 2YL9 A; 1UMW A; 4JWI A; 1FOU A; 3AK2 A; 3QNI A; 5FLE X; 1HDH A; 2C08 A; 2FYV A; 3SYV A; 4AZ7 A; 3OWG A; 5E84 A; 4NKB A; 1ZUQ A; 1WB7 A; 2VKZ G; 3DPO A; 3L3P A; 1I0H A; 3CKD A; 3KDR A; 2QKW A; 4IWO A; 2OJX A; 3P35 A; 4YIP A; 3B51 X; 4N7Z A; 2ND1 A; 3HIH A; 3QA8 A; 3AK3 A; 1ZWW A; 4YIO A; 1AVM A; 4RCP A; 1N0J A; 1R33 A; 3CAZ A; 3EJU A; 3DDG A; 1FSU A; 3OHX M; 4AZC A; 2QKA A; 5KBP A; 2F1B A; 4N7V A; 4X9W A; 2CDY A; 3QE6 A; 1MJG A; 4XB0 A; 4J7B B; 1IXB A; 4HCO A; 1SU6 A; 3I04 A; 2Q13 A; 1TQU A; 4ATM A; 2JNS A; 3ER9 B; 5DAY A; 3A98 A; 2D1L A; 4NQI A; 1ZYL A; 3VEB A; 2QFF A; 1PL4 A; 3ZED A; 4NSW A; 4JYY A; 3ED4 A; 3QWE A; 3T49 A; 2Q12 A; 1E9V A; 1X03 A; 3D4Z A; 3F7W A; 4WHK A; 4AZB A; 3DC5 A; 1P7G A; 4C7U A; 5LHZ A; 1F32 A; 2Z8Y A; 3P2W A; 4JWC A; 4X9V A; 3D51 A; 3CVR A; 3BUI A; 4AZ5 A; 4X9R A; 3D50 A; 3RV0 A; 1PS3 A; 4CXS A; 4EZR A; 2PY6 A; 4HYB A; 3CV5 A; 2EWF A; 3T46 A; 2RT6 A; 1MSD A; 2N19 A; 2P4K A; 2MI7 A; 2ND0 A; 3HAJ A; 4JZG A; 1N2K A; 4HR1 B; 2UV8 G; 3HIK A; 2ALW A; 2ELB A; 2GAF D; 1JNB A; 2EFL A; 1MNG A; 2ADP A; 1QX1 A; 3I39 X; 2D4C A; 1ZSP A; 3OK8 A; 2OZN B; 3OT7 A; 4EZO A; 3DX3 A; 3LVT A; 1JR9 A; 2ZXQ A; 1BT8 A; 4AZH A; 2OBM A; 1O7D B; 2YL5 A; 2GDS A; 3LM3 A; 4G6Q A; 3CEI A; 3O3N B; 1P49 A; 4F6E A; 4JNF A; 4JWE A; 4DCN C; 2OW6 A; 2WYH A; 4LKM A; 3LXQ A; 2O0I 1; 4JLC A; 2IA9 A; 3T48 A; 4JN4 A; 3ACO A; 4GUN A; 1EM1 A; 3HAI A; 4O6W A; 4H71 A; 4G7N A; 4E9D A; 2YLL A; 1JQK A; 3BFR A; 3K9S A; 2F7P A; 2Z0O A; 1TQW A; 3LSU A; 1TQV A; 1H5W A; 4FZO A; 4CYR A; 1TQS A; 2F1A A; 1XRE A; 1R5E A; 2FIC A; 2WIN M; 2YI9 A; 3C3S A; 4IM3 A; 3BUB A; 2YIB A; 4FFK A; 3BZI A; 2YIV X; 4E9C A; 1SU8 A; 1I4D A; 1UPX A; 4D8J A; 4EZS A; 1JA8 A; 4E67 A; 3DX2 A; 5FIG A; 3HAH A; 2F7O A; 3MDS A; 3I2W A; 3T4A G; 1OA1 A; 1MA1 A; 1URU A; 3EJP A; 3C5L A; 3BUQ A; 3HFD A; 4H6I A; 1R34 A; 1E1Z P; 2NCZ A; 2GA9 D; 4R5K A; 3Q84 A; 4AZC B; 1E2S P; 2LM0 A; 3DX0 A; 1OA0 A; 2RAK A; 2Z0V A; 3SOG A; 1X04 A; 1XUQ A; 5A9G A; 1GN6 A; 1GN2 A; 3GYV A; 3BVV A; 4B9Q A; 2F7Q A; 1GNL A; 1HWW A; 4KIK A; 1XDC A; 1SZX A; 4JNE A; 3BLB A; 3EJS A; 4FDI A; 1E2T A; 3BUD A; 4EZT A; 2YL6 A; 4CYS A; 3G9G A; 1Y2O A; 4R5I A; 1GN3 A; 2PMR A; 3T47 A; 4AZI A; 4DFW A; 3KAV A; 2YI8 A; 4EZQ A; 1A87 A; 2F18 A; 3L3O M; 3P2Z A; 1AR4 A; 4JZ2 A; 2YIA A; 4O9W A; 1PM9 A; 4IWP A; 1HTY A; 1GN4 A; 2JNK A; 3DYT A; 4X9Q A; 4R5G A; 2I9X A; 2AW9 A; 3P37 A; 1E2U A; 4BNE A; 2KHO A; 4BR6 A; 3BVW A; 1QWN A; 4EZU A; 2Z0N A; 3DDF A; 4IM0 A; 4IWQ A; 3FD9 A; 1N2L A; 1LUW A; 4H6H A; 3D4Y A; 3D2F A; 2X3X A; 4WHH A; 2EFK A; 1OAO A; 1KKC A; 3ER8 C; 5DMV C; 2X3W A; 4AKV A; 1LQ7 A; 1BS3 A; 2QXL A; 3EJR A; 1EN5 A; 1MMM A; 4WPE A; 4FZS A; 5AG2 A; 2OBL A; 3O3M B; 2OW7 A; 4CXU A; 5C5B A; 1I4T A; 3M3W A; 4HAB A; 1TQT A; 3EJT A; 1IJG A; 1HXK A; 3DX1 A; 1I08 A; 2OGQ A; 5DNJ A; 4EZP A; 2RCV A; 3GYW A; 4NPH A; 1EN4 A; 2GF4 A; 4FDJ A; 3B53 X; 4FM3 A; 5DMS A; 3C3T A; 2F7R A; 3BVU A; 4EZN A; 1D5N A; 3DPP A; 3BUP A; 5AJ9 A; 3QNJ A; 4AZ6 A; 2X3V A; 3LLL A; 3AK1 A; 3P34 A; 3ERC C; 3DC6 A; 3VEA A; 4WHL A; 3HMJ G; 3TJT A; 4AZG A; 2OO2 A; 1IDS A; 3Q1I A; 1DKX A; 1ZTE A; 4UDY X; 1LUV A; 4F00 A; 3KAW A; 4R5J A; 4CXK A; 1AP6 A; 3DPQ A; 1EN6 A; 3O3O B; 1IX9 A; 2LXY A; 2YLA A; 1XIL A; 1QWU A; 1E1D A; 2QKC A; 2RAJ A; 4EZW A; 4N9J A; 4E3C A; 4EZV A; 1W9M A; 1Y67 A; 2YKT A; 3GI7 A; 4JL9 A; 1N0N A; #chains in the Genus database with same CATH homology 4EZU A; 1DKY A; 4YIP A; 1E3C P; 4KIK B; 3LXQ A; 1SUF A; 4IM0 A; 4IWQ A; 3FD9 A; 1N2L A; 4JLC A; 3B51 X; 4HY9 A; 4N7Z A; 3T48 A; 4JN4 A; 2ND1 A; 1LUW A; 4IM2 A; 3QA8 A; 4GUN A; 1EM1 A; 1U00 A; 4H6H A; 3AK3 A; 4YIO A; 1AVM A; 2CE4 A; 4EZX A; 3VKH A; 4G7N A; 1JQK A; 5TKY A; 3D2F A; 1N0J A; 3BFR A; 3K9S A; 1ZLZ A; 1FSU A; 3OHX M; 2QKA A; 3RN4 A; 1WB8 A; 4N7V A; 1SU7 A; 3LSU A; 4CYR A; 2CDY A; 2QZU A; 1OAO A; 1XRE A; 1KKC A; 3ER8 C; 1MJG A; 2YI9 A; 2WIN M; 3C3S A; 4IM3 A; 2YIB A; 4FFK A; 1GNT A; 1BS3 A; 2QXL A; 2YIV X; 1IXB A; 1EN5 A; 1MMM A; 1SU8 A; 4NK7 A; 1SU6 A; 1UPX A; 3I04 A; 2ADQ B; 4D8J A; 4EZS A; 1AP5 A; 5AG2 A; 3QVN A; 2OBL A; 4PO2 A; 5DAY A; 2JNS A; 3ER9 B; 1JA8 A; 1QNM A; 3A98 A; 5FIG A; 3O3M B; 1AR5 A; 3MDS A; 4CXU A; 3RV1 A; 1ZYL A; 2E50 A; 3VEB A; 2QFF A; 3T4A G; 1PL4 A; 3LMF A; 3B52 X; 1OA1 A; 3ZED A; 3FS3 A; 1MA1 A; 3EVK A; 2X5C A; 4HR1 A; 4JYY A; 3ED4 A; 3T49 A; 1VAR A; 3HFD A; 1I08 A; 3D2E A; 4M0M A; 4EZP A; 4H6I A; 2RCV A; 1E9V A; 4UDX X; 3GYW A; 2EX3 B; 4NPH A; 2NCZ A; 1EN4 A; 2GA9 D; 1E1Z P; 4R5K A; 4E4E A; 1VEW A; 3I01 A; 3F7W A; 1E2S P; 4FDJ A; 4R5L A; 3KKY A; 4JWD A; 3DC5 A; 2LM0 A; 3UIT A; 1OA0 A; 3B53 X; 3C7N A; 1P7G A; 4C7U A; 4FM3 A; 2Z8Y A; 4JWC A; 3C3T A; 1XUQ A; 5A9G A; 1GN6 A; 1AUK A; 1GN2 A; 1BSM A; 3GYV A; 4EZZ A; 4EZN A; 1D5N A; 3DPP A; 4B9Q A; 3RV0 A; 1GNL A; 5AJ9 A; 3QNJ A; 4CXS A; 1GN9 A; 4KIK A; 1DKZ A; 1XDC A; 4EZR A; 3AK1 A; 4E81 A; 3ERC C; 2PY6 A; 4HYB A; 1SZX A; 3DC6 A; 4JNE A; 2EWF A; 4FDI A; 4F01 A; 3VEA A; 3T46 A; 1E2T A; 4EZY A; 2RT6 A; 4EZT A; 1B06 A; 3HMJ G; 1MSD A; 4IW0 A; 3TJT A; 2P4K A; 4CYS A; 1IDS A; 1E33 P; 2N3K A; 4JWI A; 2ND0 A; 1DKX A; 4R5I A; 1GN3 A; 4JZG A; 1N2K A; 1ZTE A; 4HR1 B; 3T47 A; 3AK2 A; 2UV8 G; 4UDY X; 3KAV A; 5FLE X; 1LUV A; 2YI8 A; 3KAW A; 4F00 A; 1HDH A; 4R5J A; 4EZQ A; 2GAF D; 2ADP A; 1MNG A; 4CXK A; 3I39 X; 3DPQ A; 1AP6 A; 3L3O M; 3OWG A; 3O3O B; 1EN6 A; 1IX9 A; 1ZSP A; 1AR4 A; 1XIL A; 3OT7 A; 5E84 A; 2YIA A; 4EZO A; 1JR9 A; 1BT8 A; 4JZ2 A; 1E1D A; 1PM9 A; 4IWP A; 2OBM A; 2QKC A; 1GN4 A; 4NKB A; 4EZW A; 1ZUQ A; 2GDS A; 4N9J A; 3LM3 A; 4X9Q A; 4G6Q A; 4R5G A; 4E3C A; 1WB7 A; 2AW9 A; 2VKZ G; 3DPO A; 1W9M A; 4EZV A; 1E2U A; 1Y67 A; 3CEI A; 3GI7 A; 2KHO A; 4JL9 A; 3O3N B; 1I0H A; 1N0N A; 3KDR A; 4BR6 A; 4F6E A; 1P49 A; 4JNF A; 4JWE A; 4IWO A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
