1A8O | Genus

Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	22
sequence length	70
structure length	70
Chain Sequence	MDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Viral protein
source organism	Human immunodeficiency virus 1
publication title	Structure of the carboxyl-terminal dimerization domain of the HIV-1 capsid protein. pubmed doi rcsb
molecule keywords	HIV CAPSID
total genus	22
structure length	70
sequence length	70
ec nomenclature	ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date	1998-03-27

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1200.30	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A	1a8oA00

3DTJA 1EOQA 4XFXA 4U0CA 5DCKA 4XROA 2ONTA 3DS0A 2JYLA 4XFZA 1AUMA 2XXMA 3G1IA 3LRYA 4U0FA 3DPHA 2L6EA 3G26A 3DS4A 2JO0A 3G21A 1A43A 2XT1A 3H47A 4WYMA 3VRLC 2EIAA 3DS2A 2JYGA 1E6JP 2M8PA 4COPA 3DS5A 5JPAA 4QNBA 2XV6A 3G0VA 3MGEA 2M8LA 3G29A 4XFYA 3H4EA 5I4TG 3DS3A 1A8OA 1BAJA 4U0AA 5HGLA 4PH0A 1D1DA 2LF4A 3NTEA 3P05A 4COCA 5HGOA 4IPYA 2BUOA 5HGMA 3DS1A 4M0IA 3G28A 4U0BA 3G1GA 2KODA 1QRJA 2M8NA 4PH1A 1EIAA 4U0EA 4XRQA 4U0DA 5HGNA
chains in the Genus database with same CATH superfamily

1VQ7P 3U43A 2JGPA 3DPHA 4H2YC 5CZDB 3CCEP 2FQ0A 2MR7A 2PENA 1VQKP 2EHTA 2LMLA 1Q81Q 2FVEA 5F2NA 2KODA 2AFEA 1T8KA 4GR2A 2PEMA 1EOQA 3G71P 3CC2P 2OTJP 1K30A 2QNWA 4GR6A 2K2QA 1YJ9P 5BS2A 2K0XA 4QNBA 2CWOA 1IUQA 2MVVA 1CEIA 4COCA 4IPYA 4H2WC 1RO2A 1K9MQ 3B5IA 2AVAA 5EW5E 2XXMA 1VQ5P 3G26A 3DS4A 1VQNP 2E1MA 1N8RQ 2K94A 3WBHA 3CCJP 1YI2P 5HGMA 4U0DA 3CCMP 1VQMP 4XROA 3CE7A 1UJZA 2GZFA 1OR5A 2FADA 2MVUA 3DS5A 4XFYA 5I4TG 1A8OA 3CMAP 4PH0A 3CCQP 2K5XA 2LKIA 2P9XA 2N6YA 4U0BA 2N98A 5KP8B 4PXHB 2KG8A 1AF8A 3G4SP 2JO0A 1A43A 2XT1A 1ZNVA 3VRLC 2GDXA 2FACA 1IMQA 3HYBA 3DS3A 4QKOA 2AFDA 3CD6P 1VQ4P 2BHVA 1VQLP 4U0CA 1K8AQ 2GYKA 2CG5B 1HY8A 2CNRA 2X2BA 2L6EA 2JU1A 4IZ6A 2GZJA 2Z45A 3G0VA 7CEIA 2M8LA 3CMEP 3H0DA 1D1DA 4F37A 3EJBA 2MR8A 4UHPB 1W2BO 2WPTA 2Z46A 1AUMA 1GXHA 1M74A 2PEQA 2JAZA 2JQ4A 2DGYA 1E6JP 3MGEA 3CCVP 2MY5A 1FR2A 2LF4A 3NTEA 2K92A 2KGEA 2VLNA 1YIJP 1EIAA 2KGAA 5F2OA 1KC8Q 3GKLC 1M1KQ 2FQ1A 1M6NA 3DS2A 2LTEA 2XV6A 2OTLP 1BAJA 3E2DA 5HGLA 2GDYA 3M1MA 1K73Q 3I55P 1NQ4A 2M8NA 2JB0A 1QVFO 4XRQA 5KP6B 5HGNA 2LOLA 4CA3A 3RG2A 4COPA 1GPJA 1L0HA 2FAEA 2KOQA 2PEIA 1IMPA 2BUOA 2K93A 2LL8A 5HV8A 3RG6C 1BXIA 2JU2A 2PEOA 2XZ0D 1KLPA 2JBGA 2EIAA 2L22A 2VLPA 1Z6MA 2M5RA 1VHNA 1M90Q 1DV5A 4BPFA 3DS1A 2MD9A 3EJEA 1QRJA 4PH1A 2GZIA 1EMVA 2KGDA 3CCLP 1S72P 2JYLA 1KQSO 4BPHA 3CC7P 1E0HA 3Q20A 2AF8A 3G29A 2NO8A 2GZGA 2EG5A 3GJNA 1Q7YQ 3OW2O 1RO0A 3P05A 1JJ2O 2KG6A 3G28A 2PEJA 2VLQA 3DTJA 1NJIQ 3B4QA 2PEKA 2N6ZA 1AYIA 3LMOA 2XZ1C 2CQ8A 2FVAA 2DNWA 1VQ6P 5EJDA 2LIWA 2FHSC 1YHQP 2KOOA 2OARA 2L9FA 2PY8A 1HQBA 2VLOA 2KR5A 5KP7B 5DCKA 2ONTA 2Z44A 1L0IA 1VQ9P 2EHSA 1KD1Q 2K0DX 1VQ8P 5JPAA 2KG9A 3EJDA 3CCSP 3CCUP 2QEXP 1YJNP 5F2KA 1X3OA 2N50A 4XFZA 3G1IA 3LRYA 4PWVB 4U0FA 2LIUA 1YJWP 3H47A 3G21A 2ROQA 4WYMA 2JYGA 2GZEA 1GXGA 1VQPP 1M6EX 1VQOP 3CC4P 4U0AA 5HGOA 1Q82Q 1F80D 4M0IA 2ERHA 4HKGA 3G1GA 4BPGA 5HVCA 4DG9A 1VKUA 2L0QA 4XFXA 1Q86Q 3DS0A 2N5HA 2EFJA 5BS1A 2KWLA 2KGCA 3I56P 2KOPA 2L4BA 3H4EA 1ACPA 1YITP 2FQ2A 1QVGO 2KW2A 4R0MA 2PNGA 1RNIA 2QA4P 3CPWO 4U0EA 3CCRP 3NY7B 2K0YA 3GZMA 4MRTC 1DNYA 3HZQA 2KOSA 4NEOA 2GDWA 4H2XC 2LPKA 2M8PA 2MF4A 3CXCO 1ZMBA 2KORA 2FVFA 2CGQA 2N5IA 2VSQA 3GZLA 1MZ8A 1UNKA 3G6EP
chains in the Genus database with same CATH topology

5DCKA 1VQ7P 2ONTA 2Z44A 3DPHA 3G4SP 1VQ9P 3CCEP 2JO0A 1A43A 2XT1A 3VRLC 1KD1Q 1VQ8P 4COPA 5JPAA 3HYBA 2PENA 3DS3A 1VQKP 2PEIA 1Q81Q 3CCSP 2BUOA 3CCUP 5F2NA 2QEXP 1VQ4P 2BHVA 3CD6P 2KODA 1YJNP 5F2KA 4GR2A 3RG6C 2PEMA 1VQLP 1EOQA 4U0CA 3G71P 1K8AQ 3CC2P 4XFZA 3G1IA 3LRYA 2PEOA 4U0FA 2OTJP 2L6EA 1K30A 1YJWP 3H47A 3G21A 4WYMA 4GR6A 2EIAA 2JYGA 1YJ9P 2Z45A 5BS2A 4QNBA 3G0VA 2M8LA 1VQPP 1M90Q 1M6EX 2CWOA 1VQOP 1IUQA 3CC4P 3CMEP 4U0AA 3H0DA 1D1DA 4COCA 5HGOA 4IPYA 1Q82Q 3DS1A 4M0IA 1RO2A 3G1GA 1QRJA 1K9MQ 4PH1A 3B5IA 1W2BO 4XFXA 1Q86Q 3CCLP 2Z46A 1S72P 3DS0A 2JYLA 1AUMA 2XXMA 1KQSO 1VQ5P 1M74A 2PEQA 3G26A 3CC7P 3DS4A 1VQNP 2EFJA 5BS1A 2E1MA 3Q20A 2DGYA 1E6JP 3I56P 1N8RQ 3MGEA 3WBHA 3CCVP 3CCJP 3G29A 1YI2P 3H4EA 1YITP 1QVGO 1Q7YQ 2EG5A 3OW2O 1RO0A 2LF4A 3NTEA 3P05A 1JJ2O 5HGMA 1RNIA 3G28A 2QA4P 3CPWO 1YIJP 1EIAA 4U0EA 4U0DA 5F2OA 3CCRP 2PEJA 3DTJA 3CCMP 1VQMP 1NJIQ 4XROA 2PEKA 1KC8Q 3HZQA 1M1KQ 1M6NA 3DS2A 2M8PA 3DS5A 2XV6A 3CXCO 4XFYA 5I4TG 1ZMBA 2OTLP 1A8OA 1VQ6P 1BAJA 3CMAP 3E2DA 5HGLA 4PH0A 3CCQP 3M1MA 1YHQP 1K73Q 3I55P 2OARA 2P9XA 4U0BA 2PY8A 2M8NA 1QVFO 4XRQA 3G6EP 5HGNA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3DTJ A;  1EOQ A;  4XFX A;  4U0C A;  5DCK A;  4XRO A;  2ONT A;  3DS0 A;  2JYL A;  4XFZ A;  1AUM A;  2XXM A;  3G1I A;  3LRY A;  4U0F A;  3DPH A;  2L6E A;  3G26 A;  3DS4 A;  2JO0 A;  3G21 A;  1A43 A;  2XT1 A;  3H47 A;  4WYM A;  3VRL C;  2EIA A;  3DS2 A;  2JYG A;  1E6J P;  2M8P A;  4COP A;  3DS5 A;  5JPA A;  4QNB A;  2XV6 A;  3G0V A;  3MGE A;  2M8L A;  3G29 A;  4XFY A;  3H4E A;  5I4T G;  3DS3 A;  1A8O A;  1BAJ A;  4U0A A;  5HGL A;  4PH0 A;  1D1D A;  2LF4 A;  3NTE A;  3P05 A;  4COC A;  5HGO A;  4IPY A;  2BUO A;  5HGM A;  3DS1 A;  4M0I A;  3G28 A;  4U0B A;  3G1G A;  2KOD A;  1QRJ A;  2M8N A;  4PH1 A;  1EIA A;  4U0E A;  4XRQ A;  4U0D A;  5HGN A; 
#chains in the Genus database with same CATH topology
 1VQ7 P;  3U43 A;  2JGP A;  3DPH A;  4H2Y C;  5CZD B;  3CCE P;  2FQ0 A;  2MR7 A;  2PEN A;  1VQK P;  2EHT A;  2LML A;  1Q81 Q;  2FVE A;  5F2N A;  2KOD A;  2AFE A;  1T8K A;  4GR2 A;  2PEM A;  1EOQ A;  3G71 P;  3CC2 P;  2OTJ P;  1K30 A;  2QNW A;  4GR6 A;  2K2Q A;  1YJ9 P;  5BS2 A;  2K0X A;  4QNB A;  2CWO A;  1IUQ A;  2MVV A;  1CEI A;  4COC A;  4IPY A;  4H2W C;  1RO2 A;  1K9M Q;  3B5I A;  2AVA A;  5EW5 E;  2XXM A;  1VQ5 P;  3G26 A;  3DS4 A;  1VQN P;  2E1M A;  1N8R Q;  2K94 A;  3WBH A;  3CCJ P;  1YI2 P;  5HGM A;  4U0D A;  3CCM P;  1VQM P;  4XRO A;  3CE7 A;  1UJZ A;  2GZF A;  1OR5 A;  2FAD A;  2MVU A;  3DS5 A;  4XFY A;  5I4T G;  1A8O A;  3CMA P;  4PH0 A;  3CCQ P;  2K5X A;  2LKI A;  2P9X A;  2N6Y A;  4U0B A;  2N98 A;  5KP8 B;  4PXH B;  2KG8 A;  1AF8 A;  3G4S P;  2JO0 A;  1A43 A;  2XT1 A;  1ZNV A;  3VRL C;  2GDX A;  2FAC A;  1IMQ A;  3HYB A;  3DS3 A;  4QKO A;  2AFD A;  3CD6 P;  1VQ4 P;  2BHV A;  1VQL P;  4U0C A;  1K8A Q;  2GYK A;  2CG5 B;  1HY8 A;  2CNR A;  2X2B A;  2L6E A;  2JU1 A;  4IZ6 A;  2GZJ A;  2Z45 A;  3G0V A;  7CEI A;  2M8L A;  3CME P;  3H0D A;  1D1D A;  4F37 A;  3EJB A;  2MR8 A;  4UHP B;  1W2B O;  2WPT A;  2Z46 A;  1AUM A;  1GXH A;  1M74 A;  2PEQ A;  2JAZ A;  2JQ4 A;  2DGY A;  1E6J P;  3MGE A;  3CCV P;  2MY5 A;  1FR2 A;  2LF4 A;  3NTE A;  2K92 A;  2KGE A;  2VLN A;  1YIJ P;  1EIA A;  2KGA A;  5F2O A;  1KC8 Q;  3GKL C;  1M1K Q;  2FQ1 A;  1M6N A;  3DS2 A;  2LTE A;  2XV6 A;  2OTL P;  1BAJ A;  3E2D A;  5HGL A;  2GDY A;  3M1M A;  1K73 Q;  3I55 P;  1NQ4 A;  2M8N A;  2JB0 A;  1QVF O;  4XRQ A;  5KP6 B;  5HGN A;  2LOL A;  4CA3 A;  3RG2 A;  4COP A;  1GPJ A;  1L0H A;  2FAE A;  2KOQ A;  2PEI A;  1IMP A;  2BUO A;  2K93 A;  2LL8 A;  5HV8 A;  3RG6 C;  1BXI A;  2JU2 A;  2PEO A;  2XZ0 D;  1KLP A;  2JBG A;  2EIA A;  2L22 A;  2VLP A;  1Z6M A;  2M5R A;  1VHN A;  1M90 Q;  1DV5 A;  4BPF A;  3DS1 A;  2MD9 A;  3EJE A;  1QRJ A;  4PH1 A;  2GZI A;  1EMV A;  2KGD A;  3CCL P;  1S72 P;  2JYL A;  1KQS O;  4BPH A;  3CC7 P;  1E0H A;  3Q20 A;  2AF8 A;  3G29 A;  2NO8 A;  2GZG A;  2EG5 A;  3GJN A;  1Q7Y Q;  3OW2 O;  1RO0 A;  3P05 A;  1JJ2 O;  2KG6 A;  3G28 A;  2PEJ A;  2VLQ A;  3DTJ A;  1NJI Q;  3B4Q A;  2PEK A;  2N6Z A;  1AYI A;  3LMO A;  2XZ1 C;  2CQ8 A;  2FVA A;  2DNW A;  1VQ6 P;  5EJD A;  2LIW A;  2FHS C;  1YHQ P;  2KOO A;  2OAR A;  2L9F A;  2PY8 A;  1HQB A;  2VLO A;  2KR5 A;  5KP7 B;  5DCK A;  2ONT A;  2Z44 A;  1L0I A;  1VQ9 P;  2EHS A;  1KD1 Q;  2K0D X;  1VQ8 P;  5JPA A;  2KG9 A;  3EJD A;  3CCS P;  3CCU P;  2QEX P;  1YJN P;  5F2K A;  1X3O A;  2N50 A;  4XFZ A;  3G1I A;  3LRY A;  4PWV B;  4U0F A;  2LIU A;  1YJW P;  3H47 A;  3G21 A;  2ROQ A;  4WYM A;  2JYG A;  2GZE A;  1GXG A;  1VQP P;  1M6E X;  1VQO P;  3CC4 P;  4U0A A;  5HGO A;  1Q82 Q;  1F80 D;  4M0I A;  2ERH A;  4HKG A;  3G1G A;  4BPG A;  5HVC A;  4DG9 A;  1VKU A;  2L0Q A;  4XFX A;  1Q86 Q;  3DS0 A;  2N5H A;  2EFJ A;  5BS1 A;  2KWL A;  2KGC A;  3I56 P;  2KOP A;  2L4B A;  3H4E A;  1ACP A;  1YIT P;  2FQ2 A;  1QVG O;  2KW2 A;  4R0M A;  2PNG A;  1RNI A;  2QA4 P;  3CPW O;  4U0E A;  3CCR P;  3NY7 B;  2K0Y A;  3GZM A;  4MRT C;  1DNY A;  3HZQ A;  2KOS A;  4NEO A;  2GDW A;  4H2X C;  2LPK A;  2M8P A;  2MF4 A;  3CXC O;  1ZMB A;  2KOR A;  2FVF A;  2CGQ A;  2N5I A;  2VSQ A;  3GZL A;  1MZ8 A;  1UNK A;  3G6E P; 
#chains in the Genus database with same CATH homology
 5DCK A;  1VQ7 P;  2ONT A;  2Z44 A;  3DPH A;  3G4S P;  1VQ9 P;  3CCE P;  2JO0 A;  1A43 A;  2XT1 A;  3VRL C;  1KD1 Q;  1VQ8 P;  4COP A;  5JPA A;  3HYB A;  2PEN A;  3DS3 A;  1VQK P;  2PEI A;  1Q81 Q;  3CCS P;  2BUO A;  3CCU P;  5F2N A;  2QEX P;  1VQ4 P;  2BHV A;  3CD6 P;  2KOD A;  1YJN P;  5F2K A;  4GR2 A;  3RG6 C;  2PEM A;  1VQL P;  1EOQ A;  4U0C A;  3G71 P;  1K8A Q;  3CC2 P;  4XFZ A;  3G1I A;  3LRY A;  2PEO A;  4U0F A;  2OTJ P;  2L6E A;  1K30 A;  1YJW P;  3H47 A;  3G21 A;  4WYM A;  4GR6 A;  2EIA A;  2JYG A;  1YJ9 P;  2Z45 A;  5BS2 A;  4QNB A;  3G0V A;  2M8L A;  1VQP P;  1M90 Q;  1M6E X;  2CWO A;  1VQO P;  1IUQ A;  3CC4 P;  3CME P;  4U0A A;  3H0D A;  1D1D A;  4COC A;  5HGO A;  4IPY A;  1Q82 Q;  3DS1 A;  4M0I A;  1RO2 A;  3G1G A;  1QRJ A;  1K9M Q;  4PH1 A;  3B5I A;  1W2B O;  4XFX A;  1Q86 Q;  3CCL P;  2Z46 A;  1S72 P;  3DS0 A;  2JYL A;  1AUM A;  2XXM A;  1KQS O;  1VQ5 P;  1M74 A;  2PEQ A;  3G26 A;  3CC7 P;  3DS4 A;  1VQN P;  2EFJ A;  5BS1 A;  2E1M A;  3Q20 A;  2DGY A;  1E6J P;  3I56 P;  1N8R Q;  3MGE A;  3WBH A;  3CCV P;  3CCJ P;  3G29 A;  1YI2 P;  3H4E A;  1YIT P;  1QVG O;  1Q7Y Q;  2EG5 A;  3OW2 O;  1RO0 A;  2LF4 A;  3NTE A;  3P05 A;  1JJ2 O;  5HGM A;  1RNI A;  3G28 A;  2QA4 P;  3CPW O;  1YIJ P;  1EIA A;  4U0E A;  4U0D A;  5F2O A;  3CCR P;  2PEJ A;  3DTJ A;  3CCM P;  1VQM P;  1NJI Q;  4XRO A;  2PEK A;  1KC8 Q;  3HZQ A;  1M1K Q;  1M6N A;  3DS2 A;  2M8P A;  3DS5 A;  2XV6 A;  3CXC O;  4XFY A;  5I4T G;  1ZMB A;  2OTL P;  1A8O A;  1VQ6 P;  1BAJ A;  3CMA P;  3E2D A;  5HGL A;  4PH0 A;  3CCQ P;  3M1M A;  1YHQ P;  1K73 Q;  3I55 P;  2OAR A;  2P9X A;  4U0B A;  2PY8 A;  2M8N A;  1QVF O;  4XRQ A;  3G6E P;  5HGN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1A8OA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization