2K0DX

Nmr structure of a mutant colicin e7 immunity protein im7 with an extended helix iii
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
93
structure length
93
Chain Sequence
ELKNSISDYTEAEFVQLLKEIEKENVAATDDVLDVLLEHFVKITEHPDGTALIYEAAARAAANPGGDGGGPEGIVKEIKEWRAANGKPGFKQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Colicin-E7 immunity protein
publication title Amino acid insertion reveals a necessary three-helical intermediate in the folding pathway of the colicin E7 immunity protein Im7.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Toxin inhibitor
total genus 31
structure length 93
sequence length 93
ec nomenclature
pdb deposition date 2008-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2k0dX00
1AYIA 1MZ8A 1GXHA 2GYKA 2JAZA 4F37A 3GKLC 1ZNVA 1UNKA 4UHPB 3GJNA 1EMVA 3U43A 2K5XA 2GZGA 2JBGA 1E0HA 1FR2A 7CEIA 1IMPA 2GZIA 2VLOA 2VLNA 1IMQA 1UJZA 1BXIA 2NO8A 2VLPA 4QKOA 2GZEA 2JB0A 2K0DX 2GZJA 1CEIA 2WPTA 5EW5E 2VLQA 1GXGA 2GZFA 2ERHA
chains in the Genus database with same CATH superfamily
3DS0A 1VQ8P 2JAZA 4PWVB 3CC2P 3HZQA 2N6YA 2MR7A 3DS3A 3G29A 3U43A 3H4EA 3WBHA 1VQ7P 4R0MA 3CC4P 4PH1A 2KGDA 2KR5A 1IMQA 4QKOA 4H2WC 1YITP 1YJ9P 2VSQA 3G0VA 2DNWA 5EW5E 2E1MA 3LRYA 3DS1A 2L4BA 1GXHA 1VQKP 3NTEA 3B5IA 4NEOA 1DNYA 1K9MQ 2KOOA 1E0HA 2Z44A 1KD1Q 1FR2A 2KORA 2FQ0A 5F2OA 3G26A 2PNGA 5HVCA 3CXCO 1M1KQ 2BUOA 2PENA 2XXMA 1YJWP 1K8AQ 3EJBA 4BPFA 1KQSO 3GKLC 5KP7B 2GDYA 4PH0A 3CCVP 1RO0A 1T8KA 4XFZA 1AUMA 4U0FA 3DS4A 1VQ5P 2PEMA 2ROQA 1VHNA 4H2YC 2OTJP 1RNIA 5HGMA 1F80D 1DV5A 1K30A 1ZMBA 2QA4P 1M6NA 2M5RA 1L0IA 2EIAA 7CEIA 4IPYA 1IMPA 4IZ6A 3G1IA 1GPJA 2MVUA 1HY8A 3OW2O 2FHSC 2LL8A 2Z45A 2Z46A 2JYGA 1AF8A 1YI2P 3CMAP 2OARA 2P9XA 1VQ6P 1HQBA 2FAEA 3VRLC 4U0AA 3CD6P 3CC7P 3DS2A 2CGQA 2AF8A 2VLPA 3HYBA 4CA3A 1M74A 3CCMP 1KLPA 3CCLP 2GZFA 2AVAA 5EJDA 5BS1A 2MR8A 2KG8A 3G6EP 2JYLA 1OR5A 1ZNVA 3CE7A 2QEXP 1JJ2O 2KGCA 3EJEA 2JGPA 3B4QA 4DG9A 3I55P 4COPA 2K0DX 3P05A 2N5HA 4GR2A 2WPTA 1Q7YQ 3CCUP 2GYKA 4COCA 2FADA 4PXHB 1KC8Q 2MY5A 2LKIA 2AFEA 2M8PA 3G28A 2PEJA 4MRTC 2JB0A 2L9FA 2XT1A 2KOQA 2MVVA 3M1MA 1GXGA 2ERHA 1S72P 3H47A 2K93A 4XFXA 3RG2A 4F37A 4WYMA 1Z6MA 3NY7B 1Q81Q 2GZIA 2CQ8A 2CWOA 2FVAA 2GDWA 2K0XA 2AFDA 1VQOP 2FVFA 1MZ8A 2LOLA 3CCRP 2JO0A 2LF4A 5JPAA 3EJDA 2K0YA 4M0IA 1UJZA 1YJNP 2EHSA 5F2NA 1VQNP 1NJIQ 5I4TG 3G71P 2M8LA 3CPWO 2KW2A 3H0DA 4QNBA 5HGNA 2M8NA 3E2DA 2PEQA 4GR6A 2XZ0D 3GZLA 1YHQP 5KP8B 2PEOA 2L0QA 1VQ9P 3MGEA 1VQLP 4XRQA 4U0BA 2K2QA 1Q82Q 4UHPB 2JU1A 1X3OA 2FQ1A 2K5XA 1QVGO 2ONTA 2LTEA 1M90Q 3CCSP 5HGOA 3DTJA 2PEKA 2K94A 1RO2A 2XV6A 2MF4A 2LIWA 2NO8A 2GZEA 3CCQP 2CG5B 5HV8A 1A8OA 2N6ZA 2LMLA 5F2KA 2N50A 3DS5A 2K92A 1UNKA 4XFYA 2CNRA 2N98A 2GZGA 2JU2A 1VKUA 2GZJA 2EG5A 1CEIA 1IUQA 3GZMA 3CCJP 3CCEP 2OTLP 1QRJA 1EIAA 4H2XC 1QVFO 3Q20A 3G4SP 2LPKA 2QNWA 5HGLA 5DCKA 1ACPA 1K73Q 1M6EX 2KWLA 2GDXA 4U0CA 3CMEP 2XZ1C 2L22A 1VQPP 2FQ2A 4U0EA 2VLQA 2EFJA 2KG9A 1BXIA 3DPHA 1AYIA 2KGAA 2FACA 5CZDB 1NQ4A 4BPHA 1N8RQ 2DGYA 2JQ4A 4U0DA 5KP6B 3RG6C 3GJNA 1A43A 2KODA 2L6EA 2LIUA 2VLNA 1Q86Q 2EHTA 3I56P 2MD9A 2PY8A 4XROA 2KG6A 1W2BO 2KGEA 4BPGA 3LMOA 1L0HA 1EOQA 2BHVA 1EMVA 1VQ4P 5BS2A 1BAJA 2KOSA 2X2BA 2JBGA 3G21A 2KOPA 2FVEA 1VQMP 2VLOA 1YIJP 1D1DA 1E6JP 3G1GA 2N5IA 4HKGA 2PEIA
chains in the Genus database with same CATH topology
1AYIA 1MZ8A 1GXHA 2GYKA 2JAZA 4F37A 3GKLC 1ZNVA 1UNKA 4UHPB 3GJNA 1EMVA 3U43A 2K5XA 2GZGA 2JBGA 1E0HA 1FR2A 7CEIA 1IMPA 2GZIA 2VLOA 2VLNA 1IMQA 1UJZA 1BXIA 2NO8A 2VLPA 4QKOA 2GZEA 2JB0A 2K0DX 2GZJA 1CEIA 2WPTA 5EW5E 2VLQA 1GXGA 2GZFA 2ERHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AYI A;  1MZ8 A;  1GXH A;  2GYK A;  2JAZ A;  4F37 A;  3GKL C;  1ZNV A;  1UNK A;  4UHP B;  3GJN A;  1EMV A;  3U43 A;  2K5X A;  2GZG A;  2JBG A;  1E0H A;  1FR2 A;  7CEI A;  1IMP A;  2GZI A;  2VLO A;  2VLN A;  1IMQ A;  1UJZ A;  1BXI A;  2NO8 A;  2VLP A;  4QKO A;  2GZE A;  2JB0 A;  2K0D X;  2GZJ A;  1CEI A;  2WPT A;  5EW5 E;  2VLQ A;  1GXG A;  2GZF A;  2ERH A; 
#chains in the Genus database with same CATH topology
 3DS0 A;  1VQ8 P;  2JAZ A;  4PWV B;  3CC2 P;  3HZQ A;  2N6Y A;  2MR7 A;  3DS3 A;  3G29 A;  3U43 A;  3H4E A;  3WBH A;  1VQ7 P;  4R0M A;  3CC4 P;  4PH1 A;  2KGD A;  2KR5 A;  1IMQ A;  4QKO A;  4H2W C;  1YIT P;  1YJ9 P;  2VSQ A;  3G0V A;  2DNW A;  5EW5 E;  2E1M A;  3LRY A;  3DS1 A;  2L4B A;  1GXH A;  1VQK P;  3NTE A;  3B5I A;  4NEO A;  1DNY A;  1K9M Q;  2KOO A;  1E0H A;  2Z44 A;  1KD1 Q;  1FR2 A;  2KOR A;  2FQ0 A;  5F2O A;  3G26 A;  2PNG A;  5HVC A;  3CXC O;  1M1K Q;  2BUO A;  2PEN A;  2XXM A;  1YJW P;  1K8A Q;  3EJB A;  4BPF A;  1KQS O;  3GKL C;  5KP7 B;  2GDY A;  4PH0 A;  3CCV P;  1RO0 A;  1T8K A;  4XFZ A;  1AUM A;  4U0F A;  3DS4 A;  1VQ5 P;  2PEM A;  2ROQ A;  1VHN A;  4H2Y C;  2OTJ P;  1RNI A;  5HGM A;  1F80 D;  1DV5 A;  1K30 A;  1ZMB A;  2QA4 P;  1M6N A;  2M5R A;  1L0I A;  2EIA A;  7CEI A;  4IPY A;  1IMP A;  4IZ6 A;  3G1I A;  1GPJ A;  2MVU A;  1HY8 A;  3OW2 O;  2FHS C;  2LL8 A;  2Z45 A;  2Z46 A;  2JYG A;  1AF8 A;  1YI2 P;  3CMA P;  2OAR A;  2P9X A;  1VQ6 P;  1HQB A;  2FAE A;  3VRL C;  4U0A A;  3CD6 P;  3CC7 P;  3DS2 A;  2CGQ A;  2AF8 A;  2VLP A;  3HYB A;  4CA3 A;  1M74 A;  3CCM P;  1KLP A;  3CCL P;  2GZF A;  2AVA A;  5EJD A;  5BS1 A;  2MR8 A;  2KG8 A;  3G6E P;  2JYL A;  1OR5 A;  1ZNV A;  3CE7 A;  2QEX P;  1JJ2 O;  2KGC A;  3EJE A;  2JGP A;  3B4Q A;  4DG9 A;  3I55 P;  4COP A;  2K0D X;  3P05 A;  2N5H A;  4GR2 A;  2WPT A;  1Q7Y Q;  3CCU P;  2GYK A;  4COC A;  2FAD A;  4PXH B;  1KC8 Q;  2MY5 A;  2LKI A;  2AFE A;  2M8P A;  3G28 A;  2PEJ A;  4MRT C;  2JB0 A;  2L9F A;  2XT1 A;  2KOQ A;  2MVV A;  3M1M A;  1GXG A;  2ERH A;  1S72 P;  3H47 A;  2K93 A;  4XFX A;  3RG2 A;  4F37 A;  4WYM A;  1Z6M A;  3NY7 B;  1Q81 Q;  2GZI A;  2CQ8 A;  2CWO A;  2FVA A;  2GDW A;  2K0X A;  2AFD A;  1VQO P;  2FVF A;  1MZ8 A;  2LOL A;  3CCR P;  2JO0 A;  2LF4 A;  5JPA A;  3EJD A;  2K0Y A;  4M0I A;  1UJZ A;  1YJN P;  2EHS A;  5F2N A;  1VQN P;  1NJI Q;  5I4T G;  3G71 P;  2M8L A;  3CPW O;  2KW2 A;  3H0D A;  4QNB A;  5HGN A;  2M8N A;  3E2D A;  2PEQ A;  4GR6 A;  2XZ0 D;  3GZL A;  1YHQ P;  5KP8 B;  2PEO A;  2L0Q A;  1VQ9 P;  3MGE A;  1VQL P;  4XRQ A;  4U0B A;  2K2Q A;  1Q82 Q;  4UHP B;  2JU1 A;  1X3O A;  2FQ1 A;  2K5X A;  1QVG O;  2ONT A;  2LTE A;  1M90 Q;  3CCS P;  5HGO A;  3DTJ A;  2PEK A;  2K94 A;  1RO2 A;  2XV6 A;  2MF4 A;  2LIW A;  2NO8 A;  2GZE A;  3CCQ P;  2CG5 B;  5HV8 A;  1A8O A;  2N6Z A;  2LML A;  5F2K A;  2N50 A;  3DS5 A;  2K92 A;  1UNK A;  4XFY A;  2CNR A;  2N98 A;  2GZG A;  2JU2 A;  1VKU A;  2GZJ A;  2EG5 A;  1CEI A;  1IUQ A;  3GZM A;  3CCJ P;  3CCE P;  2OTL P;  1QRJ A;  1EIA A;  4H2X C;  1QVF O;  3Q20 A;  3G4S P;  2LPK A;  2QNW A;  5HGL A;  5DCK A;  1ACP A;  1K73 Q;  1M6E X;  2KWL A;  2GDX A;  4U0C A;  3CME P;  2XZ1 C;  2L22 A;  1VQP P;  2FQ2 A;  4U0E A;  2VLQ A;  2EFJ A;  2KG9 A;  1BXI A;  3DPH A;  1AYI A;  2KGA A;  2FAC A;  5CZD B;  1NQ4 A;  4BPH A;  1N8R Q;  2DGY A;  2JQ4 A;  4U0D A;  5KP6 B;  3RG6 C;  3GJN A;  1A43 A;  2KOD A;  2L6E A;  2LIU A;  2VLN A;  1Q86 Q;  2EHT A;  3I56 P;  2MD9 A;  2PY8 A;  4XRO A;  2KG6 A;  1W2B O;  2KGE A;  4BPG A;  3LMO A;  1L0H A;  1EOQ A;  2BHV A;  1EMV A;  1VQ4 P;  5BS2 A;  1BAJ A;  2KOS A;  2X2B A;  2JBG A;  3G21 A;  2KOP A;  2FVE A;  1VQM P;  2VLO A;  1YIJ P;  1D1D A;  1E6J P;  3G1G A;  2N5I A;  4HKG A;  2PEI A; 
#chains in the Genus database with same CATH homology
 1AYI A;  1MZ8 A;  1GXH A;  2GYK A;  2JAZ A;  4F37 A;  3GKL C;  1ZNV A;  1UNK A;  4UHP B;  3GJN A;  1EMV A;  3U43 A;  2K5X A;  2GZG A;  2JBG A;  1E0H A;  1FR2 A;  7CEI A;  1IMP A;  2GZI A;  2VLO A;  2VLN A;  1IMQ A;  1UJZ A;  1BXI A;  2NO8 A;  2VLP A;  4QKO A;  2GZE A;  2JB0 A;  2K0D X;  2GZJ A;  1CEI A;  2WPT A;  5EW5 E;  2VLQ A;  1GXG A;  2GZF A;  2ERH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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