2K0DX

Nmr structure of a mutant colicin e7 immunity protein im7 with an extended helix iii
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
93
structure length
93
Chain Sequence
ELKNSISDYTEAEFVQLLKEIEKENVAATDDVLDVLLEHFVKITEHPDGTALIYEAAARAAANPGGDGGGPEGIVKEIKEWRAANGKPGFKQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin inhibitor
source organism Escherichia coli
publication title Amino acid insertion reveals a necessary three-helical intermediate in the folding pathway of the colicin E7 immunity protein Im7.
pubmed doi rcsb
molecule keywords Colicin-E7 immunity protein
total genus 31
structure length 93
sequence length 93
ec nomenclature
pdb deposition date 2008-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2k0dX00
2JB0A 2GZGA 3GKLC 1CEIA 7CEIA 3U43A 1UJZA 2GZJA 2VLNA 2NO8A 5EW5E 1FR2A 1EMVA 1MZ8A 1GXHA 2GZFA 2GZEA 4QKOA 2GYKA 2VLQA 1IMQA 2JAZA 2ERHA 2JBGA 1UNKA 1BXIA 1GXGA 4UHPB 1AYIA 1ZNVA 2VLPA 1IMPA 4F37A 2K0DX 3GJNA 2GZIA 2WPTA 1E0HA 2VLOA 2K5XA
chains in the Genus database with same CATH superfamily
2GZGA 4H2XC 1UJZA 2XXMA 2KG6A 2FVFA 1VQPP 4H2WC 4QNBA 3CMEP 1VQNP 4UHPB 1AYIA 1OR5A 2K92A 2XV6A 4XFZA 2FACA 2MD9A 3DS0A 4R0MA 4COPA 2KR5A 1YJNP 1K9MQ 2NO8A 1VKUA 5EW5E 1K73Q 2L6EA 2PEMA 1HY8A 3NY7B 3CE7A 2Z44A 2KOOA 2X2BA 2KWLA 2N6YA 2LKIA 2GZIA 2WPTA 2OTLP 1K30A 2BUOA 3DS1A 1QVGO 4U0FA 2XT1A 5HGNA 2PEIA 3CCQP 3E2DA 1Q86Q 4IPYA 2KG9A 2AVAA 2PEQA 2CNRA 5HGLA 5HGMA 3CCVP 3CCRP 5EJDA 2LIWA 2DGYA 1AUMA 1M6EX 2VLQA 2QNWA 2L22A 3DS5A 2MF4A 1ZNVA 5BS2A 1VQ7P 4WYMA 2N98A 2JU2A 2KOPA 4BPGA 1KD1Q 2N6ZA 2KOQA 1M74A 4PWVB 3DS2A 5I4TG 2KW2A 1FR2A 2PEJA 1ZMBA 1M1KQ 3G28A 2LIUA 1RO2A 2FQ2A 2JO0A 2N5HA 1BAJA 4XRQA 3CD6P 2FQ0A 2K0DX 2CWOA 3GJNA 1X3OA 3RG2A 2CG5B 2PNGA 5JPAA 3H0DA 2EHSA 2MY5A 2OARA 2DNWA 5F2KA 1M6NA 2L0QA 2KG8A 4U0BA 4XFYA 1ACPA 1E6JP 3G6EP 5KP6B 2GDYA 1JJ2O 1RNIA 1CEIA 4MRTC 1VQLP 2LF4A 2GDXA 2N5IA 5DCKA 2AFEA 3CCLP 1EMVA 3I56P 2M8PA 3CCMP 1IMQA 1QVFO 2XZ0D 3H47A 2Z46A 3CC2P 1VHNA 3DS4A 2GDWA 2LMLA 3CCJP 3CCSP 1YJ9P 1DNYA 4PH1A 3EJDA 4XROA 3CC7P 1UNKA 2MR7A 1IMPA 2JGPA 1Z6MA 5F2OA 4GR2A 1A8OA 4BPHA 4XFXA 1VQKP 3U43A 3B5IA 1KC8Q 3P05A 2EFJA 1Q7YQ 2LL8A 2ROQA 2M8LA 4U0CA 1GXGA 2M8NA 4COCA 2FAEA 5KP8B 2ONTA 4H2YC 2LOLA 2VLOA 4GR6A 2JB0A 1W2BO 1DV5A 1A43A 1GPJA 7CEIA 2EG5A 4DG9A 1L0HA 1VQ4P 1BXIA 2AF8A 2LTEA 2PEOA 2OTJP 4BPFA 3CPWO 1NJIQ 2N50A 2MVUA 2EIAA 1VQMP 2VLNA 1YI2P 2KORA 3M1MA 3CC4P 2GZEA 1VQ6P 5HGOA 1AF8A 3DPHA 3HZQA 2L9FA 3WBHA 4HKGA 4NEOA 3CMAP 3G0VA 2KGDA 1VQ5P 3CXCO 3G26A 2VSQA 2MVVA 1VQ8P 3H4EA 3HYBA 4U0EA 3GKLC 1VQ9P 3DTJA 1IUQA 3GZLA 3OW2O 3LMOA 1YJWP 4IZ6A 2JU1A 2JAZA 2K0XA 1VQOP 3VRLC 2K2QA 2KODA 3EJEA 2LPKA 3LRYA 1KQSO 5F2NA 1F80D 1MZ8A 1KLPA 2PENA 2FQ1A 1YIJP 3RG6C 3G71P 1NQ4A 3NTEA 5CZDB 5BS1A 2Z45A 4F37A 2KGEA 5KP7B 2KOSA 1QRJA 4CA3A 1K8AQ 3CCUP 1L0IA 4M0IA 3G21A 3G1GA 2FADA 1EIAA 3EJBA 4PXHB 3G1IA 3GZMA 2FVAA 2CQ8A 3B4QA 2CGQA 2AFDA 2M5RA 2EHTA 2K5XA 2K0YA 2FVEA 3DS3A 1HQBA 1YHQP 2GZJA 2PEKA 2JQ4A 4PH0A 1RO0A 4QKOA 2K94A 1Q81Q 2L4BA 2MR8A 3G4SP 2VLPA 1M90Q 4U0DA 2P9XA 2KGCA 3Q20A 3G29A 1N8RQ 1E0HA 2JYLA 2E1MA 5HV8A 1D1DA 2XZ1C 3I55P 1GXHA 2GZFA 2FHSC 2GYKA 3CCEP 1Q82Q 2QEXP 2ERHA 2JBGA 2JYGA 1YITP 2BHVA 2K93A 1S72P 2QA4P 1T8KA 3MGEA 2PY8A 2KGAA 5HVCA 1EOQA 4U0AA
chains in the Genus database with same CATH topology
2JB0A 2GZGA 3GKLC 1CEIA 7CEIA 3U43A 1UJZA 2GZJA 2VLNA 2NO8A 5EW5E 1FR2A 1EMVA 1MZ8A 1GXHA 2GZFA 2GZEA 4QKOA 2GYKA 2VLQA 1IMQA 2JAZA 2ERHA 2JBGA 1UNKA 1BXIA 1GXGA 4UHPB 1AYIA 1ZNVA 2VLPA 1IMPA 4F37A 2K0DX 3GJNA 2GZIA 2WPTA 1E0HA 2VLOA 2K5XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JB0 A;  2GZG A;  3GKL C;  1CEI A;  7CEI A;  3U43 A;  1UJZ A;  2GZJ A;  2VLN A;  2NO8 A;  5EW5 E;  1FR2 A;  1EMV A;  1MZ8 A;  1GXH A;  2GZF A;  2GZE A;  4QKO A;  2GYK A;  2VLQ A;  1IMQ A;  2JAZ A;  2ERH A;  2JBG A;  1UNK A;  1BXI A;  1GXG A;  4UHP B;  1AYI A;  1ZNV A;  2VLP A;  1IMP A;  4F37 A;  2K0D X;  3GJN A;  2GZI A;  2WPT A;  1E0H A;  2VLO A;  2K5X A; 
#chains in the Genus database with same CATH topology
 2GZG A;  4H2X C;  1UJZ A;  2XXM A;  2KG6 A;  2FVF A;  1VQP P;  4H2W C;  4QNB A;  3CME P;  1VQN P;  4UHP B;  1AYI A;  1OR5 A;  2K92 A;  2XV6 A;  4XFZ A;  2FAC A;  2MD9 A;  3DS0 A;  4R0M A;  4COP A;  2KR5 A;  1YJN P;  1K9M Q;  2NO8 A;  1VKU A;  5EW5 E;  1K73 Q;  2L6E A;  2PEM A;  1HY8 A;  3NY7 B;  3CE7 A;  2Z44 A;  2KOO A;  2X2B A;  2KWL A;  2N6Y A;  2LKI A;  2GZI A;  2WPT A;  2OTL P;  1K30 A;  2BUO A;  3DS1 A;  1QVG O;  4U0F A;  2XT1 A;  5HGN A;  2PEI A;  3CCQ P;  3E2D A;  1Q86 Q;  4IPY A;  2KG9 A;  2AVA A;  2PEQ A;  2CNR A;  5HGL A;  5HGM A;  3CCV P;  3CCR P;  5EJD A;  2LIW A;  2DGY A;  1AUM A;  1M6E X;  2VLQ A;  2QNW A;  2L22 A;  3DS5 A;  2MF4 A;  1ZNV A;  5BS2 A;  1VQ7 P;  4WYM A;  2N98 A;  2JU2 A;  2KOP A;  4BPG A;  1KD1 Q;  2N6Z A;  2KOQ A;  1M74 A;  4PWV B;  3DS2 A;  5I4T G;  2KW2 A;  1FR2 A;  2PEJ A;  1ZMB A;  1M1K Q;  3G28 A;  2LIU A;  1RO2 A;  2FQ2 A;  2JO0 A;  2N5H A;  1BAJ A;  4XRQ A;  3CD6 P;  2FQ0 A;  2K0D X;  2CWO A;  3GJN A;  1X3O A;  3RG2 A;  2CG5 B;  2PNG A;  5JPA A;  3H0D A;  2EHS A;  2MY5 A;  2OAR A;  2DNW A;  5F2K A;  1M6N A;  2L0Q A;  2KG8 A;  4U0B A;  4XFY A;  1ACP A;  1E6J P;  3G6E P;  5KP6 B;  2GDY A;  1JJ2 O;  1RNI A;  1CEI A;  4MRT C;  1VQL P;  2LF4 A;  2GDX A;  2N5I A;  5DCK A;  2AFE A;  3CCL P;  1EMV A;  3I56 P;  2M8P A;  3CCM P;  1IMQ A;  1QVF O;  2XZ0 D;  3H47 A;  2Z46 A;  3CC2 P;  1VHN A;  3DS4 A;  2GDW A;  2LML A;  3CCJ P;  3CCS P;  1YJ9 P;  1DNY A;  4PH1 A;  3EJD A;  4XRO A;  3CC7 P;  1UNK A;  2MR7 A;  1IMP A;  2JGP A;  1Z6M A;  5F2O A;  4GR2 A;  1A8O A;  4BPH A;  4XFX A;  1VQK P;  3U43 A;  3B5I A;  1KC8 Q;  3P05 A;  2EFJ A;  1Q7Y Q;  2LL8 A;  2ROQ A;  2M8L A;  4U0C A;  1GXG A;  2M8N A;  4COC A;  2FAE A;  5KP8 B;  2ONT A;  4H2Y C;  2LOL A;  2VLO A;  4GR6 A;  2JB0 A;  1W2B O;  1DV5 A;  1A43 A;  1GPJ A;  7CEI A;  2EG5 A;  4DG9 A;  1L0H A;  1VQ4 P;  1BXI A;  2AF8 A;  2LTE A;  2PEO A;  2OTJ P;  4BPF A;  3CPW O;  1NJI Q;  2N50 A;  2MVU A;  2EIA A;  1VQM P;  2VLN A;  1YI2 P;  2KOR A;  3M1M A;  3CC4 P;  2GZE A;  1VQ6 P;  5HGO A;  1AF8 A;  3DPH A;  3HZQ A;  2L9F A;  3WBH A;  4HKG A;  4NEO A;  3CMA P;  3G0V A;  2KGD A;  1VQ5 P;  3CXC O;  3G26 A;  2VSQ A;  2MVV A;  1VQ8 P;  3H4E A;  3HYB A;  4U0E A;  3GKL C;  1VQ9 P;  3DTJ A;  1IUQ A;  3GZL A;  3OW2 O;  3LMO A;  1YJW P;  4IZ6 A;  2JU1 A;  2JAZ A;  2K0X A;  1VQO P;  3VRL C;  2K2Q A;  2KOD A;  3EJE A;  2LPK A;  3LRY A;  1KQS O;  5F2N A;  1F80 D;  1MZ8 A;  1KLP A;  2PEN A;  2FQ1 A;  1YIJ P;  3RG6 C;  3G71 P;  1NQ4 A;  3NTE A;  5CZD B;  5BS1 A;  2Z45 A;  4F37 A;  2KGE A;  5KP7 B;  2KOS A;  1QRJ A;  4CA3 A;  1K8A Q;  3CCU P;  1L0I A;  4M0I A;  3G21 A;  3G1G A;  2FAD A;  1EIA A;  3EJB A;  4PXH B;  3G1I A;  3GZM A;  2FVA A;  2CQ8 A;  3B4Q A;  2CGQ A;  2AFD A;  2M5R A;  2EHT A;  2K5X A;  2K0Y A;  2FVE A;  3DS3 A;  1HQB A;  1YHQ P;  2GZJ A;  2PEK A;  2JQ4 A;  4PH0 A;  1RO0 A;  4QKO A;  2K94 A;  1Q81 Q;  2L4B A;  2MR8 A;  3G4S P;  2VLP A;  1M90 Q;  4U0D A;  2P9X A;  2KGC A;  3Q20 A;  3G29 A;  1N8R Q;  1E0H A;  2JYL A;  2E1M A;  5HV8 A;  1D1D A;  2XZ1 C;  3I55 P;  1GXH A;  2GZF A;  2FHS C;  2GYK A;  3CCE P;  1Q82 Q;  2QEX P;  2ERH A;  2JBG A;  2JYG A;  1YIT P;  2BHV A;  2K93 A;  1S72 P;  2QA4 P;  1T8K A;  3MGE A;  2PY8 A;  2KGA A;  5HVC A;  1EOQ A;  4U0A A; 
#chains in the Genus database with same CATH homology
 2JB0 A;  2GZG A;  3GKL C;  1CEI A;  7CEI A;  3U43 A;  1UJZ A;  2GZJ A;  2VLN A;  2NO8 A;  5EW5 E;  1FR2 A;  1EMV A;  1MZ8 A;  1GXH A;  2GZF A;  2GZE A;  4QKO A;  2GYK A;  2VLQ A;  1IMQ A;  2JAZ A;  2ERH A;  2JBG A;  1UNK A;  1BXI A;  1GXG A;  4UHP B;  1AYI A;  1ZNV A;  2VLP A;  1IMP A;  4F37 A;  2K0D X;  3GJN A;  2GZI A;  2WPT A;  1E0H A;  2VLO A;  2K5X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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