3U43A

Crystal structure of the colicin e2 dnase-im2 complex
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
92
structure length
92
Chain Sequence
LKHSISDYTEAEFLEFVKKICRAEGATEEDDNKLVREFERLTEHPDGSDLIYYPRDDREDSPEGIVKEIKEWRAANGKSGFKQGLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Colicin-E2 immunity protein
publication title Structure of the Ultra-High-Affinity Colicin E2 DNase-Im2 Complex.
pubmed doi rcsb
source organism Escherichia coli
total genus 30
structure length 92
sequence length 92
ec nomenclature
pdb deposition date 2011-10-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 3u43A00
2K0DX 1AYIA 2VLPA 2JAZA 2NO8A 4QKOA 7CEIA 2GYKA 1IMQA 2GZJA 1CEIA 1UNKA 1ZNVA 1GXHA 5EW5E 2VLNA 2GZGA 2GZIA 1MZ8A 2VLQA 2VLOA 1FR2A 1E0HA 3GJNA 2WPTA 1EMVA 3U43A 2JBGA 3GKLC 1IMPA 2ERHA 2JB0A 2GZEA 2K5XA 1BXIA 1GXGA 2GZFA 4UHPB 4F37A 1UJZA
chains in the Genus database with same CATH superfamily
1K73Q 1IUQA 2VLPA 3CC7P 4H2WC 1KQSO 1VQMP 3CC4P 4COCA 1YI2P 1CEIA 2XZ1C 2MY5A 3Q20A 1FR2A 1E0HA 2OTJP 2MF4A 1D1DA 2L22A 2K0YA 4CA3A 1EOQA 5HGMA 1BXIA 3CCEP 2L6EA 2XXMA 2XZ0D 1YJWP 1VQ9P 4BPFA 1BAJA 3LMOA 2JGPA 5F2OA 4GR6A 1M1KQ 2LKIA 1VQ4P 2N98A 1QVFO 4H2YC 1K30A 2KORA 3CMAP 1M6NA 3DS0A 2GZFA 1VQNP 2JU2A 5I4TG 2N6YA 1HQBA 1VQ8P 2EIAA 2KW2A 3GZMA 2JU1A 2K92A 4XFYA 2FVFA 1A43A 2L0QA 3CCJP 2K5XA 2JO0A 1NQ4A 4NEOA 3H0DA 3WBHA 1IMQA 2LF4A 3RG2A 1YIJP 3DS4A 1GXHA 4WYMA 2L4BA 2CG5B 2GDYA 4BPHA 2WPTA 4QNBA 2LOLA 1Q7YQ 1L0IA 2N5IA 3MGEA 1AYIA 3G1GA 2PEIA 3H47A 4QKOA 4COPA 2Z46A 2PEMA 4U0BA 2GZGA 4U0DA 2LMLA 3CCSP 1K8AQ 5JPAA 5HV8A 3CCVP 1EMVA 2FVAA 2ERHA 3DPHA 4XFXA 5KP7B 2FAEA 2FVEA 4R0MA 3DS3A 2Z45A 2CQ8A 1F80D 1OR5A 3DS5A 1RNIA 2KGAA 3HZQA 2NO8A 3G1IA 2JQ4A 1Q82Q 1ZNVA 2KG9A 1VQ7P 2FHSC 4PWVB 2VLOA 3HYBA 1ZMBA 1DV5A 2PNGA 2KGEA 2KG8A 4F37A 2ONTA 3CPWO 3CD6P 1HY8A 3G0VA 2LTEA 4U0FA 4U0AA 3CMEP 1QVGO 1L0HA 3E2DA 2EFJA 2JYLA 2EHSA 3U43A 2JBGA 4BPGA 3DS2A 1YHQP 3CXCO 3VRLC 3G28A 4IZ6A 2KGDA 2AFDA 2CNRA 2KR5A 2VLNA 1KLPA 3CCQP 1M6EX 1VQKP 3G4SP 3LRYA 3CC2P 2AF8A 3CE7A 2MVVA 2GDWA 1A8OA 3NTEA 2K0DX 3EJBA 5KP6B 2JAZA 3H4EA 2KWLA 3GZLA 1AUMA 1EIAA 1W2BO 1VQPP 4MRTC 3G21A 2PENA 1VQOP 1KD1Q 4M0IA 2EG5A 3G29A 2GDXA 2ROQA 4UHPB 1VQ6P 2LIUA 2N50A 1VQLP 5BS1A 1E6JP 3OW2O 2GZJA 2CWOA 1M74A 1MZ8A 3CCRP 1RO2A 2EHTA 4XRQA 4PH0A 2MR8A 1VHNA 2MR7A 2E1MA 2Z44A 1GPJA 5DCKA 2DGYA 3CCLP 4PXHB 2PEOA 1YJNP 2KOQA 2KOPA 2KGCA 2BHVA 5EW5E 3I55P 2AVAA 1Z6MA 2GZIA 3B5IA 2VLQA 2KOOA 5EJDA 3G26A 2GZEA 2K2QA 3CCMP 2M8PA 2L9FA 2K93A 2BUOA 1VKUA 1NJIQ 2M8LA 3B4QA 7CEIA 1YJ9P 1Q81Q 2QA4P 1UNKA 5HVCA 2K0XA 2PEJA 2M8NA 1ACPA 1Q86Q 3I56P 5KP8B 1VQ5P 1RO0A 1AF8A 4H2XC 2FACA 2DNWA 1X3OA 2N5HA 2JYGA 2OTLP 4HKGA 2OARA 2P9XA 2PEQA 5F2KA 3CCUP 1KC8Q 2AFEA 2PY8A 2QEXP 2LIWA 1GXGA 2FADA 3RG6C 1M90Q 3G6EP 1UJZA 3P05A 2X2BA 2VSQA 5CZDB 4GR2A 5BS2A 3NY7B 2MVUA 1S72P 2KG6A 2MD9A 2FQ2A 2N6ZA 3GKLC 2FQ0A 4XFZA 1N8RQ 3DS1A 4DG9A 1YITP 2FQ1A 2CGQA 1K9MQ 5F2NA 2M5RA 2KOSA 2PEKA 2XT1A 3EJDA 3EJEA 5HGNA 2LL8A 3GJNA 2QNWA 1DNYA 1IMPA 3DTJA 5HGOA 4PH1A 2KODA 2K94A 4IPYA 1T8KA 3G71P 2GYKA 4U0CA 1JJ2O 4U0EA 2XV6A 5HGLA 3M1MA 1QRJA 4XROA 2JB0A 2LPKA
chains in the Genus database with same CATH topology
2K0DX 1AYIA 2VLPA 2JAZA 2NO8A 4QKOA 7CEIA 2GYKA 1IMQA 2GZJA 1CEIA 1UNKA 1ZNVA 1GXHA 5EW5E 2VLNA 2GZGA 2GZIA 1MZ8A 2VLQA 2VLOA 1FR2A 1E0HA 3GJNA 2WPTA 1EMVA 3U43A 2JBGA 3GKLC 1IMPA 2ERHA 2JB0A 2GZEA 2K5XA 1BXIA 1GXGA 2GZFA 4UHPB 4F37A 1UJZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K0D X;  1AYI A;  2VLP A;  2JAZ A;  2NO8 A;  4QKO A;  7CEI A;  2GYK A;  1IMQ A;  2GZJ A;  1CEI A;  1UNK A;  1ZNV A;  1GXH A;  5EW5 E;  2VLN A;  2GZG A;  2GZI A;  1MZ8 A;  2VLQ A;  2VLO A;  1FR2 A;  1E0H A;  3GJN A;  2WPT A;  1EMV A;  3U43 A;  2JBG A;  3GKL C;  1IMP A;  2ERH A;  2JB0 A;  2GZE A;  2K5X A;  1BXI A;  1GXG A;  2GZF A;  4UHP B;  4F37 A;  1UJZ A; 
#chains in the Genus database with same CATH topology
 1K73 Q;  1IUQ A;  2VLP A;  3CC7 P;  4H2W C;  1KQS O;  1VQM P;  3CC4 P;  4COC A;  1YI2 P;  1CEI A;  2XZ1 C;  2MY5 A;  3Q20 A;  1FR2 A;  1E0H A;  2OTJ P;  2MF4 A;  1D1D A;  2L22 A;  2K0Y A;  4CA3 A;  1EOQ A;  5HGM A;  1BXI A;  3CCE P;  2L6E A;  2XXM A;  2XZ0 D;  1YJW P;  1VQ9 P;  4BPF A;  1BAJ A;  3LMO A;  2JGP A;  5F2O A;  4GR6 A;  1M1K Q;  2LKI A;  1VQ4 P;  2N98 A;  1QVF O;  4H2Y C;  1K30 A;  2KOR A;  3CMA P;  1M6N A;  3DS0 A;  2GZF A;  1VQN P;  2JU2 A;  5I4T G;  2N6Y A;  1HQB A;  1VQ8 P;  2EIA A;  2KW2 A;  3GZM A;  2JU1 A;  2K92 A;  4XFY A;  2FVF A;  1A43 A;  2L0Q A;  3CCJ P;  2K5X A;  2JO0 A;  1NQ4 A;  4NEO A;  3H0D A;  3WBH A;  1IMQ A;  2LF4 A;  3RG2 A;  1YIJ P;  3DS4 A;  1GXH A;  4WYM A;  2L4B A;  2CG5 B;  2GDY A;  4BPH A;  2WPT A;  4QNB A;  2LOL A;  1Q7Y Q;  1L0I A;  2N5I A;  3MGE A;  1AYI A;  3G1G A;  2PEI A;  3H47 A;  4QKO A;  4COP A;  2Z46 A;  2PEM A;  4U0B A;  2GZG A;  4U0D A;  2LML A;  3CCS P;  1K8A Q;  5JPA A;  5HV8 A;  3CCV P;  1EMV A;  2FVA A;  2ERH A;  3DPH A;  4XFX A;  5KP7 B;  2FAE A;  2FVE A;  4R0M A;  3DS3 A;  2Z45 A;  2CQ8 A;  1F80 D;  1OR5 A;  3DS5 A;  1RNI A;  2KGA A;  3HZQ A;  2NO8 A;  3G1I A;  2JQ4 A;  1Q82 Q;  1ZNV A;  2KG9 A;  1VQ7 P;  2FHS C;  4PWV B;  2VLO A;  3HYB A;  1ZMB A;  1DV5 A;  2PNG A;  2KGE A;  2KG8 A;  4F37 A;  2ONT A;  3CPW O;  3CD6 P;  1HY8 A;  3G0V A;  2LTE A;  4U0F A;  4U0A A;  3CME P;  1QVG O;  1L0H A;  3E2D A;  2EFJ A;  2JYL A;  2EHS A;  3U43 A;  2JBG A;  4BPG A;  3DS2 A;  1YHQ P;  3CXC O;  3VRL C;  3G28 A;  4IZ6 A;  2KGD A;  2AFD A;  2CNR A;  2KR5 A;  2VLN A;  1KLP A;  3CCQ P;  1M6E X;  1VQK P;  3G4S P;  3LRY A;  3CC2 P;  2AF8 A;  3CE7 A;  2MVV A;  2GDW A;  1A8O A;  3NTE A;  2K0D X;  3EJB A;  5KP6 B;  2JAZ A;  3H4E A;  2KWL A;  3GZL A;  1AUM A;  1EIA A;  1W2B O;  1VQP P;  4MRT C;  3G21 A;  2PEN A;  1VQO P;  1KD1 Q;  4M0I A;  2EG5 A;  3G29 A;  2GDX A;  2ROQ A;  4UHP B;  1VQ6 P;  2LIU A;  2N50 A;  1VQL P;  5BS1 A;  1E6J P;  3OW2 O;  2GZJ A;  2CWO A;  1M74 A;  1MZ8 A;  3CCR P;  1RO2 A;  2EHT A;  4XRQ A;  4PH0 A;  2MR8 A;  1VHN A;  2MR7 A;  2E1M A;  2Z44 A;  1GPJ A;  5DCK A;  2DGY A;  3CCL P;  4PXH B;  2PEO A;  1YJN P;  2KOQ A;  2KOP A;  2KGC A;  2BHV A;  5EW5 E;  3I55 P;  2AVA A;  1Z6M A;  2GZI A;  3B5I A;  2VLQ A;  2KOO A;  5EJD A;  3G26 A;  2GZE A;  2K2Q A;  3CCM P;  2M8P A;  2L9F A;  2K93 A;  2BUO A;  1VKU A;  1NJI Q;  2M8L A;  3B4Q A;  7CEI A;  1YJ9 P;  1Q81 Q;  2QA4 P;  1UNK A;  5HVC A;  2K0X A;  2PEJ A;  2M8N A;  1ACP A;  1Q86 Q;  3I56 P;  5KP8 B;  1VQ5 P;  1RO0 A;  1AF8 A;  4H2X C;  2FAC A;  2DNW A;  1X3O A;  2N5H A;  2JYG A;  2OTL P;  4HKG A;  2OAR A;  2P9X A;  2PEQ A;  5F2K A;  3CCU P;  1KC8 Q;  2AFE A;  2PY8 A;  2QEX P;  2LIW A;  1GXG A;  2FAD A;  3RG6 C;  1M90 Q;  3G6E P;  1UJZ A;  3P05 A;  2X2B A;  2VSQ A;  5CZD B;  4GR2 A;  5BS2 A;  3NY7 B;  2MVU A;  1S72 P;  2KG6 A;  2MD9 A;  2FQ2 A;  2N6Z A;  3GKL C;  2FQ0 A;  4XFZ A;  1N8R Q;  3DS1 A;  4DG9 A;  1YIT P;  2FQ1 A;  2CGQ A;  1K9M Q;  5F2N A;  2M5R A;  2KOS A;  2PEK A;  2XT1 A;  3EJD A;  3EJE A;  5HGN A;  2LL8 A;  3GJN A;  2QNW A;  1DNY A;  1IMP A;  3DTJ A;  5HGO A;  4PH1 A;  2KOD A;  2K94 A;  4IPY A;  1T8K A;  3G71 P;  2GYK A;  4U0C A;  1JJ2 O;  4U0E A;  2XV6 A;  5HGL A;  3M1M A;  1QRJ A;  4XRO A;  2JB0 A;  2LPK A; 
#chains in the Genus database with same CATH homology
 2K0D X;  1AYI A;  2VLP A;  2JAZ A;  2NO8 A;  4QKO A;  7CEI A;  2GYK A;  1IMQ A;  2GZJ A;  1CEI A;  1UNK A;  1ZNV A;  1GXH A;  5EW5 E;  2VLN A;  2GZG A;  2GZI A;  1MZ8 A;  2VLQ A;  2VLO A;  1FR2 A;  1E0H A;  3GJN A;  2WPT A;  1EMV A;  3U43 A;  2JBG A;  3GKL C;  1IMP A;  2ERH A;  2JB0 A;  2GZE A;  2K5X A;  1BXI A;  1GXG A;  2GZF A;  4UHP B;  4F37 A;  1UJZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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