1AUMA

Hiv capsid c-terminal domain (cac146)
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
70
structure length
70
Chain Sequence
LDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords HIV CAPSID
publication title Structure of the carboxyl-terminal dimerization domain of the HIV-1 capsid protein.
pubmed doi rcsb
source organism Human immunodeficiency virus 1
total genus 22
structure length 70
sequence length 70
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 1997-08-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 1aumA00
1QRJA 2JYGA 3G1GA 5I4TG 2ONTA 1BAJA 2LF4A 3P05A 4XFXA 4WYMA 3DTJA 5DCKA 3G21A 2M8LA 4XROA 1AUMA 2M8NA 2M8PA 2XV6A 3LRYA 4IPYA 4QNBA 4COCA 4U0AA 3G28A 4XFYA 5HGNA 4U0BA 3H47A 4PH1A 3DS3A 4U0CA 3G29A 5HGLA 3H4EA 1E6JP 1A8OA 4XRQA 2L6EA 4COPA 3DS2A 4U0EA 4XFZA 1A43A 4PH0A 3G1IA 5HGMA 5HGOA 4M0IA 3DS1A 3DS4A 3DS0A 2XXMA 2XT1A 3NTEA 2KODA 4U0FA 2EIAA 3VRLC 2BUOA 1EOQA 1EIAA 2JYLA 3DS5A 5JPAA 3G0VA 4U0DA 2JO0A 3DPHA 1D1DA 3G26A 3MGEA
chains in the Genus database with same CATH superfamily
3CCVP 3CE7A 2EHTA 5HVCA 1DNYA 3CCUP 2JGPA 2PEOA 2LTEA 1VQLP 2EFJA 2XXMA 2KODA 2M5RA 3CCRP 1Q82Q 1RO2A 2FHSC 1QRJA 2GZFA 1K73Q 3CMEP 2FAEA 3G21A 3B5IA 2KW2A 2K0XA 3H0DA 3G29A 2L0QA 2MVUA 4NEOA 4M0IA 3E2DA 2FVAA 2BUOA 1EIAA 1IUQA 2L9FA 2FACA 1VQKP 2E1MA 2CGQA 3CCLP 2Z46A 3CCJP 1N8RQ 3HZQA 4PXHB 4PWVB 1DV5A 2L6EA 7CEIA 1A43A 2VLOA 2K0DX 2OTLP 1K9MQ 2XZ0D 1YIJP 2JYLA 5HV8A 2MF4A 1YJNP 3G26A 1VHNA 1ZNVA 2CG5B 2MR8A 3OW2O 4H2XC 1NQ4A 2GZEA 3LRYA 3CCQP 1E0HA 2JAZA 2AVAA 1RNIA 2PEMA 2GZGA 1K8AQ 1YHQP 1W2BO 1L0IA 2VLQA 1Q81Q 3CC4P 1VQOP 1IMQA 2KWLA 1YI2P 2JYGA 1IMPA 3EJDA 5EJDA 1F80D 5DCKA 2LL8A 1VKUA 2M8PA 2PEIA 4F37A 2EG5A 2LIUA 1VQ9P 3DS0A 2JBGA 3CCEP 4GR6A 1M74A 1BAJA 2AFDA 4H2YC 1RO0A 2Z45A 3DTJA 2M8LA 2QEXP 3CC2P 2KG8A 2JU1A 2KR5A 5F2NA 5F2KA 4QNBA 2LMLA 3H47A 3DS3A 3H4EA 4DG9A 1E6JP 2N6ZA 2LOLA 5KP6B 1M1KQ 1QVFO 3Q20A 2Z44A 5HGMA 4H2WC 5HGOA 3DS4A 1Q7YQ 1KC8Q 2FVEA 3NTEA 3CCMP 4MRTC 2NO8A 2K92A 1S72P 2JQ4A 4R0MA 3GKLC 2GZJA 2KG9A 5EW5E 1GXGA 1KQSO 3G6EP 2CWOA 3WBHA 4IPYA 2OARA 3GZMA 4PH1A 1T8KA 2ERHA 1A8OA 4GR2A 4U0EA 1VQMP 4U0FA 2FQ1A 3G0VA 3CD6P 1QVGO 1YJ9P 2FQ2A 1NJIQ 1VQ6P 2BHVA 3RG2A 1VQ4P 3HYBA 2KGDA 2K94A 1KD1Q 3CC7P 1BXIA 3VRLC 2K0YA 1CEIA 1D1DA 2M8NA 1UJZA 2GDXA 1X3OA 1Z6MA 2PEJA 2WPTA 3I56P 4U0CA 2FVFA 2MVVA 2L4BA 5BS2A 4PH0A 3G1IA 2CNRA 1OR5A 2DGYA 2PY8A 2EIAA 1EOQA 2GYKA 1VQNP 2XV6A 4BPFA 4XFYA 1FR2A 4QKOA 1JJ2O 4XFZA 1VQPP 1Q86Q 2FQ0A 3G4SP 2QA4P 2CQ8A 3G1GA 2OTJP 2N5HA 3P05A 4XFXA 1UNKA 4WYMA 1VQ5P 2AFEA 4CA3A 4BPGA 1VQ8P 4U0BA 2KGCA 3G71P 5HGLA 5KP7B 2MY5A 2LIWA 2DNWA 2PNGA 4UHPB 1GXHA 2PENA 2X2BA 2N5IA 1AUMA 3CXCO 4BPHA 2KGAA 2JU2A 2LKIA 1GPJA 3DS1A 3RG6C 1MZ8A 5F2OA 2K93A 2ROQA 2JB0A 2LF4A 1KLPA 2GZIA 1AF8A 3U43A 2KOQA 2VLNA 2N98A 2KG6A 1HY8A 2PEQA 3GJNA 2KOSA 2XT1A 3LMOA 5JPAA 3EJEA 1HQBA 1YITP 2P9XA 2ONTA 2PEKA 2QNWA 4IZ6A 4U0AA 5HGNA 3M1MA 3GZLA 4COPA 1M90Q 5KP8B 1M6EX 3DS5A 2KOOA 5CZDB 2GDWA 2EHSA 2GDYA 2XZ1C 3B4QA 2L22A 2K5XA 3CCSP 3CPWO 4XROA 1AYIA 1L0HA 3NY7B 4COCA 3G28A 1M6NA 2MR7A 2AF8A 3DS2A 2MD9A 5BS1A 1K30A 2FADA 2KORA 1EMVA 2VSQA 1YJWP 3MGEA 2K2QA 5I4TG 2N6YA 2KOPA 2LPKA 3I55P 3CMAP 4XRQA 3EJBA 2N50A 1ZMBA 2KGEA 1ACPA 4U0DA 2JO0A 4HKGA 1VQ7P 3DPHA 2VLPA
chains in the Genus database with same CATH topology
2JYGA 2LF4A 5DCKA 3CCVP 2M8NA 2M8PA 2PEIA 2PEJA 3I56P 4U0CA 2EG5A 3CCUP 2PEOA 1VQ9P 5BS2A 4PH0A 2PEQA 1VQLP 3G1IA 2DGYA 3DS0A 2EFJA 2XXMA 2XT1A 2PY8A 2KODA 2EIAA 1EOQA 5JPAA 3CCEP 4GR6A 3CCRP 1M74A 1Q82Q 1VQNP 1RO2A 1YITP 1QRJA 2P9XA 2ONTA 1BAJA 2PEKA 1K73Q 3CMEP 1RO0A 2Z45A 3DTJA 3G21A 2M8LA 2QEXP 3CC2P 3B5IA 2XV6A 5F2NA 5F2KA 4QNBA 4U0AA 4XFYA 5HGNA 3M1MA 3H47A 3DS3A 3H0DA 3G29A 3H4EA 1E6JP 4COPA 1JJ2O 4XFZA 1M1KQ 1M90Q 1QVFO 3Q20A 2Z44A 4M0IA 5HGMA 5HGOA 3DS4A 1VQPP 1Q7YQ 1Q86Q 1KC8Q 1M6EX 3E2DA 3NTEA 3CCMP 2BUOA 1EIAA 3DS5A 3G4SP 1IUQA 2QA4P 1S72P 3G1GA 2OTJP 1VQKP 3P05A 2E1MA 4XFXA 3CCSP 3CPWO 4WYMA 3CCLP 4XROA 1VQ5P 3G6EP 1KQSO 2CWOA 3WBHA 2Z46A 4IPYA 4COCA 3HZQA 2OARA 3G28A 3CCJP 1N8RQ 4U0BA 1VQ8P 3G71P 4PH1A 5HGLA 1A8OA 1M6NA 2L6EA 4GR2A 3DS2A 4U0EA 1A43A 5BS1A 1VQMP 1K30A 2OTLP 4U0FA 1K9MQ 1YIJP 2JYLA 3G0VA 3CD6P 1YJWP 1YJNP 3G26A 3MGEA 5I4TG 1QVGO 1YJ9P 2PENA 3OW2O 1NJIQ 1AUMA 3CCQP 3LRYA 1VQ6P 2BHVA 1VQ4P 3CXCO 3HYBA 3I55P 3CMAP 4XRQA 1RNIA 2PEMA 1ZMBA 3DS1A 1K8AQ 1YHQP 1W2BO 1KD1Q 3CC7P 3VRLC 1Q81Q 3RG6C 4U0DA 5F2OA 2JO0A 1VQOP 3CC4P 1VQ7P 3DPHA 1D1DA 1YI2P
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QRJ A;  2JYG A;  3G1G A;  5I4T G;  2ONT A;  1BAJ A;  2LF4 A;  3P05 A;  4XFX A;  4WYM A;  3DTJ A;  5DCK A;  3G21 A;  2M8L A;  4XRO A;  1AUM A;  2M8N A;  2M8P A;  2XV6 A;  3LRY A;  4IPY A;  4QNB A;  4COC A;  4U0A A;  3G28 A;  4XFY A;  5HGN A;  4U0B A;  3H47 A;  4PH1 A;  3DS3 A;  4U0C A;  3G29 A;  5HGL A;  3H4E A;  1E6J P;  1A8O A;  4XRQ A;  2L6E A;  4COP A;  3DS2 A;  4U0E A;  4XFZ A;  1A43 A;  4PH0 A;  3G1I A;  5HGM A;  5HGO A;  4M0I A;  3DS1 A;  3DS4 A;  3DS0 A;  2XXM A;  2XT1 A;  3NTE A;  2KOD A;  4U0F A;  2EIA A;  3VRL C;  2BUO A;  1EOQ A;  1EIA A;  2JYL A;  3DS5 A;  5JPA A;  3G0V A;  4U0D A;  2JO0 A;  3DPH A;  1D1D A;  3G26 A;  3MGE A; 
#chains in the Genus database with same CATH topology
 3CCV P;  3CE7 A;  2EHT A;  5HVC A;  1DNY A;  3CCU P;  2JGP A;  2PEO A;  2LTE A;  1VQL P;  2EFJ A;  2XXM A;  2KOD A;  2M5R A;  3CCR P;  1Q82 Q;  1RO2 A;  2FHS C;  1QRJ A;  2GZF A;  1K73 Q;  3CME P;  2FAE A;  3G21 A;  3B5I A;  2KW2 A;  2K0X A;  3H0D A;  3G29 A;  2L0Q A;  2MVU A;  4NEO A;  4M0I A;  3E2D A;  2FVA A;  2BUO A;  1EIA A;  1IUQ A;  2L9F A;  2FAC A;  1VQK P;  2E1M A;  2CGQ A;  3CCL P;  2Z46 A;  3CCJ P;  1N8R Q;  3HZQ A;  4PXH B;  4PWV B;  1DV5 A;  2L6E A;  7CEI A;  1A43 A;  2VLO A;  2K0D X;  2OTL P;  1K9M Q;  2XZ0 D;  1YIJ P;  2JYL A;  5HV8 A;  2MF4 A;  1YJN P;  3G26 A;  1VHN A;  1ZNV A;  2CG5 B;  2MR8 A;  3OW2 O;  4H2X C;  1NQ4 A;  2GZE A;  3LRY A;  3CCQ P;  1E0H A;  2JAZ A;  2AVA A;  1RNI A;  2PEM A;  2GZG A;  1K8A Q;  1YHQ P;  1W2B O;  1L0I A;  2VLQ A;  1Q81 Q;  3CC4 P;  1VQO P;  1IMQ A;  2KWL A;  1YI2 P;  2JYG A;  1IMP A;  3EJD A;  5EJD A;  1F80 D;  5DCK A;  2LL8 A;  1VKU A;  2M8P A;  2PEI A;  4F37 A;  2EG5 A;  2LIU A;  1VQ9 P;  3DS0 A;  2JBG A;  3CCE P;  4GR6 A;  1M74 A;  1BAJ A;  2AFD A;  4H2Y C;  1RO0 A;  2Z45 A;  3DTJ A;  2M8L A;  2QEX P;  3CC2 P;  2KG8 A;  2JU1 A;  2KR5 A;  5F2N A;  5F2K A;  4QNB A;  2LML A;  3H47 A;  3DS3 A;  3H4E A;  4DG9 A;  1E6J P;  2N6Z A;  2LOL A;  5KP6 B;  1M1K Q;  1QVF O;  3Q20 A;  2Z44 A;  5HGM A;  4H2W C;  5HGO A;  3DS4 A;  1Q7Y Q;  1KC8 Q;  2FVE A;  3NTE A;  3CCM P;  4MRT C;  2NO8 A;  2K92 A;  1S72 P;  2JQ4 A;  4R0M A;  3GKL C;  2GZJ A;  2KG9 A;  5EW5 E;  1GXG A;  1KQS O;  3G6E P;  2CWO A;  3WBH A;  4IPY A;  2OAR A;  3GZM A;  4PH1 A;  1T8K A;  2ERH A;  1A8O A;  4GR2 A;  4U0E A;  1VQM P;  4U0F A;  2FQ1 A;  3G0V A;  3CD6 P;  1QVG O;  1YJ9 P;  2FQ2 A;  1NJI Q;  1VQ6 P;  2BHV A;  3RG2 A;  1VQ4 P;  3HYB A;  2KGD A;  2K94 A;  1KD1 Q;  3CC7 P;  1BXI A;  3VRL C;  2K0Y A;  1CEI A;  1D1D A;  2M8N A;  1UJZ A;  2GDX A;  1X3O A;  1Z6M A;  2PEJ A;  2WPT A;  3I56 P;  4U0C A;  2FVF A;  2MVV A;  2L4B A;  5BS2 A;  4PH0 A;  3G1I A;  2CNR A;  1OR5 A;  2DGY A;  2PY8 A;  2EIA A;  1EOQ A;  2GYK A;  1VQN P;  2XV6 A;  4BPF A;  4XFY A;  1FR2 A;  4QKO A;  1JJ2 O;  4XFZ A;  1VQP P;  1Q86 Q;  2FQ0 A;  3G4S P;  2QA4 P;  2CQ8 A;  3G1G A;  2OTJ P;  2N5H A;  3P05 A;  4XFX A;  1UNK A;  4WYM A;  1VQ5 P;  2AFE A;  4CA3 A;  4BPG A;  1VQ8 P;  4U0B A;  2KGC A;  3G71 P;  5HGL A;  5KP7 B;  2MY5 A;  2LIW A;  2DNW A;  2PNG A;  4UHP B;  1GXH A;  2PEN A;  2X2B A;  2N5I A;  1AUM A;  3CXC O;  4BPH A;  2KGA A;  2JU2 A;  2LKI A;  1GPJ A;  3DS1 A;  3RG6 C;  1MZ8 A;  5F2O A;  2K93 A;  2ROQ A;  2JB0 A;  2LF4 A;  1KLP A;  2GZI A;  1AF8 A;  3U43 A;  2KOQ A;  2VLN A;  2N98 A;  2KG6 A;  1HY8 A;  2PEQ A;  3GJN A;  2KOS A;  2XT1 A;  3LMO A;  5JPA A;  3EJE A;  1HQB A;  1YIT P;  2P9X A;  2ONT A;  2PEK A;  2QNW A;  4IZ6 A;  4U0A A;  5HGN A;  3M1M A;  3GZL A;  4COP A;  1M90 Q;  5KP8 B;  1M6E X;  3DS5 A;  2KOO A;  5CZD B;  2GDW A;  2EHS A;  2GDY A;  2XZ1 C;  3B4Q A;  2L22 A;  2K5X A;  3CCS P;  3CPW O;  4XRO A;  1AYI A;  1L0H A;  3NY7 B;  4COC A;  3G28 A;  1M6N A;  2MR7 A;  2AF8 A;  3DS2 A;  2MD9 A;  5BS1 A;  1K30 A;  2FAD A;  2KOR A;  1EMV A;  2VSQ A;  1YJW P;  3MGE A;  2K2Q A;  5I4T G;  2N6Y A;  2KOP A;  2LPK A;  3I55 P;  3CMA P;  4XRQ A;  3EJB A;  2N50 A;  1ZMB A;  2KGE A;  1ACP A;  4U0D A;  2JO0 A;  4HKG A;  1VQ7 P;  3DPH A;  2VLP A; 
#chains in the Genus database with same CATH homology
 2JYG A;  2LF4 A;  5DCK A;  3CCV P;  2M8N A;  2M8P A;  2PEI A;  2PEJ A;  3I56 P;  4U0C A;  2EG5 A;  3CCU P;  2PEO A;  1VQ9 P;  5BS2 A;  4PH0 A;  2PEQ A;  1VQL P;  3G1I A;  2DGY A;  3DS0 A;  2EFJ A;  2XXM A;  2XT1 A;  2PY8 A;  2KOD A;  2EIA A;  1EOQ A;  5JPA A;  3CCE P;  4GR6 A;  3CCR P;  1M74 A;  1Q82 Q;  1VQN P;  1RO2 A;  1YIT P;  1QRJ A;  2P9X A;  2ONT A;  1BAJ A;  2PEK A;  1K73 Q;  3CME P;  1RO0 A;  2Z45 A;  3DTJ A;  3G21 A;  2M8L A;  2QEX P;  3CC2 P;  3B5I A;  2XV6 A;  5F2N A;  5F2K A;  4QNB A;  4U0A A;  4XFY A;  5HGN A;  3M1M A;  3H47 A;  3DS3 A;  3H0D A;  3G29 A;  3H4E A;  1E6J P;  4COP A;  1JJ2 O;  4XFZ A;  1M1K Q;  1M90 Q;  1QVF O;  3Q20 A;  2Z44 A;  4M0I A;  5HGM A;  5HGO A;  3DS4 A;  1VQP P;  1Q7Y Q;  1Q86 Q;  1KC8 Q;  1M6E X;  3E2D A;  3NTE A;  3CCM P;  2BUO A;  1EIA A;  3DS5 A;  3G4S P;  1IUQ A;  2QA4 P;  1S72 P;  3G1G A;  2OTJ P;  1VQK P;  3P05 A;  2E1M A;  4XFX A;  3CCS P;  3CPW O;  4WYM A;  3CCL P;  4XRO A;  1VQ5 P;  3G6E P;  1KQS O;  2CWO A;  3WBH A;  2Z46 A;  4IPY A;  4COC A;  3HZQ A;  2OAR A;  3G28 A;  3CCJ P;  1N8R Q;  4U0B A;  1VQ8 P;  3G71 P;  4PH1 A;  5HGL A;  1A8O A;  1M6N A;  2L6E A;  4GR2 A;  3DS2 A;  4U0E A;  1A43 A;  5BS1 A;  1VQM P;  1K30 A;  2OTL P;  4U0F A;  1K9M Q;  1YIJ P;  2JYL A;  3G0V A;  3CD6 P;  1YJW P;  1YJN P;  3G26 A;  3MGE A;  5I4T G;  1QVG O;  1YJ9 P;  2PEN A;  3OW2 O;  1NJI Q;  1AUM A;  3CCQ P;  3LRY A;  1VQ6 P;  2BHV A;  1VQ4 P;  3CXC O;  3HYB A;  3I55 P;  3CMA P;  4XRQ A;  1RNI A;  2PEM A;  1ZMB A;  3DS1 A;  1K8A Q;  1YHQ P;  1W2B O;  1KD1 Q;  3CC7 P;  3VRL C;  1Q81 Q;  3RG6 C;  4U0D A;  5F2O A;  2JO0 A;  1VQO P;  3CC4 P;  1VQ7 P;  3DPH A;  1D1D A;  1YI2 P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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