2VLOA

K97a mutant of e9 dnase domain in complex with im9
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
90
structure length
90
Chain Sequence
KHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQGLEHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords COLICIN-E9 IMMUNITY PROTEIN
publication title Experimental and Computational Analyses of the Energetic Basis for Dual Recognition of Immunity Proteins by Colicin Endonucleases.
pubmed doi rcsb
source organism Escherichia coli
total genus 28
structure length 90
sequence length 90
ec nomenclature
pdb deposition date 2008-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2vloA00
1BXIA 4QKOA 4F37A 1IMQA 2WPTA 2K5XA 2GYKA 3GJNA 2VLPA 1E0HA 4UHPB 2JBGA 2GZEA 2GZGA 1ZNVA 1EMVA 1GXHA 1GXGA 2GZJA 1UJZA 2ERHA 1FR2A 2JB0A 1AYIA 1IMPA 7CEIA 3GKLC 2VLQA 5EW5E 2K0DX 1MZ8A 2JAZA 1CEIA 3U43A 2NO8A 2GZFA 2GZIA 1UNKA 2VLNA 2VLOA
chains in the Genus database with same CATH superfamily
2LTEA 4U0BA 3NY7B 5HVCA 3DPHA 2LOLA 5F2NA 2QA4P 1VHNA 1KC8Q 2JGPA 5KP8B 1Q86Q 2EIAA 2KWLA 2GZJA 2PY8A 3LMOA 5HV8A 5CZDB 2AF8A 2LIUA 1X3OA 3CCEP 2X2BA 3B4QA 2WPTA 4DG9A 1VQ9P 2E1MA 2PEJA 3P05A 2CWOA 3GJNA 4U0CA 1YHQP 2Z45A 2K92A 2JO0A 2KGCA 4GR2A 5EW5E 4XFYA 1NQ4A 1MZ8A 3CD6P 2ROQA 5KP6B 5I4TG 2JYLA 1YJWP 2GZEA 1VQ4P 2AVAA 3G0VA 4GR6A 2L9FA 2LF4A 3H47A 2KG6A 3I56P 3G71P 1NJIQ 3DS1A 3GKLC 1Q7YQ 2KG8A 2XZ0D 1VQKP 1L0IA 2KGEA 2VLNA 2N6YA 2JQ4A 1RO2A 3OW2O 2KOQA 2KG9A 3GZLA 4H2WC 1GXGA 3CCQP 2AFEA 2M5RA 2PEOA 4IPYA 3CC7P 4IZ6A 2LPKA 2JAZA 1D1DA 4BPFA 3GZMA 2LL8A 3CE7A 3I55P 1N8RQ 5BS1A 2GDYA 1AF8A 5HGOA 2FACA 4HKGA 2M8NA 3H4EA 2BHVA 1IMPA 2VLQA 2MY5A 3U43A 2AFDA 3CPWO 2FQ1A 2K2QA 4COPA 3G4SP 2KW2A 4PXHB 3H0DA 4UHPB 2CQ8A 2KORA 2PEKA 5HGMA 5EJDA 1VQ5P 3G28A 1VQ6P 2GDWA 2JYGA 1IUQA 5F2KA 2FVEA 2FVFA 2L22A 3CXCO 1S72P 2MR8A 3G26A 3DS2A 3CCVP 2OARA 1EIAA 1KQSO 5F2OA 2KOSA 1GXHA 4NEOA 2FHSC 3EJEA 4WYMA 1KLPA 2FQ2A 3HYBA 5HGNA 1Z6MA 1VQNP 2MVUA 2N5IA 3NTEA 2Z46A 2N50A 3CMAP 1K30A 5BS2A 2GZGA 4PH1A 1RNIA 2JU2A 2M8LA 1YI2P 3CC4P 1VQOP 2JU1A 3CCUP 3G1GA 2K0XA 2FAEA 1EOQA 1YJ9P 2QEXP 1IMQA 2DGYA 2KODA 2MF4A 5JPAA 2N6ZA 1BAJA 4MRTC 1UJZA 5DCKA 2JB0A 1QVGO 5HGLA 2MR7A 2L4BA 2N5HA 3MGEA 2M8PA 2OTLP 2PNGA 1W2BO 1VQLP 2KOPA 1AYIA 1DV5A 3RG6C 1M6NA 3RG2A 1M90Q 2MD9A 1ACPA 2VSQA 2KR5A 1L0HA 1HY8A 1Q82Q 2OTJP 2EHTA 3LRYA 3HZQA 1QRJA 2PEIA 4M0IA 1VQMP 2FVAA 2CNRA 1QVFO 1AUMA 3G21A 1M1KQ 1YITP 1GPJA 2PEQA 2VLOA 4U0FA 2PENA 3DS4A 1M74A 2PEMA 4BPHA 3E2DA 1E6JP 1RO0A 2KGAA 1EMVA 2CGQA 2Z44A 1K8AQ 4R0MA 2XXMA 1FR2A 3Q20A 3G6EP 3CMEP 2LMLA 4QKOA 1HQBA 1A43A 4CA3A 2GYKA 3DS0A 4XFXA 2KOOA 4COCA 4XROA 3G29A 3DS5A 3DS3A 1F80D 3WBHA 2NO8A 2GZFA 2FADA 2GDXA 4QNBA 1BXIA 4U0DA 2BUOA 3CCRP 4XRQA 1VQPP 2L0QA 1DNYA 1E0HA 1VQ8P 2K94A 1OR5A 1K73Q 3CCSP 2LKIA 2P9XA 4H2YC 1YIJP 4PH0A 2KGDA 2L6EA 1K9MQ 1Q81Q 2FQ0A 4U0AA 2GZIA 1UNKA 3CCJP 2QNWA 3B5IA 3CCLP 4U0EA 4F37A 2K5XA 2XT1A 4PWVB 2VLPA 1T8KA 2JBGA 1VQ7P 2DNWA 3CC2P 2CG5B 2XV6A 2LIWA 2K93A 1VKUA 3G1IA 2EFJA 3EJBA 2K0DX 3DTJA 3VRLC 3M1MA 1M6EX 3EJDA 1ZMBA 2EHSA 2K0YA 2ONTA 1YJNP 2EG5A 2MVVA 1ZNVA 1KD1Q 4XFZA 2ERHA 1JJ2O 2XZ1C 3CCMP 7CEIA 2N98A 4BPGA 1A8OA 1CEIA 4H2XC 5KP7B
chains in the Genus database with same CATH topology
1BXIA 4QKOA 4F37A 1IMQA 2WPTA 2K5XA 2GYKA 3GJNA 2VLPA 1E0HA 4UHPB 2JBGA 2GZEA 2GZGA 1ZNVA 1EMVA 1GXHA 1GXGA 2GZJA 1UJZA 2ERHA 1FR2A 2JB0A 1AYIA 1IMPA 7CEIA 3GKLC 2VLQA 5EW5E 2K0DX 1MZ8A 2JAZA 1CEIA 3U43A 2NO8A 2GZFA 2GZIA 1UNKA 2VLNA 2VLOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BXI A;  4QKO A;  4F37 A;  1IMQ A;  2WPT A;  2K5X A;  2GYK A;  3GJN A;  2VLP A;  1E0H A;  4UHP B;  2JBG A;  2GZE A;  2GZG A;  1ZNV A;  1EMV A;  1GXH A;  1GXG A;  2GZJ A;  1UJZ A;  2ERH A;  1FR2 A;  2JB0 A;  1AYI A;  1IMP A;  7CEI A;  3GKL C;  2VLQ A;  5EW5 E;  2K0D X;  1MZ8 A;  2JAZ A;  1CEI A;  3U43 A;  2NO8 A;  2GZF A;  2GZI A;  1UNK A;  2VLN A;  2VLO A; 
#chains in the Genus database with same CATH topology
 2LTE A;  4U0B A;  3NY7 B;  5HVC A;  3DPH A;  2LOL A;  5F2N A;  2QA4 P;  1VHN A;  1KC8 Q;  2JGP A;  5KP8 B;  1Q86 Q;  2EIA A;  2KWL A;  2GZJ A;  2PY8 A;  3LMO A;  5HV8 A;  5CZD B;  2AF8 A;  2LIU A;  1X3O A;  3CCE P;  2X2B A;  3B4Q A;  2WPT A;  4DG9 A;  1VQ9 P;  2E1M A;  2PEJ A;  3P05 A;  2CWO A;  3GJN A;  4U0C A;  1YHQ P;  2Z45 A;  2K92 A;  2JO0 A;  2KGC A;  4GR2 A;  5EW5 E;  4XFY A;  1NQ4 A;  1MZ8 A;  3CD6 P;  2ROQ A;  5KP6 B;  5I4T G;  2JYL A;  1YJW P;  2GZE A;  1VQ4 P;  2AVA A;  3G0V A;  4GR6 A;  2L9F A;  2LF4 A;  3H47 A;  2KG6 A;  3I56 P;  3G71 P;  1NJI Q;  3DS1 A;  3GKL C;  1Q7Y Q;  2KG8 A;  2XZ0 D;  1VQK P;  1L0I A;  2KGE A;  2VLN A;  2N6Y A;  2JQ4 A;  1RO2 A;  3OW2 O;  2KOQ A;  2KG9 A;  3GZL A;  4H2W C;  1GXG A;  3CCQ P;  2AFE A;  2M5R A;  2PEO A;  4IPY A;  3CC7 P;  4IZ6 A;  2LPK A;  2JAZ A;  1D1D A;  4BPF A;  3GZM A;  2LL8 A;  3CE7 A;  3I55 P;  1N8R Q;  5BS1 A;  2GDY A;  1AF8 A;  5HGO A;  2FAC A;  4HKG A;  2M8N A;  3H4E A;  2BHV A;  1IMP A;  2VLQ A;  2MY5 A;  3U43 A;  2AFD A;  3CPW O;  2FQ1 A;  2K2Q A;  4COP A;  3G4S P;  2KW2 A;  4PXH B;  3H0D A;  4UHP B;  2CQ8 A;  2KOR A;  2PEK A;  5HGM A;  5EJD A;  1VQ5 P;  3G28 A;  1VQ6 P;  2GDW A;  2JYG A;  1IUQ A;  5F2K A;  2FVE A;  2FVF A;  2L22 A;  3CXC O;  1S72 P;  2MR8 A;  3G26 A;  3DS2 A;  3CCV P;  2OAR A;  1EIA A;  1KQS O;  5F2O A;  2KOS A;  1GXH A;  4NEO A;  2FHS C;  3EJE A;  4WYM A;  1KLP A;  2FQ2 A;  3HYB A;  5HGN A;  1Z6M A;  1VQN P;  2MVU A;  2N5I A;  3NTE A;  2Z46 A;  2N50 A;  3CMA P;  1K30 A;  5BS2 A;  2GZG A;  4PH1 A;  1RNI A;  2JU2 A;  2M8L A;  1YI2 P;  3CC4 P;  1VQO P;  2JU1 A;  3CCU P;  3G1G A;  2K0X A;  2FAE A;  1EOQ A;  1YJ9 P;  2QEX P;  1IMQ A;  2DGY A;  2KOD A;  2MF4 A;  5JPA A;  2N6Z A;  1BAJ A;  4MRT C;  1UJZ A;  5DCK A;  2JB0 A;  1QVG O;  5HGL A;  2MR7 A;  2L4B A;  2N5H A;  3MGE A;  2M8P A;  2OTL P;  2PNG A;  1W2B O;  1VQL P;  2KOP A;  1AYI A;  1DV5 A;  3RG6 C;  1M6N A;  3RG2 A;  1M90 Q;  2MD9 A;  1ACP A;  2VSQ A;  2KR5 A;  1L0H A;  1HY8 A;  1Q82 Q;  2OTJ P;  2EHT A;  3LRY A;  3HZQ A;  1QRJ A;  2PEI A;  4M0I A;  1VQM P;  2FVA A;  2CNR A;  1QVF O;  1AUM A;  3G21 A;  1M1K Q;  1YIT P;  1GPJ A;  2PEQ A;  2VLO A;  4U0F A;  2PEN A;  3DS4 A;  1M74 A;  2PEM A;  4BPH A;  3E2D A;  1E6J P;  1RO0 A;  2KGA A;  1EMV A;  2CGQ A;  2Z44 A;  1K8A Q;  4R0M A;  2XXM A;  1FR2 A;  3Q20 A;  3G6E P;  3CME P;  2LML A;  4QKO A;  1HQB A;  1A43 A;  4CA3 A;  2GYK A;  3DS0 A;  4XFX A;  2KOO A;  4COC A;  4XRO A;  3G29 A;  3DS5 A;  3DS3 A;  1F80 D;  3WBH A;  2NO8 A;  2GZF A;  2FAD A;  2GDX A;  4QNB A;  1BXI A;  4U0D A;  2BUO A;  3CCR P;  4XRQ A;  1VQP P;  2L0Q A;  1DNY A;  1E0H A;  1VQ8 P;  2K94 A;  1OR5 A;  1K73 Q;  3CCS P;  2LKI A;  2P9X A;  4H2Y C;  1YIJ P;  4PH0 A;  2KGD A;  2L6E A;  1K9M Q;  1Q81 Q;  2FQ0 A;  4U0A A;  2GZI A;  1UNK A;  3CCJ P;  2QNW A;  3B5I A;  3CCL P;  4U0E A;  4F37 A;  2K5X A;  2XT1 A;  4PWV B;  2VLP A;  1T8K A;  2JBG A;  1VQ7 P;  2DNW A;  3CC2 P;  2CG5 B;  2XV6 A;  2LIW A;  2K93 A;  1VKU A;  3G1I A;  2EFJ A;  3EJB A;  2K0D X;  3DTJ A;  3VRL C;  3M1M A;  1M6E X;  3EJD A;  1ZMB A;  2EHS A;  2K0Y A;  2ONT A;  1YJN P;  2EG5 A;  2MVV A;  1ZNV A;  1KD1 Q;  4XFZ A;  2ERH A;  1JJ2 O;  2XZ1 C;  3CCM P;  7CEI A;  2N98 A;  4BPG A;  1A8O A;  1CEI A;  4H2X C;  5KP7 B; 
#chains in the Genus database with same CATH homology
 1BXI A;  4QKO A;  4F37 A;  1IMQ A;  2WPT A;  2K5X A;  2GYK A;  3GJN A;  2VLP A;  1E0H A;  4UHP B;  2JBG A;  2GZE A;  2GZG A;  1ZNV A;  1EMV A;  1GXH A;  1GXG A;  2GZJ A;  1UJZ A;  2ERH A;  1FR2 A;  2JB0 A;  1AYI A;  1IMP A;  7CEI A;  3GKL C;  2VLQ A;  5EW5 E;  2K0D X;  1MZ8 A;  2JAZ A;  1CEI A;  3U43 A;  2NO8 A;  2GZF A;  2GZI A;  1UNK A;  2VLN A;  2VLO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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