2VLOA

K97a mutant of e9 dnase domain in complex with im9
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
90
structure length
90
Chain Sequence
KHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQGLEHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Experimental and Computational Analyses of the Energetic Basis for Dual Recognition of Immunity Proteins by Colicin Endonucleases.
pubmed doi rcsb
molecule tags Protein binding
source organism Escherichia coli
molecule keywords COLICIN-E9 IMMUNITY PROTEIN
total genus 28
structure length 90
sequence length 90
ec nomenclature
pdb deposition date 2008-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2vloA00
3U43A 2GYKA 1UJZA 2ERHA 4UHPB 2JBGA 2VLNA 1EMVA 3GKLC 1CEIA 2WPTA 1FR2A 2VLPA 2GZIA 2GZEA 1UNKA 2VLOA 2K0DX 2GZGA 2VLQA 7CEIA 2GZFA 2NO8A 4F37A 1AYIA 1MZ8A 1BXIA 1IMPA 4QKOA 2GZJA 2JAZA 1ZNVA 2K5XA 5EW5E 3GJNA 1IMQA 1GXHA 2JB0A 1GXGA 1E0HA
chains in the Genus database with same CATH superfamily
3CE7A 1M6NA 3H47A 2JGPA 2LMLA 2VLNA 3EJDA 4PH0A 3G71P 2K92A 3DS3A 1VQMP 2FQ2A 3HYBA 4WYMA 3EJBA 2M8PA 1RO0A 2L4BA 2K5XA 3CCEP 2CGQA 1VQ4P 1GXGA 1RNIA 5KP8B 2LIWA 3CCMP 2KWLA 3MGEA 2OARA 4IPYA 3LRYA 2K0DX 2GZFA 2CNRA 1W2BO 1D1DA 3CCQP 3DTJA 2XT1A 1N8RQ 5JPAA 3GJNA 2K0XA 3CC7P 1NQ4A 1ACPA 2AVAA 2MY5A 2GDWA 2KGDA 3G1IA 2P9XA 2ONTA 1ZMBA 2XV6A 3RG2A 2PEQA 2LOLA 3OW2O 5HVCA 3CD6P 3VRLC 4BPHA 1S72P 3DPHA 2EG5A 4U0EA 2LTEA 3GZMA 4IZ6A 2KOPA 1CEIA 1Q82Q 1YJNP 2GZEA 2VLQA 3G0VA 2E1MA 1VQ7P 2XZ0D 2EIAA 3G26A 5HGNA 5BS2A 2FVAA 2VSQA 1IMPA 3DS1A 5HGMA 5I4TG 2KR5A 2KGAA 2M8LA 2CWOA 3G1GA 1QVFO 3WBHA 2FAEA 4CA3A 2L22A 1EMVA 4U0DA 2PY8A 4U0BA 2XXMA 4COPA 2LL8A 4XFYA 1QRJA 4PWVB 1L0HA 3CXCO 4BPGA 2GDXA 1YJWP 2N50A 2FACA 1F80D 2JAZA 5HV8A 3E2DA 2ERHA 2CQ8A 5BS1A 2DNWA 4HKGA 1BAJA 2KGCA 3RG6C 4PH1A 2K94A 1GPJA 4QKOA 2FQ1A 1M1KQ 2MVVA 2FADA 4UHPB 1L0IA 3DS0A 1HQBA 1E6JP 2MF4A 2VLOA 2JU1A 1A43A 2NO8A 2PEOA 2DGYA 4DG9A 4H2YC 3M1MA 3DS5A 2AF8A 4R0MA 2JB0A 1M90Q 1YHQP 2OTLP 2MVUA 4XFXA 3CCRP 2EHTA 5F2KA 2JBGA 3H4EA 2VLPA 2AFDA 2EFJA 3GZLA 3EJEA 1OR5A 3HZQA 2K2QA 1M6EX 4F37A 4U0FA 3NY7B 1KC8Q 1K30A 2OTJP 3H0DA 2L0QA 4BPFA 2BUOA 1X3OA 2CG5B 5F2OA 4XFZA 4PXHB 2KG9A 1VQ6P 4GR6A 1BXIA 1K9MQ 2K0YA 1VQ9P 1GXHA 1T8KA 2PEIA 3B4QA 1EIAA 2FVFA 2MR7A 4QNBA 1UNKA 2M8NA 2LPKA 3P05A 3G6EP 1HY8A 3G21A 3DS4A 1KLPA 2QEXP 5KP7B 1YITP 1AYIA 5DCKA 2KGEA 2Z45A 1VQOP 4H2WC 1VQNP 3B5IA 1VQ8P 2EHSA 1UJZA 2WPTA 2FQ0A 3CCSP 2GZIA 2BHVA 5EJDA 3CCUP 2FVEA 1KD1Q 4XRQA 2Z46A 5F2NA 1VQPP 1MZ8A 1DV5A 2GZJA 3I56P 2GDYA 2KOSA 2N5IA 2KG6A 2KG8A 1K73Q 3G4SP 1IUQA 2GZGA 1EOQA 7CEIA 1RO2A 1DNYA 1A8OA 1Z6MA 4NEOA 2KW2A 1VHNA 1YJ9P 1Q86Q 2PEKA 4COCA 2M5RA 1AUMA 1NJIQ 4M0IA 1KQSO 2JO0A 2MR8A 3GKLC 2PENA 2KOOA 2JYGA 3CC2P 3CC4P 2LKIA 3CCLP 3DS2A 2PEJA 2PNGA 5EW5E 1YIJP 3NTEA 3U43A 1Q81Q 2ROQA 4XROA 1Q7YQ 4U0CA 2KODA 1M74A 2JU2A 5KP6B 5HGLA 3CCJP 2QNWA 2L6EA 1K8AQ 1QVGO 2JQ4A 2K93A 2QA4P 3Q20A 1VQKP 1VKUA 2L9FA 3G28A 3LMOA 2X2BA 2JYLA 2N6ZA 2FHSC 2KOQA 4U0AA 4H2XC 1VQ5P 2N98A 2PEMA 1VQLP 1IMQA 2MD9A 2LF4A 1AF8A 2GYKA 2N5HA 3G29A 5CZDB 1FR2A 5HGOA 2XZ1C 2LIUA 4MRTC 2N6YA 2AFEA 3CCVP 3CPWO 3CMEP 2Z44A 2KORA 1JJ2O 1ZNVA 4GR2A 3CMAP 1E0HA 3I55P 1YI2P
chains in the Genus database with same CATH topology
3U43A 2GYKA 1UJZA 2ERHA 4UHPB 2JBGA 2VLNA 1EMVA 3GKLC 1CEIA 2WPTA 1FR2A 2VLPA 2GZIA 2GZEA 1UNKA 2VLOA 2K0DX 2GZGA 2VLQA 7CEIA 2GZFA 2NO8A 4F37A 1AYIA 1MZ8A 1BXIA 1IMPA 4QKOA 2GZJA 2JAZA 1ZNVA 2K5XA 5EW5E 3GJNA 1IMQA 1GXHA 2JB0A 1GXGA 1E0HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U43 A;  2GYK A;  1UJZ A;  2ERH A;  4UHP B;  2JBG A;  2VLN A;  1EMV A;  3GKL C;  1CEI A;  2WPT A;  1FR2 A;  2VLP A;  2GZI A;  2GZE A;  1UNK A;  2VLO A;  2K0D X;  2GZG A;  2VLQ A;  7CEI A;  2GZF A;  2NO8 A;  4F37 A;  1AYI A;  1MZ8 A;  1BXI A;  1IMP A;  4QKO A;  2GZJ A;  2JAZ A;  1ZNV A;  2K5X A;  5EW5 E;  3GJN A;  1IMQ A;  1GXH A;  2JB0 A;  1GXG A;  1E0H A; 
#chains in the Genus database with same CATH topology
 3CE7 A;  1M6N A;  3H47 A;  2JGP A;  2LML A;  2VLN A;  3EJD A;  4PH0 A;  3G71 P;  2K92 A;  3DS3 A;  1VQM P;  2FQ2 A;  3HYB A;  4WYM A;  3EJB A;  2M8P A;  1RO0 A;  2L4B A;  2K5X A;  3CCE P;  2CGQ A;  1VQ4 P;  1GXG A;  1RNI A;  5KP8 B;  2LIW A;  3CCM P;  2KWL A;  3MGE A;  2OAR A;  4IPY A;  3LRY A;  2K0D X;  2GZF A;  2CNR A;  1W2B O;  1D1D A;  3CCQ P;  3DTJ A;  2XT1 A;  1N8R Q;  5JPA A;  3GJN A;  2K0X A;  3CC7 P;  1NQ4 A;  1ACP A;  2AVA A;  2MY5 A;  2GDW A;  2KGD A;  3G1I A;  2P9X A;  2ONT A;  1ZMB A;  2XV6 A;  3RG2 A;  2PEQ A;  2LOL A;  3OW2 O;  5HVC A;  3CD6 P;  3VRL C;  4BPH A;  1S72 P;  3DPH A;  2EG5 A;  4U0E A;  2LTE A;  3GZM A;  4IZ6 A;  2KOP A;  1CEI A;  1Q82 Q;  1YJN P;  2GZE A;  2VLQ A;  3G0V A;  2E1M A;  1VQ7 P;  2XZ0 D;  2EIA A;  3G26 A;  5HGN A;  5BS2 A;  2FVA A;  2VSQ A;  1IMP A;  3DS1 A;  5HGM A;  5I4T G;  2KR5 A;  2KGA A;  2M8L A;  2CWO A;  3G1G A;  1QVF O;  3WBH A;  2FAE A;  4CA3 A;  2L22 A;  1EMV A;  4U0D A;  2PY8 A;  4U0B A;  2XXM A;  4COP A;  2LL8 A;  4XFY A;  1QRJ A;  4PWV B;  1L0H A;  3CXC O;  4BPG A;  2GDX A;  1YJW P;  2N50 A;  2FAC A;  1F80 D;  2JAZ A;  5HV8 A;  3E2D A;  2ERH A;  2CQ8 A;  5BS1 A;  2DNW A;  4HKG A;  1BAJ A;  2KGC A;  3RG6 C;  4PH1 A;  2K94 A;  1GPJ A;  4QKO A;  2FQ1 A;  1M1K Q;  2MVV A;  2FAD A;  4UHP B;  1L0I A;  3DS0 A;  1HQB A;  1E6J P;  2MF4 A;  2VLO A;  2JU1 A;  1A43 A;  2NO8 A;  2PEO A;  2DGY A;  4DG9 A;  4H2Y C;  3M1M A;  3DS5 A;  2AF8 A;  4R0M A;  2JB0 A;  1M90 Q;  1YHQ P;  2OTL P;  2MVU A;  4XFX A;  3CCR P;  2EHT A;  5F2K A;  2JBG A;  3H4E A;  2VLP A;  2AFD A;  2EFJ A;  3GZL A;  3EJE A;  1OR5 A;  3HZQ A;  2K2Q A;  1M6E X;  4F37 A;  4U0F A;  3NY7 B;  1KC8 Q;  1K30 A;  2OTJ P;  3H0D A;  2L0Q A;  4BPF A;  2BUO A;  1X3O A;  2CG5 B;  5F2O A;  4XFZ A;  4PXH B;  2KG9 A;  1VQ6 P;  4GR6 A;  1BXI A;  1K9M Q;  2K0Y A;  1VQ9 P;  1GXH A;  1T8K A;  2PEI A;  3B4Q A;  1EIA A;  2FVF A;  2MR7 A;  4QNB A;  1UNK A;  2M8N A;  2LPK A;  3P05 A;  3G6E P;  1HY8 A;  3G21 A;  3DS4 A;  1KLP A;  2QEX P;  5KP7 B;  1YIT P;  1AYI A;  5DCK A;  2KGE A;  2Z45 A;  1VQO P;  4H2W C;  1VQN P;  3B5I A;  1VQ8 P;  2EHS A;  1UJZ A;  2WPT A;  2FQ0 A;  3CCS P;  2GZI A;  2BHV A;  5EJD A;  3CCU P;  2FVE A;  1KD1 Q;  4XRQ A;  2Z46 A;  5F2N A;  1VQP P;  1MZ8 A;  1DV5 A;  2GZJ A;  3I56 P;  2GDY A;  2KOS A;  2N5I A;  2KG6 A;  2KG8 A;  1K73 Q;  3G4S P;  1IUQ A;  2GZG A;  1EOQ A;  7CEI A;  1RO2 A;  1DNY A;  1A8O A;  1Z6M A;  4NEO A;  2KW2 A;  1VHN A;  1YJ9 P;  1Q86 Q;  2PEK A;  4COC A;  2M5R A;  1AUM A;  1NJI Q;  4M0I A;  1KQS O;  2JO0 A;  2MR8 A;  3GKL C;  2PEN A;  2KOO A;  2JYG A;  3CC2 P;  3CC4 P;  2LKI A;  3CCL P;  3DS2 A;  2PEJ A;  2PNG A;  5EW5 E;  1YIJ P;  3NTE A;  3U43 A;  1Q81 Q;  2ROQ A;  4XRO A;  1Q7Y Q;  4U0C A;  2KOD A;  1M74 A;  2JU2 A;  5KP6 B;  5HGL A;  3CCJ P;  2QNW A;  2L6E A;  1K8A Q;  1QVG O;  2JQ4 A;  2K93 A;  2QA4 P;  3Q20 A;  1VQK P;  1VKU A;  2L9F A;  3G28 A;  3LMO A;  2X2B A;  2JYL A;  2N6Z A;  2FHS C;  2KOQ A;  4U0A A;  4H2X C;  1VQ5 P;  2N98 A;  2PEM A;  1VQL P;  1IMQ A;  2MD9 A;  2LF4 A;  1AF8 A;  2GYK A;  2N5H A;  3G29 A;  5CZD B;  1FR2 A;  5HGO A;  2XZ1 C;  2LIU A;  4MRT C;  2N6Y A;  2AFE A;  3CCV P;  3CPW O;  3CME P;  2Z44 A;  2KOR A;  1JJ2 O;  1ZNV A;  4GR2 A;  3CMA P;  1E0H A;  3I55 P;  1YI2 P; 
#chains in the Genus database with same CATH homology
 3U43 A;  2GYK A;  1UJZ A;  2ERH A;  4UHP B;  2JBG A;  2VLN A;  1EMV A;  3GKL C;  1CEI A;  2WPT A;  1FR2 A;  2VLP A;  2GZI A;  2GZE A;  1UNK A;  2VLO A;  2K0D X;  2GZG A;  2VLQ A;  7CEI A;  2GZF A;  2NO8 A;  4F37 A;  1AYI A;  1MZ8 A;  1BXI A;  1IMP A;  4QKO A;  2GZJ A;  2JAZ A;  1ZNV A;  2K5X A;  5EW5 E;  3GJN A;  1IMQ A;  1GXH A;  2JB0 A;  1GXG A;  1E0H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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