2L6EA

Nmr structure of the monomeric mutant c-terminal domain of hiv-1 capsid in complex with stapled peptide inhibitor
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
94
structure length
94
Chain Sequence
SGLVPRGSHMTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein/inhibitor
source organism Human immunodeficiency virus 1
publication title Solution structure of a hydrocarbon stapled peptide inhibitor in complex with monomeric C-terminal domain of HIV-1 capsid.
pubmed doi rcsb
molecule keywords Capsid protein p24
total genus 28
structure length 94
sequence length 94
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2010-11-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2l6eA00
4U0DA 3G1IA 5HGNA 1QRJA 4U0AA 4U0CA 3VRLC 3DS0A 4IPYA 2XT1A 3G0VA 3NTEA 3DS3A 4U0EA 4U0FA 4COPA 2KODA 4XFXA 4PH0A 1A43A 3G29A 5I4TG 2JYLA 2EIAA 3DS2A 3G26A 3H47A 4XFZA 5HGMA 3G28A 1BAJA 3DPHA 5HGLA 4COCA 5HGOA 4WYMA 4M0IA 2XV6A 4QNBA 5DCKA 3G21A 2JYGA 2XXMA 3DS4A 1EIAA 3G1GA 2JO0A 3P05A 4XRQA 5JPAA 1A8OA 3MGEA 1EOQA 1AUMA 4PH1A 3DS5A 2L6EA 3DS1A 3H4EA 2M8LA 4XROA 2ONTA 2LF4A 3LRYA 1D1DA 1E6JP 4U0BA 3DTJA 2M8PA 4XFYA 2BUOA 2M8NA
chains in the Genus database with same CATH superfamily
4PXHB 1Q81Q 3EJDA 2LTEA 2JU1A 3G29A 4R0MA 4BPHA 4H2WC 4WYMA 1FR2A 2GZGA 5BS2A 2GZJA 2QEXP 2QA4P 2Z44A 1YITP 2K0YA 4XROA 1VQMP 1E6JP 2KGEA 3CC7P 2EG5A 2Z45A 2M8NA 2AFEA 1KLPA 3GJNA 1Z6MA 3NY7B 4QKOA 1D1DA 1A43A 3GKLC 1IMPA 3DS2A 1VQ4P 1VQPP 2LOLA 1VQ9P 2GZFA 2K93A 2K94A 3OW2O 4H2XC 4NEOA 3G4SP 3CCUP 3EJBA 2MF4A 2OTLP 4U0DA 3RG6C 3RG2A 2EHSA 1VQOP 4U0AA 2PEKA 4GR2A 3G21A 2KGDA 3DS5A 3B4QA 2ROQA 2QNWA 5EJDA 1NJIQ 2N50A 2XT1A 4U0EA 1K9MQ 3CCMP 1EMVA 2JYLA 3H47A 3DPHA 2CNRA 5HGLA 2KOQA 1HY8A 3E2DA 1L0IA 4PH1A 1YHQP 2N5IA 2M8LA 2K0XA 4IZ6A 2ERHA 2FVEA 2BUOA 1DNYA 2N5HA 2N98A 1CEIA 2PEOA 3NTEA 4XFXA 2VLOA 3I55P 2GDYA 4COCA 1QVFO 1ZNVA 3CCEP 2CWOA 2LL8A 3CCRP 1W2BO 2M8PA 3GZLA 2KGAA 1YI2P 3Q20A 2DGYA 5EW5E 4F37A 2PEMA 1BAJA 2JGPA 2XXMA 1BXIA 1VQ5P 2NO8A 5CZDB 2KW2A 1AYIA 1M74A 1X3OA 3CCVP 4BPFA 3GZMA 2MVVA 2AVAA 2FACA 2JAZA 1UJZA 2KOOA 5HGOA 3CXCO 1VKUA 3G1GA 2EFJA 2DNWA 2KR5A 1K73Q 2E1MA 1DV5A 3G0VA 2P9XA 4PH0A 1VQLP 3HYBA 3CD6P 2KG6A 2JYGA 2N6ZA 2L6EA 5KP8B 2KWLA 1IUQA 2VLQA 3HZQA 2GZEA 5F2KA 2CG5B 2WPTA 2JB0A 3DS3A 4HKGA 2KGCA 2JU2A 1KC8Q 1M90Q 1IMQA 1Q7YQ 3DS4A 3M1MA 1A8OA 1NQ4A 1AUMA 1GXGA 1MZ8A 2GDWA 2FQ2A 5HV8A 2K2QA 2FVAA 1QRJA 2GYKA 2K0DX 1M1KQ 2KODA 2EHTA 2PY8A 2EIAA 1OR5A 3CE7A 4M0IA 4GR6A 2LKIA 3G6EP 3CCSP 1UNKA 2KOSA 2OTJP 4H2YC 1VQNP 5BS1A 2KOPA 2LIWA 2MVUA 1GPJA 2L9FA 2KORA 2VSQA 2PENA 3B5IA 2K92A 1N8RQ 3G26A 1YIJP 2MD9A 1K30A 2X2BA 5F2OA 3MGEA 4CA3A 1QVGO 1K8AQ 2LPKA 2FHSC 2CGQA 4XFYA 2MR7A 3CCJP 1Q82Q 3VRLC 1GXHA 1ACPA 2GZIA 1S72P 2VLNA 4U0FA 2L4BA 2PEIA 5I4TG 5KP6B 1YJNP 2FADA 2AFDA 2PEQA 2OARA 3U43A 2FQ1A 4XRQA 1HQBA 3H4EA 2PNGA 1F80D 4U0BA 3G71P 1Q86Q 4PWVB 1VQ7P 3I56P 4UHPB 2FVFA 5HVCA 2PEJA 1JJ2O 4QNBA 1T8KA 1RNIA 2JO0A 1EOQA 1VQ8P 2LMLA 1VQ6P 1RO2A 2XZ1C 3CC4P 2FAEA 1YJWP 2GDXA 3CCLP 2L0QA 2MY5A 4COPA 5HGMA 1VQKP 3P05A 1EIAA 5F2NA 1RO0A 2ONTA 2LF4A 2AF8A 3DTJA 2KG8A 3LMOA 2MR8A 3G28A 1VHNA 3CC2P 3CPWO 4IPYA 1AF8A 4DG9A 4BPGA 4XFZA 3CCQP 2L22A 5DCKA 4MRTC 5JPAA 1YJ9P 7CEIA 2Z46A 2BHVA 2VLPA 3DS1A 5KP7B 1KQSO 2JBGA 3CMEP 3H0DA 2JQ4A 2M5RA 1ZMBA 2K5XA 3G1IA 1E0HA 5HGNA 4U0CA 1M6EX 2KG9A 3WBHA 3DS0A 2LIUA 3CMAP 2XZ0D 2FQ0A 2XV6A 1M6NA 2CQ8A 1L0HA 2N6YA 3EJEA 3LRYA 1KD1Q
chains in the Genus database with same CATH topology
1Q81Q 5F2KA 2PEOA 2PEJA 3NTEA 3DS3A 4XFXA 3G29A 3I55P 1KC8Q 1M90Q 1JJ2O 4COCA 1QVFO 4WYMA 1Q7YQ 4QNBA 5BS2A 3DS4A 3M1MA 1RNIA 2CWOA 2JO0A 3CCEP 1A8OA 1EOQA 1AUMA 2QEXP 2Z44A 3CCRP 2QA4P 1YITP 1VQ8P 4XROA 1VQ6P 1RO2A 1VQMP 3CC4P 1E6JP 3CC7P 1YJWP 2EG5A 1W2BO 2M8PA 3CCLP 2Z45A 2M8NA 1QRJA 1YI2P 3Q20A 2DGYA 1D1DA 1M1KQ 4COPA 2KODA 1A43A 2PY8A 2EIAA 3DS2A 5HGMA 2PEMA 1VQKP 1BAJA 4M0IA 4GR6A 1VQ4P 2XXMA 3P05A 1EIAA 5F2NA 3G6EP 3CCSP 1VQPP 1RO0A 1VQ9P 1VQ5P 2OTJP 2ONTA 1VQNP 5BS1A 1M74A 2LF4A 3DTJA 3OW2O 3CCVP 3G4SP 3CCUP 2OTLP 3G28A 4U0DA 3RG6C 1VQOP 3CC2P 4U0AA 3CPWO 2PENA 4IPYA 3B5IA 1N8RQ 2PEKA 3G26A 4GR2A 1YIJP 4XFZA 3CCQP 5HGOA 3CXCO 5DCKA 1K30A 3G21A 5JPAA 1YJ9P 3G1GA 2EFJA 2Z46A 5F2OA 3MGEA 2BHVA 3DS5A 3DS1A 1QVGO 1K8AQ 1KQSO 3CMEP 3H0DA 1K73Q 1ZMBA 4XFYA 1NJIQ 2E1MA 3CCJP 3G1IA 1Q82Q 5HGNA 3VRLC 4U0CA 1M6EX 3WBHA 3DS0A 2XT1A 3G0VA 1S72P 4U0EA 2P9XA 2PEIA 4U0FA 4PH0A 5I4TG 3CMAP 3CCMP 1YJNP 1K9MQ 1VQLP 3HYBA 2JYLA 3CD6P 3H47A 2PEQA 3DPHA 2OARA 2XV6A 5HGLA 2JYGA 1M6NA 3E2DA 4XRQA 1VQ7P 4PH1A 1YHQP 2L6EA 3H4EA 2M8LA 1IUQA 3LRYA 1KD1Q 4U0BA 3G71P 1Q86Q 3HZQA 2BUOA 3I56P
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4U0D A;  3G1I A;  5HGN A;  1QRJ A;  4U0A A;  4U0C A;  3VRL C;  3DS0 A;  4IPY A;  2XT1 A;  3G0V A;  3NTE A;  3DS3 A;  4U0E A;  4U0F A;  4COP A;  2KOD A;  4XFX A;  4PH0 A;  1A43 A;  3G29 A;  5I4T G;  2JYL A;  2EIA A;  3DS2 A;  3G26 A;  3H47 A;  4XFZ A;  5HGM A;  3G28 A;  1BAJ A;  3DPH A;  5HGL A;  4COC A;  5HGO A;  4WYM A;  4M0I A;  2XV6 A;  4QNB A;  5DCK A;  3G21 A;  2JYG A;  2XXM A;  3DS4 A;  1EIA A;  3G1G A;  2JO0 A;  3P05 A;  4XRQ A;  5JPA A;  1A8O A;  3MGE A;  1EOQ A;  1AUM A;  4PH1 A;  3DS5 A;  2L6E A;  3DS1 A;  3H4E A;  2M8L A;  4XRO A;  2ONT A;  2LF4 A;  3LRY A;  1D1D A;  1E6J P;  4U0B A;  3DTJ A;  2M8P A;  4XFY A;  2BUO A;  2M8N A; 
#chains in the Genus database with same CATH topology
 4PXH B;  1Q81 Q;  3EJD A;  2LTE A;  2JU1 A;  3G29 A;  4R0M A;  4BPH A;  4H2W C;  4WYM A;  1FR2 A;  2GZG A;  5BS2 A;  2GZJ A;  2QEX P;  2QA4 P;  2Z44 A;  1YIT P;  2K0Y A;  4XRO A;  1VQM P;  1E6J P;  2KGE A;  3CC7 P;  2EG5 A;  2Z45 A;  2M8N A;  2AFE A;  1KLP A;  3GJN A;  1Z6M A;  3NY7 B;  4QKO A;  1D1D A;  1A43 A;  3GKL C;  1IMP A;  3DS2 A;  1VQ4 P;  1VQP P;  2LOL A;  1VQ9 P;  2GZF A;  2K93 A;  2K94 A;  3OW2 O;  4H2X C;  4NEO A;  3G4S P;  3CCU P;  3EJB A;  2MF4 A;  2OTL P;  4U0D A;  3RG6 C;  3RG2 A;  2EHS A;  1VQO P;  4U0A A;  2PEK A;  4GR2 A;  3G21 A;  2KGD A;  3DS5 A;  3B4Q A;  2ROQ A;  2QNW A;  5EJD A;  1NJI Q;  2N50 A;  2XT1 A;  4U0E A;  1K9M Q;  3CCM P;  1EMV A;  2JYL A;  3H47 A;  3DPH A;  2CNR A;  5HGL A;  2KOQ A;  1HY8 A;  3E2D A;  1L0I A;  4PH1 A;  1YHQ P;  2N5I A;  2M8L A;  2K0X A;  4IZ6 A;  2ERH A;  2FVE A;  2BUO A;  1DNY A;  2N5H A;  2N98 A;  1CEI A;  2PEO A;  3NTE A;  4XFX A;  2VLO A;  3I55 P;  2GDY A;  4COC A;  1QVF O;  1ZNV A;  3CCE P;  2CWO A;  2LL8 A;  3CCR P;  1W2B O;  2M8P A;  3GZL A;  2KGA A;  1YI2 P;  3Q20 A;  2DGY A;  5EW5 E;  4F37 A;  2PEM A;  1BAJ A;  2JGP A;  2XXM A;  1BXI A;  1VQ5 P;  2NO8 A;  5CZD B;  2KW2 A;  1AYI A;  1M74 A;  1X3O A;  3CCV P;  4BPF A;  3GZM A;  2MVV A;  2AVA A;  2FAC A;  2JAZ A;  1UJZ A;  2KOO A;  5HGO A;  3CXC O;  1VKU A;  3G1G A;  2EFJ A;  2DNW A;  2KR5 A;  1K73 Q;  2E1M A;  1DV5 A;  3G0V A;  2P9X A;  4PH0 A;  1VQL P;  3HYB A;  3CD6 P;  2KG6 A;  2JYG A;  2N6Z A;  2L6E A;  5KP8 B;  2KWL A;  1IUQ A;  2VLQ A;  3HZQ A;  2GZE A;  5F2K A;  2CG5 B;  2WPT A;  2JB0 A;  3DS3 A;  4HKG A;  2KGC A;  2JU2 A;  1KC8 Q;  1M90 Q;  1IMQ A;  1Q7Y Q;  3DS4 A;  3M1M A;  1A8O A;  1NQ4 A;  1AUM A;  1GXG A;  1MZ8 A;  2GDW A;  2FQ2 A;  5HV8 A;  2K2Q A;  2FVA A;  1QRJ A;  2GYK A;  2K0D X;  1M1K Q;  2KOD A;  2EHT A;  2PY8 A;  2EIA A;  1OR5 A;  3CE7 A;  4M0I A;  4GR6 A;  2LKI A;  3G6E P;  3CCS P;  1UNK A;  2KOS A;  2OTJ P;  4H2Y C;  1VQN P;  5BS1 A;  2KOP A;  2LIW A;  2MVU A;  1GPJ A;  2L9F A;  2KOR A;  2VSQ A;  2PEN A;  3B5I A;  2K92 A;  1N8R Q;  3G26 A;  1YIJ P;  2MD9 A;  1K30 A;  2X2B A;  5F2O A;  3MGE A;  4CA3 A;  1QVG O;  1K8A Q;  2LPK A;  2FHS C;  2CGQ A;  4XFY A;  2MR7 A;  3CCJ P;  1Q82 Q;  3VRL C;  1GXH A;  1ACP A;  2GZI A;  1S72 P;  2VLN A;  4U0F A;  2L4B A;  2PEI A;  5I4T G;  5KP6 B;  1YJN P;  2FAD A;  2AFD A;  2PEQ A;  2OAR A;  3U43 A;  2FQ1 A;  4XRQ A;  1HQB A;  3H4E A;  2PNG A;  1F80 D;  4U0B A;  3G71 P;  1Q86 Q;  4PWV B;  1VQ7 P;  3I56 P;  4UHP B;  2FVF A;  5HVC A;  2PEJ A;  1JJ2 O;  4QNB A;  1T8K A;  1RNI A;  2JO0 A;  1EOQ A;  1VQ8 P;  2LML A;  1VQ6 P;  1RO2 A;  2XZ1 C;  3CC4 P;  2FAE A;  1YJW P;  2GDX A;  3CCL P;  2L0Q A;  2MY5 A;  4COP A;  5HGM A;  1VQK P;  3P05 A;  1EIA A;  5F2N A;  1RO0 A;  2ONT A;  2LF4 A;  2AF8 A;  3DTJ A;  2KG8 A;  3LMO A;  2MR8 A;  3G28 A;  1VHN A;  3CC2 P;  3CPW O;  4IPY A;  1AF8 A;  4DG9 A;  4BPG A;  4XFZ A;  3CCQ P;  2L22 A;  5DCK A;  4MRT C;  5JPA A;  1YJ9 P;  7CEI A;  2Z46 A;  2BHV A;  2VLP A;  3DS1 A;  5KP7 B;  1KQS O;  2JBG A;  3CME P;  3H0D A;  2JQ4 A;  2M5R A;  1ZMB A;  2K5X A;  3G1I A;  1E0H A;  5HGN A;  4U0C A;  1M6E X;  2KG9 A;  3WBH A;  3DS0 A;  2LIU A;  3CMA P;  2XZ0 D;  2FQ0 A;  2XV6 A;  1M6N A;  2CQ8 A;  1L0H A;  2N6Y A;  3EJE A;  3LRY A;  1KD1 Q; 
#chains in the Genus database with same CATH homology
 1Q81 Q;  5F2K A;  2PEO A;  2PEJ A;  3NTE A;  3DS3 A;  4XFX A;  3G29 A;  3I55 P;  1KC8 Q;  1M90 Q;  1JJ2 O;  4COC A;  1QVF O;  4WYM A;  1Q7Y Q;  4QNB A;  5BS2 A;  3DS4 A;  3M1M A;  1RNI A;  2CWO A;  2JO0 A;  3CCE P;  1A8O A;  1EOQ A;  1AUM A;  2QEX P;  2Z44 A;  3CCR P;  2QA4 P;  1YIT P;  1VQ8 P;  4XRO A;  1VQ6 P;  1RO2 A;  1VQM P;  3CC4 P;  1E6J P;  3CC7 P;  1YJW P;  2EG5 A;  1W2B O;  2M8P A;  3CCL P;  2Z45 A;  2M8N A;  1QRJ A;  1YI2 P;  3Q20 A;  2DGY A;  1D1D A;  1M1K Q;  4COP A;  2KOD A;  1A43 A;  2PY8 A;  2EIA A;  3DS2 A;  5HGM A;  2PEM A;  1VQK P;  1BAJ A;  4M0I A;  4GR6 A;  1VQ4 P;  2XXM A;  3P05 A;  1EIA A;  5F2N A;  3G6E P;  3CCS P;  1VQP P;  1RO0 A;  1VQ9 P;  1VQ5 P;  2OTJ P;  2ONT A;  1VQN P;  5BS1 A;  1M74 A;  2LF4 A;  3DTJ A;  3OW2 O;  3CCV P;  3G4S P;  3CCU P;  2OTL P;  3G28 A;  4U0D A;  3RG6 C;  1VQO P;  3CC2 P;  4U0A A;  3CPW O;  2PEN A;  4IPY A;  3B5I A;  1N8R Q;  2PEK A;  3G26 A;  4GR2 A;  1YIJ P;  4XFZ A;  3CCQ P;  5HGO A;  3CXC O;  5DCK A;  1K30 A;  3G21 A;  5JPA A;  1YJ9 P;  3G1G A;  2EFJ A;  2Z46 A;  5F2O A;  3MGE A;  2BHV A;  3DS5 A;  3DS1 A;  1QVG O;  1K8A Q;  1KQS O;  3CME P;  3H0D A;  1K73 Q;  1ZMB A;  4XFY A;  1NJI Q;  2E1M A;  3CCJ P;  3G1I A;  1Q82 Q;  5HGN A;  3VRL C;  4U0C A;  1M6E X;  3WBH A;  3DS0 A;  2XT1 A;  3G0V A;  1S72 P;  4U0E A;  2P9X A;  2PEI A;  4U0F A;  4PH0 A;  5I4T G;  3CMA P;  3CCM P;  1YJN P;  1K9M Q;  1VQL P;  3HYB A;  2JYL A;  3CD6 P;  3H47 A;  2PEQ A;  3DPH A;  2OAR A;  2XV6 A;  5HGL A;  2JYG A;  1M6N A;  3E2D A;  4XRQ A;  1VQ7 P;  4PH1 A;  1YHQ P;  2L6E A;  3H4E A;  2M8L A;  1IUQ A;  3LRY A;  1KD1 Q;  4U0B A;  3G71 P;  1Q86 Q;  3HZQ A;  2BUO A;  3I56 P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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