2L6EA

Nmr structure of the monomeric mutant c-terminal domain of hiv-1 capsid in complex with stapled peptide inhibitor
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
94
structure length
94
Chain Sequence
b'SGLVPRGSHMTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Solution structure of a hydrocarbon stapled peptide inhibitor in complex with monomeric C-terminal domain of HIV-1 capsid.
pubmed doi rcsb
molecule keywords Capsid protein p24
source organism Human immunodeficiency virus 1
molecule tags Viral protein/inhibitor
total genus 28
structure length 94
sequence length 94
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2010-11-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2l6eA00
2ONTA 2XT1A 4U0EA 5HGOA 2JYLA 1EOQA 2XXMA 4U0FA 1D1DA 4U0AA 2JYGA 2LF4A 1QRJA 3P05A 3G28A 3MGEA 3G29A 1E6JP 4QNBA 4WYMA 5JPAA 2EIAA 3G1IA 4M0IA 4U0DA 2XV6A 4XFZA 4XRQA 4XFXA 2KODA 3DTJA 3H47A 3NTEA 4PH0A 3DS1A 2JO0A 3H4EA 4IPYA 3G26A 5HGLA 1BAJA 3G0VA 2M8LA 1A8OA 4COCA 5I4TG 2L6EA 3G1GA 4XFYA 2BUOA 4U0BA 2M8PA 3DPHA 5DCKA 3DS3A 3G21A 4XROA 4COPA 4U0CA 3DS0A 1A43A 5HGMA 3LRYA 3VRLC 3DS5A 3DS2A 3DS4A 4PH1A 5HGNA 1EIAA 2M8NA 1AUMA
chains in the Genus database with same CATH superfamily
2KOPA 2VLOA 1RO2A 1EMVA 3CMEP 3I55P 3G6EP 1BAJA 1VQKP 4PWVB 3CC2P 1N8RQ 2KGCA 5F2OA 1QVGO 3CE7A 3VRLC 2XT1A 3B5IA 1Q82Q 4U0AA 1M90Q 1W2BO 2PEQA 3LMOA 2GZGA 1A8OA 2ROQA 1MZ8A 1VKUA 2GDXA 5F2KA 2CGQA 1F80D 3U43A 2M8NA 5HVCA 2JU1A 2K0XA 1M6EX 2EHSA 2XZ0D 2GZIA 2QNWA 5CZDB 4PH0A 2KGDA 4DG9A 5KP8B 5HGLA 1YJ9P 2PY8A 1DNYA 4HKGA 2CNRA 2PEKA 2DGYA 2KOSA 3DS0A 4XROA 2PEOA 4U0EA 4GR2A 1GPJA 1VQMP 1S72P 1YJNP 2KG9A 1BXIA 3CCVP 2VLPA 5HV8A 3G26A 1VQ7P 3DS3A 3G21A 2MF4A 2MD9A 2FHSC 3DS5A 2ONTA 3EJDA 1KLPA 1UJZA 3I56P 1QRJA 1KC8Q 1NQ4A 3G71P 3GKLC 1T8KA 2EFJA 2VLNA 2GZJA 4XRQA 1M1KQ 1VQ9P 1VQOP 1HY8A 1YIJP 4COPA 1Q7YQ 5HGMA 4PH1A 4MRTC 2AFDA 1YI2P 4IZ6A 2KG8A 1Q86Q 2KR5A 3HZQA 3G4SP 4QKOA 2EIAA 3G1IA 4U0DA 1VQLP 2BHVA 1M74A 1KD1Q 1VQNP 2GZEA 2MVUA 3DPHA 2JU2A 2CWOA 1VQ8P 1X3OA 1M6NA 2VLQA 2LPKA 4UHPB 2CQ8A 2N5IA 2LF4A 3G28A 5BS2A 3CXCO 3CPWO 3OW2O 2PEJA 2JO0A 2LOLA 3WBHA 1FR2A 2L6EA 2JQ4A 2BUOA 3CCRP 4U0CA 4F37A 2EHTA 2LIUA 2KW2A 4NEOA 2PENA 3CCQP 2FAEA 1IMPA 2JYGA 2WPTA 3G29A 2OTLP 1L0IA 2L0QA 2KOOA 2OARA 4R0MA 2KGEA 2MY5A 2MR8A 5BS1A 5DCKA 1K30A 1KQSO 5KP6B 1YHQP 3H47A 2OTJP 2GYKA 1EOQA 2N50A 5JPAA 2N6ZA 1VQ5P 1K8AQ 2KG6A 2P9XA 2QEXP 2JAZA 1RNIA 2LL8A 3CCJP 4COCA 5I4TG 2AFEA 1ACPA 3E2DA 1DV5A 2Z46A 2L9FA 2N5HA 2JBGA 1IUQA 2XXMA 2AVAA 3EJBA 3CC4P 3B4QA 1E0HA 5EJDA 1NJIQ 2K93A 4BPFA 3CCUP 2XZ1C 2KORA 1K9MQ 2M8LA 4BPGA 4U0BA 2FVAA 4GR6A 2M8PA 2VSQA 5EW5E 2K0YA 1VQPP 1AYIA 1AF8A 1E6JP 3GZMA 4XFZA 3CCEP 3RG6C 3NTEA 2FADA 3GJNA 2QA4P 5KP7B 2EG5A 4XFYA 2LKIA 2JB0A 1ZMBA 1CEIA 1VHNA 1GXHA 2M5RA 3CCMP 2KWLA 2GDYA 2PEMA 2K94A 1ZNVA 3Q20A 1OR5A 2KODA 3DTJA 2JGPA 2FQ1A 3CMAP 2E1MA 1L0HA 3RG2A 3DS2A 1JJ2O 2FVEA 2JYLA 4PXHB 2AF8A 4H2WC 2NO8A 1YITP 2L4BA 2KGAA 3DS1A 3EJEA 4IPYA 2Z44A 3NY7B 1Z6MA 2K2QA 2N98A 4H2YC 2ERHA 5F2NA 5HGNA 2FACA 1VQ6P 4BPHA 1EIAA 4H2XC 1D1DA 5HGOA 1VQ4P 2KOQA 4WYMA 3P05A 3MGEA 2DNWA 4M0IA 4XFXA 3H4EA 2N6YA 2CG5B 3CCSP 3H0DA 3GZLA 3LRYA 1Q81Q 2MVVA 1RO0A 4U0FA 7CEIA 1K73Q 4QNBA 1UNKA 2K92A 3CC7P 4CA3A 2LTEA 2FQ0A 3G1GA 2FQ2A 1A43A 1QVFO 2FVFA 3DS4A 2LMLA 2L22A 2GDWA 3CD6P 1GXGA 1IMQA 1HQBA 2LIWA 3CCLP 2XV6A 2MR7A 2K0DX 2GZFA 2K5XA 3G0VA 2PEIA 2PNGA 1YJWP 2X2BA 3HYBA 3M1MA 2Z45A 1AUMA
chains in the Genus database with same CATH topology
2ONTA 2JYLA 1RO2A 1EOQA 3I56P 1QRJA 5JPAA 1KC8Q 3CMEP 3G71P 1VQ5P 2EFJA 1K8AQ 3I55P 4XRQA 1YITP 1M1KQ 2P9XA 2QEXP 3DS1A 3G6EP 1VQ9P 1RNIA 3CCJP 4IPYA 1VQOP 1BAJA 2Z44A 4COCA 1YIJP 5I4TG 1VQKP 3CC2P 3E2DA 2Z46A 1N8RQ 4COPA 5F2OA 5HGMA 1Q7YQ 3VRLC 1IUQA 5F2NA 5HGNA 1YHQP 4PH1A 1QVGO 1EIAA 1VQ6P 2XXMA 1D1DA 2XT1A 5HGOA 3CC4P 3B5IA 1YI2P 1VQ4P 1Q82Q 1Q86Q 1NJIQ 4U0AA 3HZQA 4WYMA 3P05A 3MGEA 3G4SP 3CCUP 1M90Q 2EIAA 3G1IA 4M0IA 4U0DA 1VQLP 1W2BO 4XFXA 2PEQA 3H4EA 2BHVA 1M74A 1K9MQ 2M8LA 1A8OA 1KD1Q 1VQNP 3CCSP 4U0BA 4GR6A 2M8PA 3DPHA 3H0DA 2CWOA 5F2KA 1VQ8P 3LRYA 1VQPP 2M8NA 1M6NA 1Q81Q 1RO0A 4U0FA 1K73Q 2LF4A 1M6EX 3G28A 1E6JP 4QNBA 5BS2A 4XFZA 3CCEP 4PH0A 3RG6C 3NTEA 3CXCO 3CPWO 3OW2O 2PEJA 2JO0A 3CC7P 3WBHA 5HGLA 2QA4P 1YJ9P 2PY8A 2L6EA 2EG5A 3G1GA 2PEKA 4XFYA 2BUOA 3CCRP 2DGYA 1ZMBA 4U0CA 3DS0A 1A43A 1QVFO 3DS4A 4XROA 2PEOA 4U0EA 3CCMP 4GR2A 2PENA 3CCQP 1VQMP 3CD6P 2PEMA 1S72P 2JYGA 3G29A 1YJNP 3CCLP 2OTLP 3Q20A 2XV6A 3CCVP 2KODA 3DTJA 2OARA 3G26A 3G0VA 2PEIA 1VQ7P 5BS1A 5DCKA 3DS3A 3G21A 1K30A 2E1MA 3CMAP 1YJWP 1KQSO 3HYBA 3M1MA 3DS5A 3DS2A 3H47A 2OTJP 2Z45A 1AUMA 1JJ2O
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ONT A;  2XT1 A;  4U0E A;  5HGO A;  2JYL A;  1EOQ A;  2XXM A;  4U0F A;  1D1D A;  4U0A A;  2JYG A;  2LF4 A;  1QRJ A;  3P05 A;  3G28 A;  3MGE A;  3G29 A;  1E6J P;  4QNB A;  4WYM A;  5JPA A;  2EIA A;  3G1I A;  4M0I A;  4U0D A;  2XV6 A;  4XFZ A;  4XRQ A;  4XFX A;  2KOD A;  3DTJ A;  3H47 A;  3NTE A;  4PH0 A;  3DS1 A;  2JO0 A;  3H4E A;  4IPY A;  3G26 A;  5HGL A;  1BAJ A;  3G0V A;  2M8L A;  1A8O A;  4COC A;  5I4T G;  2L6E A;  3G1G A;  4XFY A;  2BUO A;  4U0B A;  2M8P A;  3DPH A;  5DCK A;  3DS3 A;  3G21 A;  4XRO A;  4COP A;  4U0C A;  3DS0 A;  1A43 A;  5HGM A;  3LRY A;  3VRL C;  3DS5 A;  3DS2 A;  3DS4 A;  4PH1 A;  5HGN A;  1EIA A;  2M8N A;  1AUM A; 
#chains in the Genus database with same CATH topology
 2KOP A;  2VLO A;  1RO2 A;  1EMV A;  3CME P;  3I55 P;  3G6E P;  1BAJ A;  1VQK P;  4PWV B;  3CC2 P;  1N8R Q;  2KGC A;  5F2O A;  1QVG O;  3CE7 A;  3VRL C;  2XT1 A;  3B5I A;  1Q82 Q;  4U0A A;  1M90 Q;  1W2B O;  2PEQ A;  3LMO A;  2GZG A;  1A8O A;  2ROQ A;  1MZ8 A;  1VKU A;  2GDX A;  5F2K A;  2CGQ A;  1F80 D;  3U43 A;  2M8N A;  5HVC A;  2JU1 A;  2K0X A;  1M6E X;  2EHS A;  2XZ0 D;  2GZI A;  2QNW A;  5CZD B;  4PH0 A;  2KGD A;  4DG9 A;  5KP8 B;  5HGL A;  1YJ9 P;  2PY8 A;  1DNY A;  4HKG A;  2CNR A;  2PEK A;  2DGY A;  2KOS A;  3DS0 A;  4XRO A;  2PEO A;  4U0E A;  4GR2 A;  1GPJ A;  1VQM P;  1S72 P;  1YJN P;  2KG9 A;  1BXI A;  3CCV P;  2VLP A;  5HV8 A;  3G26 A;  1VQ7 P;  3DS3 A;  3G21 A;  2MF4 A;  2MD9 A;  2FHS C;  3DS5 A;  2ONT A;  3EJD A;  1KLP A;  1UJZ A;  3I56 P;  1QRJ A;  1KC8 Q;  1NQ4 A;  3G71 P;  3GKL C;  1T8K A;  2EFJ A;  2VLN A;  2GZJ A;  4XRQ A;  1M1K Q;  1VQ9 P;  1VQO P;  1HY8 A;  1YIJ P;  4COP A;  1Q7Y Q;  5HGM A;  4PH1 A;  4MRT C;  2AFD A;  1YI2 P;  4IZ6 A;  2KG8 A;  1Q86 Q;  2KR5 A;  3HZQ A;  3G4S P;  4QKO A;  2EIA A;  3G1I A;  4U0D A;  1VQL P;  2BHV A;  1M74 A;  1KD1 Q;  1VQN P;  2GZE A;  2MVU A;  3DPH A;  2JU2 A;  2CWO A;  1VQ8 P;  1X3O A;  1M6N A;  2VLQ A;  2LPK A;  4UHP B;  2CQ8 A;  2N5I A;  2LF4 A;  3G28 A;  5BS2 A;  3CXC O;  3CPW O;  3OW2 O;  2PEJ A;  2JO0 A;  2LOL A;  3WBH A;  1FR2 A;  2L6E A;  2JQ4 A;  2BUO A;  3CCR P;  4U0C A;  4F37 A;  2EHT A;  2LIU A;  2KW2 A;  4NEO A;  2PEN A;  3CCQ P;  2FAE A;  1IMP A;  2JYG A;  2WPT A;  3G29 A;  2OTL P;  1L0I A;  2L0Q A;  2KOO A;  2OAR A;  4R0M A;  2KGE A;  2MY5 A;  2MR8 A;  5BS1 A;  5DCK A;  1K30 A;  1KQS O;  5KP6 B;  1YHQ P;  3H47 A;  2OTJ P;  2GYK A;  1EOQ A;  2N50 A;  5JPA A;  2N6Z A;  1VQ5 P;  1K8A Q;  2KG6 A;  2P9X A;  2QEX P;  2JAZ A;  1RNI A;  2LL8 A;  3CCJ P;  4COC A;  5I4T G;  2AFE A;  1ACP A;  3E2D A;  1DV5 A;  2Z46 A;  2L9F A;  2N5H A;  2JBG A;  1IUQ A;  2XXM A;  2AVA A;  3EJB A;  3CC4 P;  3B4Q A;  1E0H A;  5EJD A;  1NJI Q;  2K93 A;  4BPF A;  3CCU P;  2XZ1 C;  2KOR A;  1K9M Q;  2M8L A;  4BPG A;  4U0B A;  2FVA A;  4GR6 A;  2M8P A;  2VSQ A;  5EW5 E;  2K0Y A;  1VQP P;  1AYI A;  1AF8 A;  1E6J P;  3GZM A;  4XFZ A;  3CCE P;  3RG6 C;  3NTE A;  2FAD A;  3GJN A;  2QA4 P;  5KP7 B;  2EG5 A;  4XFY A;  2LKI A;  2JB0 A;  1ZMB A;  1CEI A;  1VHN A;  1GXH A;  2M5R A;  3CCM P;  2KWL A;  2GDY A;  2PEM A;  2K94 A;  1ZNV A;  3Q20 A;  1OR5 A;  2KOD A;  3DTJ A;  2JGP A;  2FQ1 A;  3CMA P;  2E1M A;  1L0H A;  3RG2 A;  3DS2 A;  1JJ2 O;  2FVE A;  2JYL A;  4PXH B;  2AF8 A;  4H2W C;  2NO8 A;  1YIT P;  2L4B A;  2KGA A;  3DS1 A;  3EJE A;  4IPY A;  2Z44 A;  3NY7 B;  1Z6M A;  2K2Q A;  2N98 A;  4H2Y C;  2ERH A;  5F2N A;  5HGN A;  2FAC A;  1VQ6 P;  4BPH A;  1EIA A;  4H2X C;  1D1D A;  5HGO A;  1VQ4 P;  2KOQ A;  4WYM A;  3P05 A;  3MGE A;  2DNW A;  4M0I A;  4XFX A;  3H4E A;  2N6Y A;  2CG5 B;  3CCS P;  3H0D A;  3GZL A;  3LRY A;  1Q81 Q;  2MVV A;  1RO0 A;  4U0F A;  7CEI A;  1K73 Q;  4QNB A;  1UNK A;  2K92 A;  3CC7 P;  4CA3 A;  2LTE A;  2FQ0 A;  3G1G A;  2FQ2 A;  1A43 A;  1QVF O;  2FVF A;  3DS4 A;  2LML A;  2L22 A;  2GDW A;  3CD6 P;  1GXG A;  1IMQ A;  1HQB A;  2LIW A;  3CCL P;  2XV6 A;  2MR7 A;  2K0D X;  2GZF A;  2K5X A;  3G0V A;  2PEI A;  2PNG A;  1YJW P;  2X2B A;  3HYB A;  3M1M A;  2Z45 A;  1AUM A; 
#chains in the Genus database with same CATH homology
 2ONT A;  2JYL A;  1RO2 A;  1EOQ A;  3I56 P;  1QRJ A;  5JPA A;  1KC8 Q;  3CME P;  3G71 P;  1VQ5 P;  2EFJ A;  1K8A Q;  3I55 P;  4XRQ A;  1YIT P;  1M1K Q;  2P9X A;  2QEX P;  3DS1 A;  3G6E P;  1VQ9 P;  1RNI A;  3CCJ P;  4IPY A;  1VQO P;  1BAJ A;  2Z44 A;  4COC A;  1YIJ P;  5I4T G;  1VQK P;  3CC2 P;  3E2D A;  2Z46 A;  1N8R Q;  4COP A;  5F2O A;  5HGM A;  1Q7Y Q;  3VRL C;  1IUQ A;  5F2N A;  5HGN A;  1YHQ P;  4PH1 A;  1QVG O;  1EIA A;  1VQ6 P;  2XXM A;  1D1D A;  2XT1 A;  5HGO A;  3CC4 P;  3B5I A;  1YI2 P;  1VQ4 P;  1Q82 Q;  1Q86 Q;  1NJI Q;  4U0A A;  3HZQ A;  4WYM A;  3P05 A;  3MGE A;  3G4S P;  3CCU P;  1M90 Q;  2EIA A;  3G1I A;  4M0I A;  4U0D A;  1VQL P;  1W2B O;  4XFX A;  2PEQ A;  3H4E A;  2BHV A;  1M74 A;  1K9M Q;  2M8L A;  1A8O A;  1KD1 Q;  1VQN P;  3CCS P;  4U0B A;  4GR6 A;  2M8P A;  3DPH A;  3H0D A;  2CWO A;  5F2K A;  1VQ8 P;  3LRY A;  1VQP P;  2M8N A;  1M6N A;  1Q81 Q;  1RO0 A;  4U0F A;  1K73 Q;  2LF4 A;  1M6E X;  3G28 A;  1E6J P;  4QNB A;  5BS2 A;  4XFZ A;  3CCE P;  4PH0 A;  3RG6 C;  3NTE A;  3CXC O;  3CPW O;  3OW2 O;  2PEJ A;  2JO0 A;  3CC7 P;  3WBH A;  5HGL A;  2QA4 P;  1YJ9 P;  2PY8 A;  2L6E A;  2EG5 A;  3G1G A;  2PEK A;  4XFY A;  2BUO A;  3CCR P;  2DGY A;  1ZMB A;  4U0C A;  3DS0 A;  1A43 A;  1QVF O;  3DS4 A;  4XRO A;  2PEO A;  4U0E A;  3CCM P;  4GR2 A;  2PEN A;  3CCQ P;  1VQM P;  3CD6 P;  2PEM A;  1S72 P;  2JYG A;  3G29 A;  1YJN P;  3CCL P;  2OTL P;  3Q20 A;  2XV6 A;  3CCV P;  2KOD A;  3DTJ A;  2OAR A;  3G26 A;  3G0V A;  2PEI A;  1VQ7 P;  5BS1 A;  5DCK A;  3DS3 A;  3G21 A;  1K30 A;  2E1M A;  3CMA P;  1YJW P;  1KQS O;  3HYB A;  3M1M A;  3DS5 A;  3DS2 A;  3H47 A;  2OTJ P;  2Z45 A;  1AUM A;  1JJ2 O; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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