4QKOA

The crystal structure of the pyocin s2 nuclease domain, immunity protein complex at 1.8 angstroms
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
87
structure length
87
Chain Sequence
MKSKISEYTEKEFLEFVKDIYTNNKKKFPTEESHIQAVLEFKKLTEHPSGSDLLYYPNENREDSPAGVVKEVKEWRASKGLPGFKAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Pyocin-S2 immunity protein
publication title Structural Insights into pyocin S2
rcsb
source organism Pseudomonas aeruginosa
molecule tags Antimicrobial protein
total genus 30
structure length 87
sequence length 87
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2014-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 4qkoA00
1ZNVA 2K0DX 1AYIA 1FR2A 1UNKA 3GJNA 2GZIA 1BXIA 2WPTA 4UHPB 2GZEA 2GZFA 2JB0A 4F37A 2VLNA 1MZ8A 1E0HA 5EW5E 2VLQA 2K5XA 2GYKA 3U43A 1IMPA 2GZGA 3GKLC 2ERHA 1EMVA 2JAZA 2VLOA 7CEIA 1GXGA 1GXHA 4QKOA 1CEIA 2JBGA 2VLPA 1UJZA 1IMQA 2NO8A 2GZJA
chains in the Genus database with same CATH superfamily
1RO2A 3HYBA 2QA4P 1EOQA 2QNWA 5CZDB 1M1KQ 2GZIA 1K9MQ 2JB0A 1YJWP 4PH1A 3CCRP 1HY8A 3CCEP 2JGPA 4GR6A 3G21A 7CEIA 2DNWA 1ACPA 4HKGA 3G1IA 3DS0A 3VRLC 5KP6B 3GJNA 1KD1Q 2BHVA 4COCA 2VLQA 3CMEP 2GYKA 1IMPA 3NY7B 1Q82Q 2JAZA 3EJEA 4WYMA 5KP7B 1IUQA 2ROQA 1YJ9P 4U0AA 1D1DA 3H47A 4IZ6A 5F2KA 2MF4A 2L6EA 1X3OA 4PXHB 2MY5A 2LKIA 2PNGA 1S72P 3GZLA 2K5XA 4H2YC 2L9FA 2PY8A 1Z6MA 4BPHA 2ERHA 1GPJA 3CCQP 1GXHA 2CGQA 1L0IA 5DCKA 2FVAA 4XFZA 2KG9A 3DS2A 2WPTA 5I4TG 1QVFO 3P05A 2JQ4A 1RNIA 2DGYA 3HZQA 1VQKP 2KR5A 4XRQA 1YITP 3M1MA 3G1GA 2EIAA 2GZGA 5KP8B 2LOLA 2GDWA 1YHQP 2CWOA 1NJIQ 3CCSP 2VLNA 1A43A 2PEQA 2N5IA 2CG5B 3MGEA 2M8LA 1VQ4P 3CXCO 3Q20A 3NTEA 2K0XA 3RG6C 1Q86Q 3EJDA 3DS4A 1VQ6P 3U43A 5HVCA 2FHSC 1AF8A 3CCUP 1ZMBA 3G6EP 2AFDA 1ZNVA 1AYIA 2KGAA 1RO0A 2KGDA 3H0DA 5HGLA 2FAEA 3I56P 2QEXP 2PEMA 2CNRA 2OARA 2GDYA 1AUMA 3OW2O 3CC4P 3G71P 4QKOA 4BPGA 3B4QA 3LRYA 1VQPP 2GZJA 2KWLA 1Q7YQ 2M8NA 1UNKA 2LF4A 1DV5A 2LMLA 2N6YA 3CE7A 2KGEA 2JO0A 3CC7P 2KOPA 1KC8Q 2L4BA 1K73Q 3GKLC 2FQ1A 2FACA 1GXGA 3DS1A 1CEIA 1VKUA 2VLPA 3CD6P 2FVFA 3WBHA 4QNBA 3CCLP 1A8OA 2MVUA 2E1MA 5F2NA 4UHPB 1W2BO 2PENA 2LTEA 2N98A 1KQSO 4PH0A 3CCMP 4GR2A 4U0CA 1JJ2O 1VQNP 2KOSA 2KG6A 4XFYA 5HV8A 1VHNA 4COPA 2N5HA 3EJBA 1VQ8P 1M6EX 3E2DA 2KOOA 1VQ5P 1DNYA 2N50A 2JYGA 1M90Q 1VQOP 4MRTC 2OTLP 2XV6A 2CQ8A 2JBGA 2LIWA 4CA3A 2K93A 2NO8A 1HQBA 2L0QA 2Z44A 2KORA 2MVVA 4U0EA 2N6ZA 1VQ7P 4PWVB 2M5RA 1L0HA 5F2OA 2JU1A 2XT1A 1VQLP 1M74A 2AF8A 2EG5A 3GZMA 2XZ0D 1E6JP 2FQ2A 2XXMA 3B5IA 3I55P 1VQMP 1M6NA 2KODA 3G26A 2FQ0A 4U0FA 4F37A 2EHTA 1YJNP 2AVAA 2LPKA 2MD9A 2PEIA 4H2XC 3LMOA 2LIUA 2VSQA 1BAJA 2JYLA 1N8RQ 2L22A 3H4EA 5HGOA 3DPHA 4XROA 2P9XA 4XFXA 1FR2A 2PEOA 1YI2P 1VQ9P 2GZEA 3G28A 2K94A 1YIJP 2MR8A 2KGCA 4H2WC 1QRJA 2Z46A 2ONTA 2K0YA 4DG9A 3CC2P 2Z45A 3G29A 1UJZA 2K0DX 4R0MA 3RG2A 2AFEA 1T8KA 3G4SP 1BXIA 5BS2A 1KLPA 2K2QA 3CPWO 1E0HA 5EW5E 4U0DA 3DS3A 5JPAA 2FADA 1EMVA 3G0VA 2KW2A 2OTJP 1Q81Q 1OR5A 2KG8A 5EJDA 2KOQA 2BUOA 3CMAP 2EFJA 2K92A 3DS5A 5HGNA 2GZFA 2EHSA 2X2BA 4NEOA 1MZ8A 1F80D 4IPYA 3DTJA 1K30A 2JU2A 2LL8A 1NQ4A 2GDXA 2VLOA 3CCVP 2M8PA 1EIAA 2PEJA 1IMQA 2PEKA 2XZ1C 3CCJP 4U0BA 2MR7A 4BPFA 1K8AQ 5HGMA 4M0IA 1QVGO 2FVEA 5BS1A
chains in the Genus database with same CATH topology
1ZNVA 2K0DX 1AYIA 1FR2A 1UNKA 3GJNA 2GZIA 1BXIA 2WPTA 4UHPB 2GZEA 2GZFA 2JB0A 4F37A 2VLNA 1MZ8A 1E0HA 5EW5E 2VLQA 2K5XA 2GYKA 3U43A 1IMPA 2GZGA 3GKLC 2ERHA 1EMVA 2JAZA 2VLOA 7CEIA 1GXGA 1GXHA 4QKOA 1CEIA 2JBGA 2VLPA 1UJZA 1IMQA 2NO8A 2GZJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZNV A;  2K0D X;  1AYI A;  1FR2 A;  1UNK A;  3GJN A;  2GZI A;  1BXI A;  2WPT A;  4UHP B;  2GZE A;  2GZF A;  2JB0 A;  4F37 A;  2VLN A;  1MZ8 A;  1E0H A;  5EW5 E;  2VLQ A;  2K5X A;  2GYK A;  3U43 A;  1IMP A;  2GZG A;  3GKL C;  2ERH A;  1EMV A;  2JAZ A;  2VLO A;  7CEI A;  1GXG A;  1GXH A;  4QKO A;  1CEI A;  2JBG A;  2VLP A;  1UJZ A;  1IMQ A;  2NO8 A;  2GZJ A; 
#chains in the Genus database with same CATH topology
 1RO2 A;  3HYB A;  2QA4 P;  1EOQ A;  2QNW A;  5CZD B;  1M1K Q;  2GZI A;  1K9M Q;  2JB0 A;  1YJW P;  4PH1 A;  3CCR P;  1HY8 A;  3CCE P;  2JGP A;  4GR6 A;  3G21 A;  7CEI A;  2DNW A;  1ACP A;  4HKG A;  3G1I A;  3DS0 A;  3VRL C;  5KP6 B;  3GJN A;  1KD1 Q;  2BHV A;  4COC A;  2VLQ A;  3CME P;  2GYK A;  1IMP A;  3NY7 B;  1Q82 Q;  2JAZ A;  3EJE A;  4WYM A;  5KP7 B;  1IUQ A;  2ROQ A;  1YJ9 P;  4U0A A;  1D1D A;  3H47 A;  4IZ6 A;  5F2K A;  2MF4 A;  2L6E A;  1X3O A;  4PXH B;  2MY5 A;  2LKI A;  2PNG A;  1S72 P;  3GZL A;  2K5X A;  4H2Y C;  2L9F A;  2PY8 A;  1Z6M A;  4BPH A;  2ERH A;  1GPJ A;  3CCQ P;  1GXH A;  2CGQ A;  1L0I A;  5DCK A;  2FVA A;  4XFZ A;  2KG9 A;  3DS2 A;  2WPT A;  5I4T G;  1QVF O;  3P05 A;  2JQ4 A;  1RNI A;  2DGY A;  3HZQ A;  1VQK P;  2KR5 A;  4XRQ A;  1YIT P;  3M1M A;  3G1G A;  2EIA A;  2GZG A;  5KP8 B;  2LOL A;  2GDW A;  1YHQ P;  2CWO A;  1NJI Q;  3CCS P;  2VLN A;  1A43 A;  2PEQ A;  2N5I A;  2CG5 B;  3MGE A;  2M8L A;  1VQ4 P;  3CXC O;  3Q20 A;  3NTE A;  2K0X A;  3RG6 C;  1Q86 Q;  3EJD A;  3DS4 A;  1VQ6 P;  3U43 A;  5HVC A;  2FHS C;  1AF8 A;  3CCU P;  1ZMB A;  3G6E P;  2AFD A;  1ZNV A;  1AYI A;  2KGA A;  1RO0 A;  2KGD A;  3H0D A;  5HGL A;  2FAE A;  3I56 P;  2QEX P;  2PEM A;  2CNR A;  2OAR A;  2GDY A;  1AUM A;  3OW2 O;  3CC4 P;  3G71 P;  4QKO A;  4BPG A;  3B4Q A;  3LRY A;  1VQP P;  2GZJ A;  2KWL A;  1Q7Y Q;  2M8N A;  1UNK A;  2LF4 A;  1DV5 A;  2LML A;  2N6Y A;  3CE7 A;  2KGE A;  2JO0 A;  3CC7 P;  2KOP A;  1KC8 Q;  2L4B A;  1K73 Q;  3GKL C;  2FQ1 A;  2FAC A;  1GXG A;  3DS1 A;  1CEI A;  1VKU A;  2VLP A;  3CD6 P;  2FVF A;  3WBH A;  4QNB A;  3CCL P;  1A8O A;  2MVU A;  2E1M A;  5F2N A;  4UHP B;  1W2B O;  2PEN A;  2LTE A;  2N98 A;  1KQS O;  4PH0 A;  3CCM P;  4GR2 A;  4U0C A;  1JJ2 O;  1VQN P;  2KOS A;  2KG6 A;  4XFY A;  5HV8 A;  1VHN A;  4COP A;  2N5H A;  3EJB A;  1VQ8 P;  1M6E X;  3E2D A;  2KOO A;  1VQ5 P;  1DNY A;  2N50 A;  2JYG A;  1M90 Q;  1VQO P;  4MRT C;  2OTL P;  2XV6 A;  2CQ8 A;  2JBG A;  2LIW A;  4CA3 A;  2K93 A;  2NO8 A;  1HQB A;  2L0Q A;  2Z44 A;  2KOR A;  2MVV A;  4U0E A;  2N6Z A;  1VQ7 P;  4PWV B;  2M5R A;  1L0H A;  5F2O A;  2JU1 A;  2XT1 A;  1VQL P;  1M74 A;  2AF8 A;  2EG5 A;  3GZM A;  2XZ0 D;  1E6J P;  2FQ2 A;  2XXM A;  3B5I A;  3I55 P;  1VQM P;  1M6N A;  2KOD A;  3G26 A;  2FQ0 A;  4U0F A;  4F37 A;  2EHT A;  1YJN P;  2AVA A;  2LPK A;  2MD9 A;  2PEI A;  4H2X C;  3LMO A;  2LIU A;  2VSQ A;  1BAJ A;  2JYL A;  1N8R Q;  2L22 A;  3H4E A;  5HGO A;  3DPH A;  4XRO A;  2P9X A;  4XFX A;  1FR2 A;  2PEO A;  1YI2 P;  1VQ9 P;  2GZE A;  3G28 A;  2K94 A;  1YIJ P;  2MR8 A;  2KGC A;  4H2W C;  1QRJ A;  2Z46 A;  2ONT A;  2K0Y A;  4DG9 A;  3CC2 P;  2Z45 A;  3G29 A;  1UJZ A;  2K0D X;  4R0M A;  3RG2 A;  2AFE A;  1T8K A;  3G4S P;  1BXI A;  5BS2 A;  1KLP A;  2K2Q A;  3CPW O;  1E0H A;  5EW5 E;  4U0D A;  3DS3 A;  5JPA A;  2FAD A;  1EMV A;  3G0V A;  2KW2 A;  2OTJ P;  1Q81 Q;  1OR5 A;  2KG8 A;  5EJD A;  2KOQ A;  2BUO A;  3CMA P;  2EFJ A;  2K92 A;  3DS5 A;  5HGN A;  2GZF A;  2EHS A;  2X2B A;  4NEO A;  1MZ8 A;  1F80 D;  4IPY A;  3DTJ A;  1K30 A;  2JU2 A;  2LL8 A;  1NQ4 A;  2GDX A;  2VLO A;  3CCV P;  2M8P A;  1EIA A;  2PEJ A;  1IMQ A;  2PEK A;  2XZ1 C;  3CCJ P;  4U0B A;  2MR7 A;  4BPF A;  1K8A Q;  5HGM A;  4M0I A;  1QVG O;  2FVE A;  5BS1 A; 
#chains in the Genus database with same CATH homology
 1ZNV A;  2K0D X;  1AYI A;  1FR2 A;  1UNK A;  3GJN A;  2GZI A;  1BXI A;  2WPT A;  4UHP B;  2GZE A;  2GZF A;  2JB0 A;  4F37 A;  2VLN A;  1MZ8 A;  1E0H A;  5EW5 E;  2VLQ A;  2K5X A;  2GYK A;  3U43 A;  1IMP A;  2GZG A;  3GKL C;  2ERH A;  1EMV A;  2JAZ A;  2VLO A;  7CEI A;  1GXG A;  1GXH A;  4QKO A;  1CEI A;  2JBG A;  2VLP A;  1UJZ A;  1IMQ A;  2NO8 A;  2GZJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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