4QKOA

The crystal structure of the pyocin s2 nuclease domain, immunity protein complex at 1.8 angstroms
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
87
structure length
87
Chain Sequence
MKSKISEYTEKEFLEFVKDIYTNNKKKFPTEESHIQAVLEFKKLTEHPSGSDLLYYPNENREDSPAGVVKEVKEWRASKGLPGFKAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antimicrobial protein
source organism Pseudomonas aeruginosa
publication title Structural Insights into pyocin S2
rcsb
molecule keywords Pyocin-S2 immunity protein
total genus 30
structure length 87
sequence length 87
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2014-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 4qkoA00
3U43A 7CEIA 2NO8A 1GXHA 1ZNVA 2ERHA 2GYKA 2K0DX 1FR2A 2VLNA 1AYIA 3GKLC 4QKOA 2GZEA 1GXGA 1CEIA 1UNKA 2JBGA 5EW5E 1E0HA 1UJZA 1IMPA 2GZJA 2JAZA 2VLQA 2GZFA 1IMQA 2VLOA 2WPTA 1EMVA 4F37A 1BXIA 2GZGA 2VLPA 4UHPB 1MZ8A 2JB0A 2K5XA 3GJNA 2GZIA
chains in the Genus database with same CATH superfamily
1VQ9P 1ZNVA 1A43A 4CA3A 2OTJP 2KGCA 1N8RQ 2KGEA 5HVCA 2N6YA 2JQ4A 2PEIA 1IMQA 2PEKA 2VLOA 3CC2P 3CE7A 3H47A 3U43A 2KG8A 2BUOA 1VKUA 3G1IA 2EHTA 1ZMBA 4GR2A 3DS3A 1Q82Q 2L0QA 2K0YA 4U0AA 5HGNA 2FHSC 3DS1A 2FAEA 1DV5A 3P05A 5DCKA 2Z45A 1QVGO 3G1GA 1M74A 4XFYA 1HY8A 1IMPA 4XFZA 4HKGA 2MR8A 1T8KA 2ROQA 4MRTC 1VHNA 1S72P 2AF8A 2FACA 2N5IA 2NO8A 2CGQA 4PH0A 2GZEA 2M5RA 3G6EP 1E6JP 1RNIA 3LRYA 2PEMA 1GPJA 2JU2A 2JBGA 5HGMA 3RG6C 3G21A 3CCEP 1Q7YQ 3VRLC 1Z6MA 2LIUA 4COPA 2MD9A 3DS2A 1MZ8A 2Z46A 5CZDB 2L4BA 2M8PA 5F2NA 1ACPA 2DGYA 1QRJA 2EIAA 3GZLA 2L9FA 2GDXA 1EIAA 2JGPA 2GZJA 2XT1A 2KORA 2WPTA 2N5HA 1YI2P 2JB0A 3GJNA 2LTEA 2VLQA 2LIWA 1AUMA 1BAJA 4WYMA 2GYKA 4H2YC 3CC7P 2KG6A 2K2QA 1D1DA 1M6EX 5BS2A 1VQ4P 1M90Q 1M6NA 4PH1A 2FQ0A 5BS1A 4XRQA 3G28A 1W2BO 3CCLP 3RG2A 1IUQA 4IZ6A 1EOQA 7CEIA 3CMEP 4H2XC 2ERHA 4XFXA 3G4SP 3CCQP 1A8OA 1HQBA 5JPAA 1E0HA 3CPWO 1AF8A 3MGEA 2LL8A 2PEQA 3H4EA 2N50A 2XV6A 1F80D 1YIJP 2EG5A 3DPHA 3WBHA 2CG5B 2N6ZA 2LKIA 2MVVA 1YITP 3G71P 4IPYA 3EJBA 2L6EA 2KOQA 2VSQA 3CCSP 2K93A 1VQMP 1VQLP 2VLPA 2GZGA 4UHPB 4GR6A 2Z44A 2MR7A 3G0VA 2L22A 3I56P 2X2BA 3EJDA 5HGLA 3I55P 4M0IA 4QKOA 4PXHB 1KQSO 1KLPA 4U0CA 4XROA 1VQ6P 2MF4A 2E1MA 3NTEA 4U0DA 2FVEA 2JYGA 2PNGA 2DNWA 2KWLA 3M1MA 3NY7B 1L0HA 4PWVB 2KOOA 4QNBA 2AFEA 1YJNP 3B4QA 1UNKA 3CC4P 4NEOA 1VQOP 1NQ4A 2M8LA 1YHQP 4BPGA 4U0EA 3G29A 2GZIA 2FQ1A 1K8AQ 5F2KA 1RO2A 3HZQA 1NJIQ 1VQ7P 4DG9A 2AFDA 2CWOA 3CCMP 2M8NA 2MVUA 2K94A 2FVFA 4U0FA 3Q20A 3GZMA 3DS5A 1GXHA 1QVFO 2KODA 2QA4P 2QNWA 3GKLC 1K73Q 3E2DA 3CCJP 1KC8Q 1M1KQ 3H0DA 5HV8A 2KGDA 2XXMA 3LMOA 1EMVA 2LOLA 2BHVA 2PY8A 2P9XA 2LMLA 3CCRP 3CCVP 1YJ9P 1FR2A 2VLNA 1VQ8P 2QEXP 2FVAA 3OW2O 5KP6B 2JU1A 2FQ2A 2N98A 4BPFA 2ONTA 5EJDA 1VQNP 1K9MQ 1BXIA 2K5XA 2KG9A 2K92A 2AVAA 3DS4A 2JO0A 2PEJA 1AYIA 1K30A 2KR5A 3CXCO 1RO0A 2EHSA 2LPKA 2OTLP 2XZ0D 3DTJA 2EFJA 2GDYA 2PENA 1VQPP 1L0IA 4F37A 3B5IA 2JAZA 1Q86Q 2OARA 5I4TG 2GDWA 2K0DX 2LF4A 3CCUP 1YJWP 1GXGA 4BPHA 1X3OA 1UJZA 2KGAA 2CNRA 2KW2A 4U0BA 2JYLA 1VQKP 1DNYA 2GZFA 2KOPA 5KP8B 3G26A 3HYBA 3CD6P 5KP7B 1VQ5P 4COCA 2CQ8A 4H2WC 1CEIA 2XZ1C 5EW5E 3EJEA 2PEOA 2KOSA 1KD1Q 1JJ2O 2K0XA 5HGOA 1Q81Q 4R0MA 5F2OA 3DS0A 3CMAP 1OR5A 2FADA 2MY5A
chains in the Genus database with same CATH topology
3U43A 7CEIA 2NO8A 1GXHA 1ZNVA 2ERHA 2GYKA 2K0DX 1FR2A 2VLNA 1AYIA 3GKLC 4QKOA 2GZEA 1GXGA 1CEIA 1UNKA 2JBGA 5EW5E 1E0HA 1UJZA 1IMPA 2GZJA 2JAZA 2VLQA 2GZFA 1IMQA 2VLOA 2WPTA 1EMVA 4F37A 1BXIA 2GZGA 2VLPA 4UHPB 1MZ8A 2JB0A 2K5XA 3GJNA 2GZIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U43 A;  7CEI A;  2NO8 A;  1GXH A;  1ZNV A;  2ERH A;  2GYK A;  2K0D X;  1FR2 A;  2VLN A;  1AYI A;  3GKL C;  4QKO A;  2GZE A;  1GXG A;  1CEI A;  1UNK A;  2JBG A;  5EW5 E;  1E0H A;  1UJZ A;  1IMP A;  2GZJ A;  2JAZ A;  2VLQ A;  2GZF A;  1IMQ A;  2VLO A;  2WPT A;  1EMV A;  4F37 A;  1BXI A;  2GZG A;  2VLP A;  4UHP B;  1MZ8 A;  2JB0 A;  2K5X A;  3GJN A;  2GZI A; 
#chains in the Genus database with same CATH topology
 1VQ9 P;  1ZNV A;  1A43 A;  4CA3 A;  2OTJ P;  2KGC A;  1N8R Q;  2KGE A;  5HVC A;  2N6Y A;  2JQ4 A;  2PEI A;  1IMQ A;  2PEK A;  2VLO A;  3CC2 P;  3CE7 A;  3H47 A;  3U43 A;  2KG8 A;  2BUO A;  1VKU A;  3G1I A;  2EHT A;  1ZMB A;  4GR2 A;  3DS3 A;  1Q82 Q;  2L0Q A;  2K0Y A;  4U0A A;  5HGN A;  2FHS C;  3DS1 A;  2FAE A;  1DV5 A;  3P05 A;  5DCK A;  2Z45 A;  1QVG O;  3G1G A;  1M74 A;  4XFY A;  1HY8 A;  1IMP A;  4XFZ A;  4HKG A;  2MR8 A;  1T8K A;  2ROQ A;  4MRT C;  1VHN A;  1S72 P;  2AF8 A;  2FAC A;  2N5I A;  2NO8 A;  2CGQ A;  4PH0 A;  2GZE A;  2M5R A;  3G6E P;  1E6J P;  1RNI A;  3LRY A;  2PEM A;  1GPJ A;  2JU2 A;  2JBG A;  5HGM A;  3RG6 C;  3G21 A;  3CCE P;  1Q7Y Q;  3VRL C;  1Z6M A;  2LIU A;  4COP A;  2MD9 A;  3DS2 A;  1MZ8 A;  2Z46 A;  5CZD B;  2L4B A;  2M8P A;  5F2N A;  1ACP A;  2DGY A;  1QRJ A;  2EIA A;  3GZL A;  2L9F A;  2GDX A;  1EIA A;  2JGP A;  2GZJ A;  2XT1 A;  2KOR A;  2WPT A;  2N5H A;  1YI2 P;  2JB0 A;  3GJN A;  2LTE A;  2VLQ A;  2LIW A;  1AUM A;  1BAJ A;  4WYM A;  2GYK A;  4H2Y C;  3CC7 P;  2KG6 A;  2K2Q A;  1D1D A;  1M6E X;  5BS2 A;  1VQ4 P;  1M90 Q;  1M6N A;  4PH1 A;  2FQ0 A;  5BS1 A;  4XRQ A;  3G28 A;  1W2B O;  3CCL P;  3RG2 A;  1IUQ A;  4IZ6 A;  1EOQ A;  7CEI A;  3CME P;  4H2X C;  2ERH A;  4XFX A;  3G4S P;  3CCQ P;  1A8O A;  1HQB A;  5JPA A;  1E0H A;  3CPW O;  1AF8 A;  3MGE A;  2LL8 A;  2PEQ A;  3H4E A;  2N50 A;  2XV6 A;  1F80 D;  1YIJ P;  2EG5 A;  3DPH A;  3WBH A;  2CG5 B;  2N6Z A;  2LKI A;  2MVV A;  1YIT P;  3G71 P;  4IPY A;  3EJB A;  2L6E A;  2KOQ A;  2VSQ A;  3CCS P;  2K93 A;  1VQM P;  1VQL P;  2VLP A;  2GZG A;  4UHP B;  4GR6 A;  2Z44 A;  2MR7 A;  3G0V A;  2L22 A;  3I56 P;  2X2B A;  3EJD A;  5HGL A;  3I55 P;  4M0I A;  4QKO A;  4PXH B;  1KQS O;  1KLP A;  4U0C A;  4XRO A;  1VQ6 P;  2MF4 A;  2E1M A;  3NTE A;  4U0D A;  2FVE A;  2JYG A;  2PNG A;  2DNW A;  2KWL A;  3M1M A;  3NY7 B;  1L0H A;  4PWV B;  2KOO A;  4QNB A;  2AFE A;  1YJN P;  3B4Q A;  1UNK A;  3CC4 P;  4NEO A;  1VQO P;  1NQ4 A;  2M8L A;  1YHQ P;  4BPG A;  4U0E A;  3G29 A;  2GZI A;  2FQ1 A;  1K8A Q;  5F2K A;  1RO2 A;  3HZQ A;  1NJI Q;  1VQ7 P;  4DG9 A;  2AFD A;  2CWO A;  3CCM P;  2M8N A;  2MVU A;  2K94 A;  2FVF A;  4U0F A;  3Q20 A;  3GZM A;  3DS5 A;  1GXH A;  1QVF O;  2KOD A;  2QA4 P;  2QNW A;  3GKL C;  1K73 Q;  3E2D A;  3CCJ P;  1KC8 Q;  1M1K Q;  3H0D A;  5HV8 A;  2KGD A;  2XXM A;  3LMO A;  1EMV A;  2LOL A;  2BHV A;  2PY8 A;  2P9X A;  2LML A;  3CCR P;  3CCV P;  1YJ9 P;  1FR2 A;  2VLN A;  1VQ8 P;  2QEX P;  2FVA A;  3OW2 O;  5KP6 B;  2JU1 A;  2FQ2 A;  2N98 A;  4BPF A;  2ONT A;  5EJD A;  1VQN P;  1K9M Q;  1BXI A;  2K5X A;  2KG9 A;  2K92 A;  2AVA A;  3DS4 A;  2JO0 A;  2PEJ A;  1AYI A;  1K30 A;  2KR5 A;  3CXC O;  1RO0 A;  2EHS A;  2LPK A;  2OTL P;  2XZ0 D;  3DTJ A;  2EFJ A;  2GDY A;  2PEN A;  1VQP P;  1L0I A;  4F37 A;  3B5I A;  2JAZ A;  1Q86 Q;  2OAR A;  5I4T G;  2GDW A;  2K0D X;  2LF4 A;  3CCU P;  1YJW P;  1GXG A;  4BPH A;  1X3O A;  1UJZ A;  2KGA A;  2CNR A;  2KW2 A;  4U0B A;  2JYL A;  1VQK P;  1DNY A;  2GZF A;  2KOP A;  5KP8 B;  3G26 A;  3HYB A;  3CD6 P;  5KP7 B;  1VQ5 P;  4COC A;  2CQ8 A;  4H2W C;  1CEI A;  2XZ1 C;  5EW5 E;  3EJE A;  2PEO A;  2KOS A;  1KD1 Q;  1JJ2 O;  2K0X A;  5HGO A;  1Q81 Q;  4R0M A;  5F2O A;  3DS0 A;  3CMA P;  1OR5 A;  2FAD A;  2MY5 A; 
#chains in the Genus database with same CATH homology
 3U43 A;  7CEI A;  2NO8 A;  1GXH A;  1ZNV A;  2ERH A;  2GYK A;  2K0D X;  1FR2 A;  2VLN A;  1AYI A;  3GKL C;  4QKO A;  2GZE A;  1GXG A;  1CEI A;  1UNK A;  2JBG A;  5EW5 E;  1E0H A;  1UJZ A;  1IMP A;  2GZJ A;  2JAZ A;  2VLQ A;  2GZF A;  1IMQ A;  2VLO A;  2WPT A;  1EMV A;  4F37 A;  1BXI A;  2GZG A;  2VLP A;  4UHP B;  1MZ8 A;  2JB0 A;  2K5X A;  3GJN A;  2GZI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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