1BAJA

Hiv-1 capsid protein c-terminal fragment plus gag p2 domain
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
71
structure length
71
Chain Sequence
TSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTAC
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Human immunodeficiency virus 1
publication title Structures of the HIV-1 capsid protein dimerization domain at 2.6 A resolution.
pubmed doi rcsb
molecule keywords GAG POLYPROTEIN
total genus 23
structure length 71
sequence length 71
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 1998-04-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 1bajA00
4U0CA 3G1GA 2JYGA 4XFZA 5HGMA 5JPAA 3DPHA 4M0IA 3DS5A 2JYLA 3DS2A 4XFYA 5HGNA 2L6EA 2XT1A 1AUMA 2KODA 2JO0A 3P05A 4U0FA 4WYMA 2XXMA 2M8PA 3DTJA 4XRQA 2M8NA 5HGLA 5HGOA 3MGEA 4PH0A 2BUOA 3LRYA 1EOQA 2ONTA 4COCA 3NTEA 3G1IA 1BAJA 1QRJA 3DS3A 4XROA 3G26A 4IPYA 3DS1A 5I4TG 4COPA 4U0BA 1E6JP 3G29A 3DS4A 2XV6A 4QNBA 5DCKA 2LF4A 3H47A 1D1DA 4U0DA 3DS0A 4U0EA 1A8OA 4PH1A 3H4EA 4U0AA 4XFXA 2M8LA 3VRLC 3G0VA 1EIAA 1A43A 2EIAA 3G28A 3G21A
chains in the Genus database with same CATH superfamily
4U0CA 5HGMA 2PEOA 4BPHA 2FQ2A 2MF4A 3EJEA 2DGYA 5HGLA 4PH0A 3LMOA 4XROA 1YJWP 5EJDA 4QNBA 2L9FA 3DS0A 1KLPA 2AF8A 1VKUA 1Z6MA 2KOOA 2KG9A 1T8KA 2L4BA 1AF8A 2WPTA 1M74A 2FHSC 1VQNP 2GDYA 3CXCO 2L22A 3DTJA 1Q81Q 2CWOA 5HGOA 3GZMA 3I56P 4MRTC 2GZGA 2N5IA 1BAJA 1YJNP 1ZMBA 3G29A 1KC8Q 1VQ8P 1MZ8A 4U0EA 2KWLA 2N50A 3G0VA 2K94A 3G21A 2JYLA 3DS2A 2KODA 2EHSA 1IMPA 5EW5E 3WBHA 3GJNA 2PY8A 1Q7YQ 1FR2A 4PH1A 3CC7P 3CCJP 5KP7B 3OW2O 1L0IA 3CCMP 2QNWA 2DNWA 1K73Q 1KD1Q 2VLQA 2KORA 4R0MA 2KGCA 1HY8A 2EFJA 2KG8A 5I4TG 5F2NA 2JAZA 1IMQA 4U0BA 4BPGA 2JGPA 5DCKA 2CQ8A 2MVVA 5KP6B 2EIAA 3G28A 2KOSA 2ROQA 3G6EP 4QKOA 5HGNA 1QVGO 4XRQA 2JO0A 2JU1A 2K0DX 2JQ4A 3CCQP 4COPA 3GKLC 3DS4A 1A8OA 2LIWA 1IUQA 2XXMA 3CC4P 1OR5A 1VQMP 4IZ6A 4WYMA 3EJDA 2PEJA 3B5IA 2N6YA 4H2YC 1F80D 2OTJP 1M6NA 1KQSO 4XFZA 2BHVA 3CCLP 2QEXP 2MR8A 1YI2P 2BUOA 2VLPA 2GZIA 2L0QA 5F2OA 5CZDB 3G4SP 2K92A 3M1MA 4U0DA 2FVFA 2FADA 2EG5A 1RNIA 3CD6P 1L0HA 2LPKA 2KGAA 2GDWA 1YHQP 1GXHA 2L6EA 4PWVB 2FVAA 3CMAP 4COCA 2GZJA 3G26A 4BPFA 1YIJP 2XV6A 2K93A 1EIAA 1ACPA 3G1GA 1UNKA 2JYGA 2LOLA 2LKIA 2FVEA 2PNGA 2KG6A 2KOQA 2PEIA 3NTEA 2N6ZA 4CA3A 5HV8A 3H0DA 2GDXA 2FACA 1VQOP 1EMVA 3DS3A 1YITP 1VQ7P 1K8AQ 4XFYA 2PEQA 2XT1A 3NY7B 5F2KA 1N8RQ 3LRYA 2ONTA 3RG6C 1M6EX 2JBGA 3CMEP 5KP8B 2MD9A 3H47A 1VQ4P 4H2XC 2GZEA 2M8LA 3G71P 3Q20A 2PEKA 2LIUA 1VHNA 2KGDA 1AYIA 3U43A 2FAEA 2XZ0D 2X2BA 2EHTA 1RO0A 2JU2A 2LL8A 4U0FA 2PEMA 3CCUP 1JJ2O 1D1DA 2LMLA 2N5HA 2CGQA 4XFXA 1ZNVA 4NEOA 2VSQA 3CPWO 1VQLP 1VQKP 1W2BO 1BXIA 2JB0A 2PENA 1CEIA 7CEIA 3CCEP 2XZ1C 1E0HA 3CCRP 2K0YA 3G1IA 4HKGA 2LF4A 2VLNA 2K0XA 4U0AA 3VRLC 1VQ6P 4PXHB 4DG9A 2GYKA 2K2QA 5JPAA 3GZLA 4M0IA 3EJBA 2OTLP 3HZQA 1AUMA 3P05A 1X3OA 2Z44A 3CE7A 2M8NA 1K30A 2KR5A 1HQBA 2MVUA 1Q86Q 1VQ5P 3E2DA 3DS1A 1GPJA 2AVAA 4GR6A 2AFEA 2KGEA 2N98A 1VQ9P 3CCSP 1S72P 1A43A 1M1KQ 3DS5A 5BS1A 2K5XA 3HYBA 1YJ9P 2CNRA 2FQ1A 2AFDA 2Z46A 4UHPB 1M90Q 1QRJA 1VQPP 1NQ4A 2VLOA 4IPYA 2FQ0A 2QA4P 1NJIQ 3I55P 3DPHA 1GXGA 5BS2A 3B4QA 2P9XA 2NO8A 2MR7A 2GZFA 1K9MQ 2OARA 2MY5A 2E1MA 1RO2A 3RG2A 2LTEA 2ERHA 3CCVP 2KOPA 4F37A 2Z45A 2M8PA 1QVFO 3MGEA 1EOQA 1Q82Q 1DNYA 3CC2P 4H2WC 1E6JP 1UJZA 2KW2A 2M5RA 5HVCA 3H4EA 1DV5A 2CG5B 4GR2A
chains in the Genus database with same CATH topology
4U0CA 3G1GA 2JYGA 5HGMA 5JPAA 2PEOA 4M0IA 2OTLP 3G6EP 3HZQA 5HGNA 1QVGO 1AUMA 4XRQA 2JO0A 3P05A 2Z44A 2DGYA 5HGLA 2M8NA 1K30A 1Q86Q 4PH0A 2PEIA 1VQ5P 3NTEA 4XROA 1YJWP 3E2DA 3DS1A 3CCQP 4COPA 3DS4A 4GR6A 4QNBA 3DS0A 1A8OA 3H0DA 1VQ9P 3CCSP 1VQOP 1S72P 1IUQA 2XXMA 1A43A 3DS3A 3CC4P 1YITP 1M74A 3DS5A 5BS1A 4XFYA 1K8AQ 1M1KQ 1VQMP 1VQ7P 1VQNP 3CXCO 2PEQA 2XT1A 3HYBA 4WYMA 3DTJA 1YJ9P 1Q81Q 2CWOA 5HGOA 5F2KA 2Z46A 3I56P 1N8RQ 3LRYA 2ONTA 2PEJA 3RG6C 1BAJA 1QRJA 1M90Q 1M6EX 1YJNP 3B5IA 1ZMBA 1VQPP 3CMEP 3G29A 1KC8Q 1VQ8P 3H47A 4U0EA 1VQ4P 2M8LA 3G71P 3G0VA 3Q20A 2PEKA 4IPYA 2OTJP 1M6NA 3G21A 1KQSO 2QA4P 4XFZA 1NJIQ 3I55P 3DPHA 2BHVA 3CCLP 2JYLA 3DS2A 1RO0A 4U0FA 2KODA 5BS2A 2PEMA 2P9XA 3WBHA 2QEXP 1YI2P 2BUOA 5F2OA 3CCUP 2PY8A 1Q7YQ 3G4SP 1JJ2O 1K9MQ 3M1MA 1D1DA 2OARA 4U0DA 4PH1A 4XFXA 2E1MA 1RO2A 3CC7P 2EG5A 1RNIA 3CD6P 3CPWO 3CCJP 3CCVP 3OW2O 1VQLP 1VQKP 1W2BO 3CCMP 2PENA 1YHQP 1K73Q 1KD1Q 2L6EA 2Z45A 2M8PA 3CCEP 1QVFO 3MGEA 3CMAP 3CCRP 1EOQA 2EFJA 4COCA 3G1IA 1Q82Q 3G26A 3CC2P 5I4TG 5F2NA 4U0BA 1E6JP 1YIJP 2XV6A 5DCKA 2LF4A 4U0AA 3H4EA 3VRLC 1VQ6P 1EIAA 2EIAA 4GR2A 3G28A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4U0C A;  3G1G A;  2JYG A;  4XFZ A;  5HGM A;  5JPA A;  3DPH A;  4M0I A;  3DS5 A;  2JYL A;  3DS2 A;  4XFY A;  5HGN A;  2L6E A;  2XT1 A;  1AUM A;  2KOD A;  2JO0 A;  3P05 A;  4U0F A;  4WYM A;  2XXM A;  2M8P A;  3DTJ A;  4XRQ A;  2M8N A;  5HGL A;  5HGO A;  3MGE A;  4PH0 A;  2BUO A;  3LRY A;  1EOQ A;  2ONT A;  4COC A;  3NTE A;  3G1I A;  1BAJ A;  1QRJ A;  3DS3 A;  4XRO A;  3G26 A;  4IPY A;  3DS1 A;  5I4T G;  4COP A;  4U0B A;  1E6J P;  3G29 A;  3DS4 A;  2XV6 A;  4QNB A;  5DCK A;  2LF4 A;  3H47 A;  1D1D A;  4U0D A;  3DS0 A;  4U0E A;  1A8O A;  4PH1 A;  3H4E A;  4U0A A;  4XFX A;  2M8L A;  3VRL C;  3G0V A;  1EIA A;  1A43 A;  2EIA A;  3G28 A;  3G21 A; 
#chains in the Genus database with same CATH topology
 4U0C A;  5HGM A;  2PEO A;  4BPH A;  2FQ2 A;  2MF4 A;  3EJE A;  2DGY A;  5HGL A;  4PH0 A;  3LMO A;  4XRO A;  1YJW P;  5EJD A;  4QNB A;  2L9F A;  3DS0 A;  1KLP A;  2AF8 A;  1VKU A;  1Z6M A;  2KOO A;  2KG9 A;  1T8K A;  2L4B A;  1AF8 A;  2WPT A;  1M74 A;  2FHS C;  1VQN P;  2GDY A;  3CXC O;  2L22 A;  3DTJ A;  1Q81 Q;  2CWO A;  5HGO A;  3GZM A;  3I56 P;  4MRT C;  2GZG A;  2N5I A;  1BAJ A;  1YJN P;  1ZMB A;  3G29 A;  1KC8 Q;  1VQ8 P;  1MZ8 A;  4U0E A;  2KWL A;  2N50 A;  3G0V A;  2K94 A;  3G21 A;  2JYL A;  3DS2 A;  2KOD A;  2EHS A;  1IMP A;  5EW5 E;  3WBH A;  3GJN A;  2PY8 A;  1Q7Y Q;  1FR2 A;  4PH1 A;  3CC7 P;  3CCJ P;  5KP7 B;  3OW2 O;  1L0I A;  3CCM P;  2QNW A;  2DNW A;  1K73 Q;  1KD1 Q;  2VLQ A;  2KOR A;  4R0M A;  2KGC A;  1HY8 A;  2EFJ A;  2KG8 A;  5I4T G;  5F2N A;  2JAZ A;  1IMQ A;  4U0B A;  4BPG A;  2JGP A;  5DCK A;  2CQ8 A;  2MVV A;  5KP6 B;  2EIA A;  3G28 A;  2KOS A;  2ROQ A;  3G6E P;  4QKO A;  5HGN A;  1QVG O;  4XRQ A;  2JO0 A;  2JU1 A;  2K0D X;  2JQ4 A;  3CCQ P;  4COP A;  3GKL C;  3DS4 A;  1A8O A;  2LIW A;  1IUQ A;  2XXM A;  3CC4 P;  1OR5 A;  1VQM P;  4IZ6 A;  4WYM A;  3EJD A;  2PEJ A;  3B5I A;  2N6Y A;  4H2Y C;  1F80 D;  2OTJ P;  1M6N A;  1KQS O;  4XFZ A;  2BHV A;  3CCL P;  2QEX P;  2MR8 A;  1YI2 P;  2BUO A;  2VLP A;  2GZI A;  2L0Q A;  5F2O A;  5CZD B;  3G4S P;  2K92 A;  3M1M A;  4U0D A;  2FVF A;  2FAD A;  2EG5 A;  1RNI A;  3CD6 P;  1L0H A;  2LPK A;  2KGA A;  2GDW A;  1YHQ P;  1GXH A;  2L6E A;  4PWV B;  2FVA A;  3CMA P;  4COC A;  2GZJ A;  3G26 A;  4BPF A;  1YIJ P;  2XV6 A;  2K93 A;  1EIA A;  1ACP A;  3G1G A;  1UNK A;  2JYG A;  2LOL A;  2LKI A;  2FVE A;  2PNG A;  2KG6 A;  2KOQ A;  2PEI A;  3NTE A;  2N6Z A;  4CA3 A;  5HV8 A;  3H0D A;  2GDX A;  2FAC A;  1VQO P;  1EMV A;  3DS3 A;  1YIT P;  1VQ7 P;  1K8A Q;  4XFY A;  2PEQ A;  2XT1 A;  3NY7 B;  5F2K A;  1N8R Q;  3LRY A;  2ONT A;  3RG6 C;  1M6E X;  2JBG A;  3CME P;  5KP8 B;  2MD9 A;  3H47 A;  1VQ4 P;  4H2X C;  2GZE A;  2M8L A;  3G71 P;  3Q20 A;  2PEK A;  2LIU A;  1VHN A;  2KGD A;  1AYI A;  3U43 A;  2FAE A;  2XZ0 D;  2X2B A;  2EHT A;  1RO0 A;  2JU2 A;  2LL8 A;  4U0F A;  2PEM A;  3CCU P;  1JJ2 O;  1D1D A;  2LML A;  2N5H A;  2CGQ A;  4XFX A;  1ZNV A;  4NEO A;  2VSQ A;  3CPW O;  1VQL P;  1VQK P;  1W2B O;  1BXI A;  2JB0 A;  2PEN A;  1CEI A;  7CEI A;  3CCE P;  2XZ1 C;  1E0H A;  3CCR P;  2K0Y A;  3G1I A;  4HKG A;  2LF4 A;  2VLN A;  2K0X A;  4U0A A;  3VRL C;  1VQ6 P;  4PXH B;  4DG9 A;  2GYK A;  2K2Q A;  5JPA A;  3GZL A;  4M0I A;  3EJB A;  2OTL P;  3HZQ A;  1AUM A;  3P05 A;  1X3O A;  2Z44 A;  3CE7 A;  2M8N A;  1K30 A;  2KR5 A;  1HQB A;  2MVU A;  1Q86 Q;  1VQ5 P;  3E2D A;  3DS1 A;  1GPJ A;  2AVA A;  4GR6 A;  2AFE A;  2KGE A;  2N98 A;  1VQ9 P;  3CCS P;  1S72 P;  1A43 A;  1M1K Q;  3DS5 A;  5BS1 A;  2K5X A;  3HYB A;  1YJ9 P;  2CNR A;  2FQ1 A;  2AFD A;  2Z46 A;  4UHP B;  1M90 Q;  1QRJ A;  1VQP P;  1NQ4 A;  2VLO A;  4IPY A;  2FQ0 A;  2QA4 P;  1NJI Q;  3I55 P;  3DPH A;  1GXG A;  5BS2 A;  3B4Q A;  2P9X A;  2NO8 A;  2MR7 A;  2GZF A;  1K9M Q;  2OAR A;  2MY5 A;  2E1M A;  1RO2 A;  3RG2 A;  2LTE A;  2ERH A;  3CCV P;  2KOP A;  4F37 A;  2Z45 A;  2M8P A;  1QVF O;  3MGE A;  1EOQ A;  1Q82 Q;  1DNY A;  3CC2 P;  4H2W C;  1E6J P;  1UJZ A;  2KW2 A;  2M5R A;  5HVC A;  3H4E A;  1DV5 A;  2CG5 B;  4GR2 A; 
#chains in the Genus database with same CATH homology
 4U0C A;  3G1G A;  2JYG A;  5HGM A;  5JPA A;  2PEO A;  4M0I A;  2OTL P;  3G6E P;  3HZQ A;  5HGN A;  1QVG O;  1AUM A;  4XRQ A;  2JO0 A;  3P05 A;  2Z44 A;  2DGY A;  5HGL A;  2M8N A;  1K30 A;  1Q86 Q;  4PH0 A;  2PEI A;  1VQ5 P;  3NTE A;  4XRO A;  1YJW P;  3E2D A;  3DS1 A;  3CCQ P;  4COP A;  3DS4 A;  4GR6 A;  4QNB A;  3DS0 A;  1A8O A;  3H0D A;  1VQ9 P;  3CCS P;  1VQO P;  1S72 P;  1IUQ A;  2XXM A;  1A43 A;  3DS3 A;  3CC4 P;  1YIT P;  1M74 A;  3DS5 A;  5BS1 A;  4XFY A;  1K8A Q;  1M1K Q;  1VQM P;  1VQ7 P;  1VQN P;  3CXC O;  2PEQ A;  2XT1 A;  3HYB A;  4WYM A;  3DTJ A;  1YJ9 P;  1Q81 Q;  2CWO A;  5HGO A;  5F2K A;  2Z46 A;  3I56 P;  1N8R Q;  3LRY A;  2ONT A;  2PEJ A;  3RG6 C;  1BAJ A;  1QRJ A;  1M90 Q;  1M6E X;  1YJN P;  3B5I A;  1ZMB A;  1VQP P;  3CME P;  3G29 A;  1KC8 Q;  1VQ8 P;  3H47 A;  4U0E A;  1VQ4 P;  2M8L A;  3G71 P;  3G0V A;  3Q20 A;  2PEK A;  4IPY A;  2OTJ P;  1M6N A;  3G21 A;  1KQS O;  2QA4 P;  4XFZ A;  1NJI Q;  3I55 P;  3DPH A;  2BHV A;  3CCL P;  2JYL A;  3DS2 A;  1RO0 A;  4U0F A;  2KOD A;  5BS2 A;  2PEM A;  2P9X A;  3WBH A;  2QEX P;  1YI2 P;  2BUO A;  5F2O A;  3CCU P;  2PY8 A;  1Q7Y Q;  3G4S P;  1JJ2 O;  1K9M Q;  3M1M A;  1D1D A;  2OAR A;  4U0D A;  4PH1 A;  4XFX A;  2E1M A;  1RO2 A;  3CC7 P;  2EG5 A;  1RNI A;  3CD6 P;  3CPW O;  3CCJ P;  3CCV P;  3OW2 O;  1VQL P;  1VQK P;  1W2B O;  3CCM P;  2PEN A;  1YHQ P;  1K73 Q;  1KD1 Q;  2L6E A;  2Z45 A;  2M8P A;  3CCE P;  1QVF O;  3MGE A;  3CMA P;  3CCR P;  1EOQ A;  2EFJ A;  4COC A;  3G1I A;  1Q82 Q;  3G26 A;  3CC2 P;  5I4T G;  5F2N A;  4U0B A;  1E6J P;  1YIJ P;  2XV6 A;  5DCK A;  2LF4 A;  4U0A A;  3H4E A;  3VRL C;  1VQ6 P;  1EIA A;  2EIA A;  4GR2 A;  3G28 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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