2PEJA

Crystal structure of rbcx point mutant y17a/y20l
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
109
structure length
109
Chain Sequence
FKKVAKETAITLQSALTLQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
molecule keywords ORF134
publication title Structure and Function of RbcX, an Assembly Chaperone for Hexadecameric Rubisco.
pubmed doi rcsb
source organism Synechococcus sp.
total genus 43
structure length 109
sequence length 109
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2007-04-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02341 RcbX RbcX protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.210 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2pejA00
2PEKA 2PEOA 4GR2A 2PEJA 2PY8A 3Q20A 4GR6A 5BS2A 2PEQA 2Z45A 5BS1A 2Z44A 3HYBA 2Z46A 2PEIA 2PEMA 3RG6C 2PENA
chains in the Genus database with same CATH superfamily
1ZMBA 2GDXA 2ERHA 2EG5A 3CCLP 2PEMA 2KOQA 2N5IA 1K30A 2VLOA 1JJ2O 3EJEA 3GZLA 2FAEA 1ZNVA 5F2KA 3CC4P 1M74A 3H4EA 3G28A 1EIAA 2FVEA 1IUQA 2L9FA 1GPJA 5CZDB 2LIWA 4H2YC 3CCRP 3H47A 1KQSO 3RG2A 2FQ2A 2MF4A 5DCKA 4M0IA 1ACPA 3U43A 2CQ8A 2MD9A 3G71P 2N5HA 2KWLA 4QKOA 2LKIA 2JAZA 2JYLA 5HVCA 4XFYA 1M90Q 1YI2P 3CPWO 2EIAA 4BPHA 3NY7B 2JGPA 2LL8A 2PEIA 2E1MA 1M6NA 4H2WC 2KORA 3CMEP 2GZIA 2KW2A 3MGEA 2MVVA 1Q81Q 1D1DA 2L22A 2GDWA 1KD1Q 2L4BA 4U0DA 5KP7B 3GZMA 1VQNP 2GZGA 1YJWP 3OW2O 2BUOA 1N8RQ 3CXCO 2N6YA 1K73Q 2KODA 2PENA 2VSQA 4H2XC 1RNIA 1AF8A 2GZJA 1EOQA 3NTEA 2OARA 2KR5A 2FQ1A 2GDYA 2GZFA 3DS1A 1VQ5P 1S72P 1UNKA 2CNRA 1OR5A 4IZ6A 1Q86Q 2QA4P 3EJDA 1T8KA 5F2OA 3P05A 1DNYA 1AUMA 2XXMA 4XFXA 3B5IA 4GR6A 2K2QA 2CWOA 2QNWA 3GJNA 5BS2A 3CMAP 2KOSA 3HYBA 4U0CA 1QRJA 3DS3A 2CGQA 5HGOA 2LMLA 2AVAA 4WYMA 5I4TG 3DS0A 2EHSA 3CCSP 1MZ8A 2GYKA 3DS2A 2Z46A 2AFDA 2PEOA 1AYIA 3GKLC 4R0MA 1DV5A 1VQ4P 2GZEA 4F37A 1L0HA 4XROA 5EJDA 5HGMA 3CCQP 1W2BO 4UHPB 1QVFO 3WBHA 4U0EA 1F80D 5HGNA 1GXGA 2KGCA 3G1GA 2MR7A 1L0IA 1YIJP 4BPFA 2VLPA 4PXHB 1RO0A 1E0HA 4GR2A 3CCEP 1YJNP 2L6EA 5BS1A 1EMVA 2KGEA 1Z6MA 3CCMP 2X2BA 1VQ7P 2KG9A 3VRLC 4CA3A 5KP6B 2N98A 1VKUA 2FACA 2FVFA 2JQ4A 2JB0A 1QVGO 2KG6A 1A43A 2M8LA 1KC8Q 2XZ1C 3CCVP 4XFZA 2BHVA 2JU2A 2K5XA 2K0YA 2K0DX 4HKGA 4COCA 1M6EX 3DTJA 2QEXP 1K9MQ 5JPAA 2JU1A 2KGDA 3LMOA 1FR2A 3CD6P 2FQ0A 2Z45A 2ONTA 4COPA 1CEIA 2OTJP 2MR8A 2MY5A 2ROQA 2VLQA 3CCUP 1M1KQ 2XT1A 5EW5E 2KGAA 2KG8A 3B4QA 2WPTA 2K94A 3I55P 4MRTC 2DNWA 1YITP 3M1MA 3E2DA 1VHNA 2P9XA 3G6EP 2LOLA 1X3OA 2JO0A 4IPYA 1IMQA 2PEJA 2LPKA 2K92A 4U0AA 3G29A 1UJZA 2VLNA 4PH0A 2LIUA 3G1IA 1VQ6P 1RO2A 2AF8A 3CC2P 1GXHA 2KOPA 3EJBA 4PH1A 2N6ZA 1VQMP 2DGYA 1A8OA 2N50A 2FVAA 2M5RA 2FADA 5KP8B 1VQOP 2EHTA 5HGLA 2JBGA 2LTEA 2MVUA 2Z44A 3G21A 4XRQA 3DS5A 2OTLP 3G26A 2XZ0D 1VQ8P 2LF4A 1E6JP 4BPGA 2EFJA 1Q82Q 3CC7P 3DS4A 2K0XA 1Q7YQ 4U0FA 3G4SP 3DPHA 2K93A 7CEIA 2CG5B 3H0DA 2XV6A 2JYGA 2FHSC 2M8PA 2PEKA 3Q20A 1NJIQ 4DG9A 2M8NA 3LRYA 1VQKP 1K8AQ 2PY8A 4QNBA 1VQPP 2KOOA 3G0VA 3I56P 5HV8A 4U0BA 2PNGA 2AFEA 4NEOA 1IMPA 1BXIA 2PEQA 1KLPA 4PWVB 2NO8A 3RG6C 1NQ4A 1HQBA 1BAJA 1HY8A 1VQLP 5F2NA 3CCJP 2L0QA 1YJ9P 3CE7A 1YHQP 3HZQA 1VQ9P
chains in the Genus database with same CATH topology
4GR2A 1ZMBA 3CCEP 1K73Q 4PH0A 1YJNP 2L6EA 2EG5A 5BS1A 3CCLP 2KODA 2PEMA 3G1IA 2PENA 1K30A 1VQ6P 1RO2A 3CCMP 3CC2P 1RNIA 1VQ7P 4PH1A 1JJ2O 3VRLC 1EOQA 3NTEA 2OARA 1VQMP 2DGYA 1A8OA 5F2KA 3DS1A 3CC4P 1M74A 1VQ5P 1S72P 3H4EA 3G28A 1VQOP 1EIAA 1IUQA 5HGLA 1Q86Q 2QA4P 1VQ9P 5F2OA 3CCRP 3H47A 1QVGO 1KQSO 1A43A 2M8LA 3P05A 1KC8Q 1AUMA 3CCVP 2Z44A 2XXMA 4XFZA 2BHVA 4XFXA 3G21A 5DCKA 4XRQA 3B5IA 3DS5A 4GR6A 4M0IA 2OTLP 3G26A 1VQ8P 2LF4A 1E6JP 2CWOA 5BS2A 2EFJA 4COCA 1Q82Q 3CMAP 1M6EX 3G71P 3CC7P 3DS4A 3DTJA 2QEXP 3HYBA 1K9MQ 5JPAA 4U0CA 1Q7YQ 1QRJA 3DS3A 5HGOA 4WYMA 5I4TG 3DS0A 3CCSP 4U0FA 3G4SP 3DPHA 2JYLA 3CD6P 3DS2A 3H0DA 2XV6A 2Z46A 2JYGA 2M8PA 2PEKA 2PEOA 3Q20A 4XFYA 1M90Q 1YI2P 1VQ4P 3CPWO 2Z45A 1NJIQ 2ONTA 2EIAA 2M8NA 4COPA 3LRYA 1VQKP 1K8AQ 4XROA 2PY8A 4QNBA 2OTJP 5HGMA 3CCQP 1W2BO 2PEIA 2E1MA 3CCUP 1M6NA 1M1KQ 3WBHA 2XT1A 1VQPP 1QVFO 4U0EA 3G0VA 3I56P 4U0BA 5HGNA 2PEQA 3CMEP 3MGEA 3RG6C 1Q81Q 1D1DA 1BAJA 3I55P 1KD1Q 3G1GA 1VQLP 5F2NA 1YITP 3M1MA 3E2DA 3CCJP 2P9XA 4U0DA 3G6EP 2JO0A 4IPYA 1YHQP 1YJ9P 1VQNP 1YJWP 2PEJA 1YIJP 3OW2O 2BUOA 1N8RQ 3HZQA 1RO0A 4U0AA 3G29A 3CXCO
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PEK A;  2PEO A;  4GR2 A;  2PEJ A;  2PY8 A;  3Q20 A;  4GR6 A;  5BS2 A;  2PEQ A;  2Z45 A;  5BS1 A;  2Z44 A;  3HYB A;  2Z46 A;  2PEI A;  2PEM A;  3RG6 C;  2PEN A; 
#chains in the Genus database with same CATH topology
 1ZMB A;  2GDX A;  2ERH A;  2EG5 A;  3CCL P;  2PEM A;  2KOQ A;  2N5I A;  1K30 A;  2VLO A;  1JJ2 O;  3EJE A;  3GZL A;  2FAE A;  1ZNV A;  5F2K A;  3CC4 P;  1M74 A;  3H4E A;  3G28 A;  1EIA A;  2FVE A;  1IUQ A;  2L9F A;  1GPJ A;  5CZD B;  2LIW A;  4H2Y C;  3CCR P;  3H47 A;  1KQS O;  3RG2 A;  2FQ2 A;  2MF4 A;  5DCK A;  4M0I A;  1ACP A;  3U43 A;  2CQ8 A;  2MD9 A;  3G71 P;  2N5H A;  2KWL A;  4QKO A;  2LKI A;  2JAZ A;  2JYL A;  5HVC A;  4XFY A;  1M90 Q;  1YI2 P;  3CPW O;  2EIA A;  4BPH A;  3NY7 B;  2JGP A;  2LL8 A;  2PEI A;  2E1M A;  1M6N A;  4H2W C;  2KOR A;  3CME P;  2GZI A;  2KW2 A;  3MGE A;  2MVV A;  1Q81 Q;  1D1D A;  2L22 A;  2GDW A;  1KD1 Q;  2L4B A;  4U0D A;  5KP7 B;  3GZM A;  1VQN P;  2GZG A;  1YJW P;  3OW2 O;  2BUO A;  1N8R Q;  3CXC O;  2N6Y A;  1K73 Q;  2KOD A;  2PEN A;  2VSQ A;  4H2X C;  1RNI A;  1AF8 A;  2GZJ A;  1EOQ A;  3NTE A;  2OAR A;  2KR5 A;  2FQ1 A;  2GDY A;  2GZF A;  3DS1 A;  1VQ5 P;  1S72 P;  1UNK A;  2CNR A;  1OR5 A;  4IZ6 A;  1Q86 Q;  2QA4 P;  3EJD A;  1T8K A;  5F2O A;  3P05 A;  1DNY A;  1AUM A;  2XXM A;  4XFX A;  3B5I A;  4GR6 A;  2K2Q A;  2CWO A;  2QNW A;  3GJN A;  5BS2 A;  3CMA P;  2KOS A;  3HYB A;  4U0C A;  1QRJ A;  3DS3 A;  2CGQ A;  5HGO A;  2LML A;  2AVA A;  4WYM A;  5I4T G;  3DS0 A;  2EHS A;  3CCS P;  1MZ8 A;  2GYK A;  3DS2 A;  2Z46 A;  2AFD A;  2PEO A;  1AYI A;  3GKL C;  4R0M A;  1DV5 A;  1VQ4 P;  2GZE A;  4F37 A;  1L0H A;  4XRO A;  5EJD A;  5HGM A;  3CCQ P;  1W2B O;  4UHP B;  1QVF O;  3WBH A;  4U0E A;  1F80 D;  5HGN A;  1GXG A;  2KGC A;  3G1G A;  2MR7 A;  1L0I A;  1YIJ P;  4BPF A;  2VLP A;  4PXH B;  1RO0 A;  1E0H A;  4GR2 A;  3CCE P;  1YJN P;  2L6E A;  5BS1 A;  1EMV A;  2KGE A;  1Z6M A;  3CCM P;  2X2B A;  1VQ7 P;  2KG9 A;  3VRL C;  4CA3 A;  5KP6 B;  2N98 A;  1VKU A;  2FAC A;  2FVF A;  2JQ4 A;  2JB0 A;  1QVG O;  2KG6 A;  1A43 A;  2M8L A;  1KC8 Q;  2XZ1 C;  3CCV P;  4XFZ A;  2BHV A;  2JU2 A;  2K5X A;  2K0Y A;  2K0D X;  4HKG A;  4COC A;  1M6E X;  3DTJ A;  2QEX P;  1K9M Q;  5JPA A;  2JU1 A;  2KGD A;  3LMO A;  1FR2 A;  3CD6 P;  2FQ0 A;  2Z45 A;  2ONT A;  4COP A;  1CEI A;  2OTJ P;  2MR8 A;  2MY5 A;  2ROQ A;  2VLQ A;  3CCU P;  1M1K Q;  2XT1 A;  5EW5 E;  2KGA A;  2KG8 A;  3B4Q A;  2WPT A;  2K94 A;  3I55 P;  4MRT C;  2DNW A;  1YIT P;  3M1M A;  3E2D A;  1VHN A;  2P9X A;  3G6E P;  2LOL A;  1X3O A;  2JO0 A;  4IPY A;  1IMQ A;  2PEJ A;  2LPK A;  2K92 A;  4U0A A;  3G29 A;  1UJZ A;  2VLN A;  4PH0 A;  2LIU A;  3G1I A;  1VQ6 P;  1RO2 A;  2AF8 A;  3CC2 P;  1GXH A;  2KOP A;  3EJB A;  4PH1 A;  2N6Z A;  1VQM P;  2DGY A;  1A8O A;  2N50 A;  2FVA A;  2M5R A;  2FAD A;  5KP8 B;  1VQO P;  2EHT A;  5HGL A;  2JBG A;  2LTE A;  2MVU A;  2Z44 A;  3G21 A;  4XRQ A;  3DS5 A;  2OTL P;  3G26 A;  2XZ0 D;  1VQ8 P;  2LF4 A;  1E6J P;  4BPG A;  2EFJ A;  1Q82 Q;  3CC7 P;  3DS4 A;  2K0X A;  1Q7Y Q;  4U0F A;  3G4S P;  3DPH A;  2K93 A;  7CEI A;  2CG5 B;  3H0D A;  2XV6 A;  2JYG A;  2FHS C;  2M8P A;  2PEK A;  3Q20 A;  1NJI Q;  4DG9 A;  2M8N A;  3LRY A;  1VQK P;  1K8A Q;  2PY8 A;  4QNB A;  1VQP P;  2KOO A;  3G0V A;  3I56 P;  5HV8 A;  4U0B A;  2PNG A;  2AFE A;  4NEO A;  1IMP A;  1BXI A;  2PEQ A;  1KLP A;  4PWV B;  2NO8 A;  3RG6 C;  1NQ4 A;  1HQB A;  1BAJ A;  1HY8 A;  1VQL P;  5F2N A;  3CCJ P;  2L0Q A;  1YJ9 P;  3CE7 A;  1YHQ P;  3HZQ A;  1VQ9 P; 
#chains in the Genus database with same CATH homology
 4GR2 A;  1ZMB A;  3CCE P;  1K73 Q;  4PH0 A;  1YJN P;  2L6E A;  2EG5 A;  5BS1 A;  3CCL P;  2KOD A;  2PEM A;  3G1I A;  2PEN A;  1K30 A;  1VQ6 P;  1RO2 A;  3CCM P;  3CC2 P;  1RNI A;  1VQ7 P;  4PH1 A;  1JJ2 O;  3VRL C;  1EOQ A;  3NTE A;  2OAR A;  1VQM P;  2DGY A;  1A8O A;  5F2K A;  3DS1 A;  3CC4 P;  1M74 A;  1VQ5 P;  1S72 P;  3H4E A;  3G28 A;  1VQO P;  1EIA A;  1IUQ A;  5HGL A;  1Q86 Q;  2QA4 P;  1VQ9 P;  5F2O A;  3CCR P;  3H47 A;  1QVG O;  1KQS O;  1A43 A;  2M8L A;  3P05 A;  1KC8 Q;  1AUM A;  3CCV P;  2Z44 A;  2XXM A;  4XFZ A;  2BHV A;  4XFX A;  3G21 A;  5DCK A;  4XRQ A;  3B5I A;  3DS5 A;  4GR6 A;  4M0I A;  2OTL P;  3G26 A;  1VQ8 P;  2LF4 A;  1E6J P;  2CWO A;  5BS2 A;  2EFJ A;  4COC A;  1Q82 Q;  3CMA P;  1M6E X;  3G71 P;  3CC7 P;  3DS4 A;  3DTJ A;  2QEX P;  3HYB A;  1K9M Q;  5JPA A;  4U0C A;  1Q7Y Q;  1QRJ A;  3DS3 A;  5HGO A;  4WYM A;  5I4T G;  3DS0 A;  3CCS P;  4U0F A;  3G4S P;  3DPH A;  2JYL A;  3CD6 P;  3DS2 A;  3H0D A;  2XV6 A;  2Z46 A;  2JYG A;  2M8P A;  2PEK A;  2PEO A;  3Q20 A;  4XFY A;  1M90 Q;  1YI2 P;  1VQ4 P;  3CPW O;  2Z45 A;  1NJI Q;  2ONT A;  2EIA A;  2M8N A;  4COP A;  3LRY A;  1VQK P;  1K8A Q;  4XRO A;  2PY8 A;  4QNB A;  2OTJ P;  5HGM A;  3CCQ P;  1W2B O;  2PEI A;  2E1M A;  3CCU P;  1M6N A;  1M1K Q;  3WBH A;  2XT1 A;  1VQP P;  1QVF O;  4U0E A;  3G0V A;  3I56 P;  4U0B A;  5HGN A;  2PEQ A;  3CME P;  3MGE A;  3RG6 C;  1Q81 Q;  1D1D A;  1BAJ A;  3I55 P;  1KD1 Q;  3G1G A;  1VQL P;  5F2N A;  1YIT P;  3M1M A;  3E2D A;  3CCJ P;  2P9X A;  4U0D A;  3G6E P;  2JO0 A;  4IPY A;  1YHQ P;  1YJ9 P;  1VQN P;  1YJW P;  2PEJ A;  1YIJ P;  3OW2 O;  2BUO A;  1N8R Q;  3HZQ A;  1RO0 A;  4U0A A;  3G29 A;  3CXC O; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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