The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
20
|
sequence length |
78
|
structure length |
78
|
Chain Sequence |
HMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDTVKLIL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Adaptation of aminoacyl-tRNA synthetase catalytic core to carrier protein aminoacylation.
pubmed doi rcsb |
molecule keywords |
Amino acid--[acyl-carrier-protein] ligase 1
|
molecule tags |
Ligase
|
source organism |
Bradyrhizobium japonicum
|
total genus |
20
|
structure length |
78
|
sequence length |
78
|
chains with identical sequence |
D
|
ec nomenclature | |
pdb deposition date | 2012-09-13 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
C | PF00550 | PP-binding | Phosphopantetheine attachment site |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Alpha | Orthogonal Bundle | Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A | ACP-like |
#chains in the Genus database with same CATH superfamily 2K92 A; 2L22 A; 1NQ4 A; 2KWL A; 3CE7 A; 2MR8 A; 3EJE A; 3EJD A; 2N6Z A; 2FQ1 A; 2FVA A; 4H2X C; 1VKU A; 3GZM A; 2GDX A; 2FAD A; 2JQ4 A; 4NEO A; 2CG5 B; 2LOL A; 2AVA A; 2LL8 A; 2GDY A; 2EHS A; 1F80 D; 5EJD A; 2FHS C; 2FQ0 A; 2JU2 A; 2K94 A; 1X3O A; 2M5R A; 2KOO A; 2MR7 A; 2MY5 A; 4H2Y C; 5KP6 B; 5KP8 B; 3EJB A; 3GZL A; 2N50 A; 2MVV A; 2LKI A; 2CQ8 A; 1ACP A; 2LTE A; 2LIU A; 5CZD B; 2LIW A; 2K0Y A; 2KR5 A; 2XZ1 C; 5HV8 A; 2EHT A; 2KOP A; 2N5I A; 5HVC A; 2JGP A; 4PXH B; 4MRT C; 2LPK A; 1HY8 A; 2KGE A; 2FAE A; 1T8K A; 2KG6 A; 4DG9 A; 1OR5 A; 2CNR A; 2KOS A; 3LMO A; 2VSQ A; 2PNG A; 2QNW A; 4BPF A; 1AF8 A; 4R0M A; 2KG9 A; 2L9F A; 4H2W C; 2JU1 A; 1KLP A; 2LML A; 2FVE A; 4PWV B; 4CA3 A; 2AF8 A; 3RG2 A; 1DNY A; 2ROQ A; 4HKG A; 2N98 A; 1DV5 A; 1L0I A; 5KP7 B; 3NY7 B; 2KGD A; 2X2B A; 1HQB A; 2KOQ A; 2KOR A; 2N6Y A; 2MD9 A; 2AFE A; 2K93 A; 4IZ6 A; 2MVU A; 2FQ2 A; 2KGA A; 2MF4 A; 2K0X A; 2K2Q A; 2CGQ A; 4BPH A; 2AFD A; 2L4B A; 2XZ0 D; 2FAC A; 2FVF A; 2N5H A; 2KW2 A; 2GDW A; 2DNW A; 2L0Q A; 4BPG A; 2KG8 A; 2KGC A; 1L0H A; #chains in the Genus database with same CATH topology 1ZNV A; 1NQ4 A; 2PEQ A; 1YJ9 P; 3H47 A; 2MR8 A; 3EJE A; 1A43 A; 3DS1 A; 1K30 A; 4XFX A; 5F2O A; 1VQO P; 2CG5 B; 2LOL A; 3LRY A; 2AVA A; 2LL8 A; 4COC A; 1GXH A; 3CC7 P; 2JO0 A; 2XT1 A; 4IPY A; 2FHS C; 4QKO A; 4H2Y C; 5KP6 B; 1IUQ A; 1M6N A; 1VQ8 P; 3GZL A; 1MZ8 A; 5HGO A; 2JYL A; 5HGL A; 1M90 Q; 2KR5 A; 3B4Q A; 3DTJ A; 4COP A; 5HVC A; 2CWO A; 1AUM A; 1T8K A; 3G29 A; 3NTE A; 1KC8 Q; 4BPF A; 2PEK A; 1AF8 A; 1AYI A; 4R0M A; 3WBH A; 3U43 A; 4PWV B; 2PEI A; 2Z45 A; 3G26 A; 1YIT P; 3CCE P; 1DV5 A; 5KP7 B; 1RO0 A; 1UJZ A; 2EG5 A; 2EFJ A; 1CEI A; 1FR2 A; 2GZI A; 2MF4 A; 4BPH A; 2GZG A; 2WPT A; 2XZ0 D; 2FVF A; 2M8L A; 3M1M A; 1VQ7 P; 2K5X A; 1KQS O; 2K92 A; 7CEI A; 3H4E A; 4UHP B; 3B5I A; 2N6Z A; 1BXI A; 4H2X C; 1VKU A; 2GDX A; 1GXG A; 4NEO A; 3DPH A; 5BS2 A; 1F80 D; 5EJD A; 4WYM A; 1Q82 Q; 1IMP A; 3CCM P; 2MR7 A; 2KOO A; 2VLN A; 2E1M A; 2CQ8 A; 4QNB A; 2PEJ A; 2XZ1 C; 3CCR P; 2EHT A; 3DS2 A; 1ZMB A; 2JGP A; 4PXH B; 2P9X A; 2DGY A; 4DG9 A; 5F2N A; 2PY8 A; 2KOS A; 4GR6 A; 4XRQ A; 2QA4 P; 3GJN A; 3LMO A; 3MGE A; 1Q7Y Q; 1VQK P; 2GYK A; 2QNW A; 1M1K Q; 2M8P A; 2L9F A; 3CD6 P; 2LF4 A; 1VQ6 P; 2JAZ A; 2JU1 A; 1KLP A; 4XFY A; 2LML A; 4PH1 A; 5EW5 E; 2JB0 A; 4CA3 A; 1E6J P; 2ROQ A; 3CPW O; 4HKG A; 5HGM A; 3NY7 B; 2KOQ A; 2KOR A; 3G6E P; 1VQN P; 1YJN P; 4IZ6 A; 2MVU A; 2JBG A; 2K0X A; 3G1G A; 2CGQ A; 1Q86 Q; 3I56 P; 4GR2 A; 2GDW A; 2DNW A; 2L0Q A; 1W2B O; 4U0D A; 2KG8 A; 2KGC A; 1E0H A; 2L22 A; 3RG6 C; 3VRL C; 3CE7 A; 2BHV A; 1JJ2 O; 3EJD A; 2VLO A; 2FQ1 A; 3CC2 P; 2XXM A; 2XV6 A; 2FVA A; 1UNK A; 5I4T G; 2FAD A; 2JQ4 A; 3G71 P; 3G21 A; 2M8N A; 2OTL P; 2GDY A; 1EIA A; 2GZJ A; 1D1D A; 2FQ0 A; 4U0C A; 2JU2 A; 1X3O A; 2QEX P; 5KP8 B; 2MY5 A; 1YIJ P; 5DCK A; 1YHQ P; 2L6E A; 2MVV A; 1S72 P; 4XFZ A; 1IMQ A; 1BAJ A; 2LKI A; 2GZE A; 1M6E X; 4U0B A; 1Q81 Q; 1M74 A; 5HGN A; 3I55 P; 2LTE A; 5CZD B; 1QRJ A; 2LIW A; 1YJW P; 1QVF O; 2N5I A; 4U0F A; 4MRT C; 2LPK A; 3G1I A; 1HY8 A; 2FAE A; 2EIA A; 2CNR A; 2PNG A; 3CXC O; 4F37 A; 1YI2 P; 2GZF A; 2ONT A; 4H2W C; 3DS0 A; 2FVE A; 1EOQ A; 3RG2 A; 1VQP P; 1VQ5 P; 3CCS P; 2X2B A; 3P05 A; 5JPA A; 2PEM A; 2MD9 A; 5BS1 A; 2K93 A; 1K73 Q; 3G4S P; 2ERH A; 3HZQ A; 2KOD A; 3GKL C; 1VQL P; 4XRO A; 2FAC A; 1VQ4 P; 1KD1 Q; 2KW2 A; 1Z6M A; 2K0D X; 4BPG A; 2N5H A; 1L0H A; 3H0D A; 2KWL A; 1RNI A; 3CME P; 1K9M Q; 1NJI Q; 3CCQ P; 1RO2 A; 3GZM A; 3CMA P; 3DS4 A; 3CC4 P; 1K8A Q; 2NO8 A; 3OW2 O; 1A8O A; 2EHS A; 4U0E A; 1VQ9 P; 2K94 A; 2M5R A; 3EJB A; 2N50 A; 3CCV P; 2JYG A; 1ACP A; 2LIU A; 2VLP A; 2K0Y A; 5HV8 A; 2KOP A; 2PEN A; 2Z44 A; 2KGE A; 2KG6 A; 2BUO A; 2PEO A; 1OR5 A; 3CCL P; 3CCJ P; 2VSQ A; 5F2K A; 4U0A A; 1GPJ A; 1N8R Q; 2OAR A; 3Q20 A; 2KG9 A; 1VHN A; 2AF8 A; 1DNY A; 2N98 A; 1QVG O; 1L0I A; 1VQM P; 2KGD A; 3E2D A; 1HQB A; 3G0V A; 2N6Y A; 4M0I A; 2AFE A; 2Z46 A; 2VLQ A; 1EMV A; 2FQ2 A; 2KGA A; 2K2Q A; 3HYB A; 3DS5 A; 3DS3 A; 2OTJ P; 2AFD A; 2L4B A; 4PH0 A; 3G28 A; 3CCU P; #chains in the Genus database with same CATH homology 2K92 A; 2L22 A; 1NQ4 A; 2KWL A; 3CE7 A; 2MR8 A; 3EJE A; 3EJD A; 2N6Z A; 2FQ1 A; 2FVA A; 4H2X C; 1VKU A; 3GZM A; 2GDX A; 2FAD A; 2JQ4 A; 4NEO A; 2CG5 B; 2LOL A; 2AVA A; 2LL8 A; 2GDY A; 2EHS A; 1F80 D; 5EJD A; 2FHS C; 2FQ0 A; 2JU2 A; 2K94 A; 1X3O A; 2M5R A; 2KOO A; 2MR7 A; 2MY5 A; 4H2Y C; 5KP6 B; 5KP8 B; 3EJB A; 3GZL A; 2N50 A; 2MVV A; 2LKI A; 2CQ8 A; 1ACP A; 2LTE A; 2LIU A; 5CZD B; 2LIW A; 2K0Y A; 2KR5 A; 2XZ1 C; 5HV8 A; 2EHT A; 2KOP A; 2N5I A; 5HVC A; 2JGP A; 4PXH B; 4MRT C; 2LPK A; 1HY8 A; 2KGE A; 2FAE A; 1T8K A; 2KG6 A; 4DG9 A; 1OR5 A; 2CNR A; 2KOS A; 3LMO A; 2VSQ A; 2PNG A; 2QNW A; 4BPF A; 1AF8 A; 4R0M A; 2KG9 A; 2L9F A; 4H2W C; 2JU1 A; 1KLP A; 2LML A; 2FVE A; 4PWV B; 4CA3 A; 2AF8 A; 3RG2 A; 1DNY A; 2ROQ A; 4HKG A; 2N98 A; 1DV5 A; 1L0I A; 5KP7 B; 3NY7 B; 2KGD A; 2X2B A; 1HQB A; 2KOQ A; 2KOR A; 2N6Y A; 2MD9 A; 2AFE A; 2K93 A; 4IZ6 A; 2MVU A; 2FQ2 A; 2KGA A; 2MF4 A; 2K0X A; 2K2Q A; 2CGQ A; 4BPH A; 2AFD A; 2L4B A; 2XZ0 D; 2FAC A; 2FVF A; 2N5H A; 2KW2 A; 2GDW A; 2DNW A; 2L0Q A; 4BPG A; 2KG8 A; 2KGC A; 1L0H A;
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