2NO8A

Nmr structure analysis of the colicin immuntiy protein im2
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
85
structure length
85
Chain Sequence
ELKHSISDYTEAEFLEFVKKICRAEGATEEDDNKLVREFERLTEHPDGSDLIYYPRDDREDSPEGIVKEIKEWRAANGKSGFKQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords Colicin-E2 immunity protein
publication title Structural Models for non Cognate Complexes of the DNase Domain of Colicin E9 and Colicin Immunity Proteins
rcsb
source organism Escherichia coli
total genus 25
structure length 85
sequence length 85
ec nomenclature
pdb deposition date 2006-10-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2no8A00
1AYIA 4QKOA 1MZ8A 1GXHA 2GZIA 2GZGA 2GZEA 2VLQA 2JBGA 2K0DX 1BXIA 1IMQA 5EW5E 2K5XA 2VLPA 4F37A 1IMPA 1UJZA 1E0HA 2JAZA 2VLNA 2GYKA 1GXGA 2WPTA 3GKLC 2VLOA 4UHPB 3U43A 2NO8A 3GJNA 1FR2A 7CEIA 2JB0A 2GZJA 1CEIA 1EMVA 1ZNVA 2ERHA 2GZFA 1UNKA
chains in the Genus database with same CATH superfamily
3OW2O 4COPA 2FAEA 1VQ4P 2PEKA 1ZMBA 1BXIA 3B4QA 3I56P 1E0HA 2QEXP 2AFEA 3LRYA 2N5HA 1VQOP 3GKLC 3H47A 3CPWO 1YJ9P 1Q86Q 3RG6C 4XFXA 4XROA 2JB0A 2OARA 2JYLA 2ERHA 1EIAA 3NTEA 4PWVB 1X3OA 4IPYA 2L22A 3DS0A 2MR8A 2P9XA 3MGEA 2KG9A 2L9FA 3CCEP 1M90Q 2JGPA 1VQKP 1NQ4A 1Z6MA 2FHSC 3DS1A 2N6YA 2Z44A 3CD6P 1KLPA 2EIAA 5I4TG 2KWLA 1QVGO 1YHQP 1MZ8A 2GZGA 2PEOA 2K0DX 5HGOA 2E1MA 3G29A 1F80D 3G71P 4GR6A 2LL8A 2ONTA 2MD9A 4BPGA 2K94A 2KODA 2X2BA 3CE7A 1VQNP 3CCMP 1IMPA 2LIUA 4BPFA 2CG5B 2GZJA 1EOQA 2M5RA 3DS5A 1CEIA 2FVAA 1UNKA 2XZ0D 3EJBA 2CQ8A 4XFYA 1DNYA 3G26A 4H2WC 1YI2P 1KC8Q 3CCVP 3I55P 2JYGA 1K9MQ 1RNIA 3VRLC 2PEIA 1UJZA 3E2DA 2Z45A 3DPHA 2N98A 1E6JP 1DV5A 2BUOA 2JU2A 2KOQA 5HV8A 3GJNA 1YIJP 5HVCA 2AFDA 2K0YA 1Q82Q 5EJDA 2K0XA 2XT1A 3DS3A 3CCLP 3CCQP 2GZEA 4MRTC 4U0EA 1RO2A 2M8LA 2GYKA 1GXGA 2LPKA 5HGNA 5F2KA 1K73Q 2OTLP 5HGMA 2L0QA 2EG5A 1M74A 2MF4A 5F2OA 2LMLA 2MVVA 1YJWP 3EJEA 1N8RQ 2EHTA 2GDXA 5JPAA 3G1GA 1YJNP 1YITP 4U0BA 1VQ8P 1VHNA 5KP7B 1Q81Q 4H2XC 4IZ6A 1AUMA 2KR5A 2VSQA 1KQSO 2M8PA 1ZNVA 4QNBA 2N5IA 3CCRP 4GR2A 4H2YC 2JBGA 2FACA 3G21A 2K5XA 1KD1Q 2FADA 2K2QA 5CZDB 2QA4P 2KOSA 1VQPP 2KORA 3CC7P 3CCUP 3M1MA 2MVUA 1GXHA 3G28A 4BPHA 2JO0A 5EW5E 2DNWA 2K93A 1VQ7P 4PXHB 2WPTA 2DGYA 3LMOA 2KG8A 1QRJA 2KOPA 2XV6A 3CCJP 2AF8A 2Z46A 3P05A 4PH0A 5HGLA 2FQ0A 2MR7A 2L4BA 3DS2A 2MY5A 2ROQA 5BS2A 4XFZA 2VLOA 3U43A 7CEIA 3HYBA 1K8AQ 1AYIA 3G4SP 1GPJA 2PEJA 1A8OA 3NY7B 1VQ9P 2M8NA 2PEQA 1VQ6P 2FVFA 2XZ1C 3CC2P 2GZFA 5DCKA 3GZLA 1ACPA 2FQ1A 2GZIA 4U0DA 4WYMA 3CXCO 2CWOA 2AVAA 1A43A 3B5IA 2KOOA 4DG9A 3CMAP 1OR5A 3RG2A 2PENA 1FR2A 4U0AA 2KGAA 3CMEP 5KP8B 4CA3A 1EMVA 4U0FA 4QKOA 1M1KQ 3Q20A 5KP6B 1L0IA 1W2BO 3WBHA 2N50A 2KW2A 5F2NA 2JU1A 1Q7YQ 2PEMA 2KGCA 2KGDA 1BAJA 2GDYA 2PY8A 2JQ4A 3G1IA 2CNRA 2EFJA 1JJ2O 1RO0A 1L0HA 1IMQA 1T8KA 3G0VA 2VLPA 5BS1A 2EHSA 2JAZA 3H4EA 1VQ5P 2BHVA 3H0DA 4HKGA 3CCSP 1VQMP 3GZMA 4COCA 2LTEA 1M6NA 4R0MA 2FVEA 1S72P 4XRQA 1M6EX 2LIWA 3G6EP 2LOLA 2LKIA 1VQLP 2FQ2A 4UHPB 2N6ZA 2LF4A 3CC4P 2GDWA 1AF8A 2PNGA 4NEOA 1QVFO 1HY8A 3DS4A 2QNWA 2K92A 2L6EA 4PH1A 1NJIQ 2CGQA 4M0IA 3DTJA 1VKUA 2KG6A 1HQBA 2KGEA 1IUQA 2VLQA 1D1DA 2XXMA 4F37A 2VLNA 3EJDA 2NO8A 4U0CA 2OTJP 3HZQA 1K30A
chains in the Genus database with same CATH topology
1AYIA 4QKOA 1MZ8A 1GXHA 2GZIA 2GZGA 2GZEA 2VLQA 2JBGA 2K0DX 1BXIA 1IMQA 5EW5E 2K5XA 2VLPA 4F37A 1IMPA 1UJZA 1E0HA 2JAZA 2VLNA 2GYKA 1GXGA 2WPTA 3GKLC 2VLOA 4UHPB 3U43A 2NO8A 3GJNA 1FR2A 7CEIA 2JB0A 2GZJA 1CEIA 1EMVA 1ZNVA 2ERHA 2GZFA 1UNKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AYI A;  4QKO A;  1MZ8 A;  1GXH A;  2GZI A;  2GZG A;  2GZE A;  2VLQ A;  2JBG A;  2K0D X;  1BXI A;  1IMQ A;  5EW5 E;  2K5X A;  2VLP A;  4F37 A;  1IMP A;  1UJZ A;  1E0H A;  2JAZ A;  2VLN A;  2GYK A;  1GXG A;  2WPT A;  3GKL C;  2VLO A;  4UHP B;  3U43 A;  2NO8 A;  3GJN A;  1FR2 A;  7CEI A;  2JB0 A;  2GZJ A;  1CEI A;  1EMV A;  1ZNV A;  2ERH A;  2GZF A;  1UNK A; 
#chains in the Genus database with same CATH topology
 3OW2 O;  4COP A;  2FAE A;  1VQ4 P;  2PEK A;  1ZMB A;  1BXI A;  3B4Q A;  3I56 P;  1E0H A;  2QEX P;  2AFE A;  3LRY A;  2N5H A;  1VQO P;  3GKL C;  3H47 A;  3CPW O;  1YJ9 P;  1Q86 Q;  3RG6 C;  4XFX A;  4XRO A;  2JB0 A;  2OAR A;  2JYL A;  2ERH A;  1EIA A;  3NTE A;  4PWV B;  1X3O A;  4IPY A;  2L22 A;  3DS0 A;  2MR8 A;  2P9X A;  3MGE A;  2KG9 A;  2L9F A;  3CCE P;  1M90 Q;  2JGP A;  1VQK P;  1NQ4 A;  1Z6M A;  2FHS C;  3DS1 A;  2N6Y A;  2Z44 A;  3CD6 P;  1KLP A;  2EIA A;  5I4T G;  2KWL A;  1QVG O;  1YHQ P;  1MZ8 A;  2GZG A;  2PEO A;  2K0D X;  5HGO A;  2E1M A;  3G29 A;  1F80 D;  3G71 P;  4GR6 A;  2LL8 A;  2ONT A;  2MD9 A;  4BPG A;  2K94 A;  2KOD A;  2X2B A;  3CE7 A;  1VQN P;  3CCM P;  1IMP A;  2LIU A;  4BPF A;  2CG5 B;  2GZJ A;  1EOQ A;  2M5R A;  3DS5 A;  1CEI A;  2FVA A;  1UNK A;  2XZ0 D;  3EJB A;  2CQ8 A;  4XFY A;  1DNY A;  3G26 A;  4H2W C;  1YI2 P;  1KC8 Q;  3CCV P;  3I55 P;  2JYG A;  1K9M Q;  1RNI A;  3VRL C;  2PEI A;  1UJZ A;  3E2D A;  2Z45 A;  3DPH A;  2N98 A;  1E6J P;  1DV5 A;  2BUO A;  2JU2 A;  2KOQ A;  5HV8 A;  3GJN A;  1YIJ P;  5HVC A;  2AFD A;  2K0Y A;  1Q82 Q;  5EJD A;  2K0X A;  2XT1 A;  3DS3 A;  3CCL P;  3CCQ P;  2GZE A;  4MRT C;  4U0E A;  1RO2 A;  2M8L A;  2GYK A;  1GXG A;  2LPK A;  5HGN A;  5F2K A;  1K73 Q;  2OTL P;  5HGM A;  2L0Q A;  2EG5 A;  1M74 A;  2MF4 A;  5F2O A;  2LML A;  2MVV A;  1YJW P;  3EJE A;  1N8R Q;  2EHT A;  2GDX A;  5JPA A;  3G1G A;  1YJN P;  1YIT P;  4U0B A;  1VQ8 P;  1VHN A;  5KP7 B;  1Q81 Q;  4H2X C;  4IZ6 A;  1AUM A;  2KR5 A;  2VSQ A;  1KQS O;  2M8P A;  1ZNV A;  4QNB A;  2N5I A;  3CCR P;  4GR2 A;  4H2Y C;  2JBG A;  2FAC A;  3G21 A;  2K5X A;  1KD1 Q;  2FAD A;  2K2Q A;  5CZD B;  2QA4 P;  2KOS A;  1VQP P;  2KOR A;  3CC7 P;  3CCU P;  3M1M A;  2MVU A;  1GXH A;  3G28 A;  4BPH A;  2JO0 A;  5EW5 E;  2DNW A;  2K93 A;  1VQ7 P;  4PXH B;  2WPT A;  2DGY A;  3LMO A;  2KG8 A;  1QRJ A;  2KOP A;  2XV6 A;  3CCJ P;  2AF8 A;  2Z46 A;  3P05 A;  4PH0 A;  5HGL A;  2FQ0 A;  2MR7 A;  2L4B A;  3DS2 A;  2MY5 A;  2ROQ A;  5BS2 A;  4XFZ A;  2VLO A;  3U43 A;  7CEI A;  3HYB A;  1K8A Q;  1AYI A;  3G4S P;  1GPJ A;  2PEJ A;  1A8O A;  3NY7 B;  1VQ9 P;  2M8N A;  2PEQ A;  1VQ6 P;  2FVF A;  2XZ1 C;  3CC2 P;  2GZF A;  5DCK A;  3GZL A;  1ACP A;  2FQ1 A;  2GZI A;  4U0D A;  4WYM A;  3CXC O;  2CWO A;  2AVA A;  1A43 A;  3B5I A;  2KOO A;  4DG9 A;  3CMA P;  1OR5 A;  3RG2 A;  2PEN A;  1FR2 A;  4U0A A;  2KGA A;  3CME P;  5KP8 B;  4CA3 A;  1EMV A;  4U0F A;  4QKO A;  1M1K Q;  3Q20 A;  5KP6 B;  1L0I A;  1W2B O;  3WBH A;  2N50 A;  2KW2 A;  5F2N A;  2JU1 A;  1Q7Y Q;  2PEM A;  2KGC A;  2KGD A;  1BAJ A;  2GDY A;  2PY8 A;  2JQ4 A;  3G1I A;  2CNR A;  2EFJ A;  1JJ2 O;  1RO0 A;  1L0H A;  1IMQ A;  1T8K A;  3G0V A;  2VLP A;  5BS1 A;  2EHS A;  2JAZ A;  3H4E A;  1VQ5 P;  2BHV A;  3H0D A;  4HKG A;  3CCS P;  1VQM P;  3GZM A;  4COC A;  2LTE A;  1M6N A;  4R0M A;  2FVE A;  1S72 P;  4XRQ A;  1M6E X;  2LIW A;  3G6E P;  2LOL A;  2LKI A;  1VQL P;  2FQ2 A;  4UHP B;  2N6Z A;  2LF4 A;  3CC4 P;  2GDW A;  1AF8 A;  2PNG A;  4NEO A;  1QVF O;  1HY8 A;  3DS4 A;  2QNW A;  2K92 A;  2L6E A;  4PH1 A;  1NJI Q;  2CGQ A;  4M0I A;  3DTJ A;  1VKU A;  2KG6 A;  1HQB A;  2KGE A;  1IUQ A;  2VLQ A;  1D1D A;  2XXM A;  4F37 A;  2VLN A;  3EJD A;  2NO8 A;  4U0C A;  2OTJ P;  3HZQ A;  1K30 A; 
#chains in the Genus database with same CATH homology
 1AYI A;  4QKO A;  1MZ8 A;  1GXH A;  2GZI A;  2GZG A;  2GZE A;  2VLQ A;  2JBG A;  2K0D X;  1BXI A;  1IMQ A;  5EW5 E;  2K5X A;  2VLP A;  4F37 A;  1IMP A;  1UJZ A;  1E0H A;  2JAZ A;  2VLN A;  2GYK A;  1GXG A;  2WPT A;  3GKL C;  2VLO A;  4UHP B;  3U43 A;  2NO8 A;  3GJN A;  1FR2 A;  7CEI A;  2JB0 A;  2GZJ A;  1CEI A;  1EMV A;  1ZNV A;  2ERH A;  2GZF A;  1UNK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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