4COCA

Hiv-1 capsid c-terminal domain mutant (y169l)
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
75
structure length
75
Chain Sequence
TSILDIRQGPKEPFRDYVDRFLKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Human immunodeficiency virus 1
publication title Cryo-Electron Microscopy of Tubular Arrays of HIV-1 Gag Resolves Structures Essential for Immature Virus Assembly.
pubmed doi rcsb
molecule keywords CAPSID PROTEIN P24
total genus 28
structure length 75
sequence length 75
chains with identical sequence B, C
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2014-01-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 4cocA00
4XFXA 2XXMA 4WYMA 3DS1A 3G0VA 3H4EA 2LF4A 4M0IA 1EOQA 1BAJA 2XT1A 3P05A 2M8PA 3DTJA 1A8OA 3DS0A 3G26A 4U0EA 2JYLA 4U0BA 4U0AA 4U0CA 3VRLC 3DS2A 2EIAA 4COCA 5JPAA 3H47A 4U0FA 1A43A 2BUOA 2KODA 3DS4A 3G1GA 3NTEA 3DS5A 5DCKA 3LRYA 1AUMA 1EIAA 2ONTA 3G1IA 3G28A 5HGLA 3DS3A 4PH1A 4XROA 4PH0A 2XV6A 3G21A 4XFZA 5HGOA 5HGNA 4QNBA 2JO0A 4XFYA 4XRQA 4COPA 2L6EA 4U0DA 5I4TG 5HGMA 1QRJA 3MGEA 4IPYA 2JYGA 3G29A 1E6JP 2M8NA 3DPHA 1D1DA 2M8LA
chains in the Genus database with same CATH superfamily
2FACA 1RO2A 2KR5A 2LIUA 1L0HA 4COCA 1UJZA 1NJIQ 3NTEA 2P9XA 1AUMA 2K2QA 1FR2A 2MY5A 2GZIA 2L6EA 1GXHA 1BXIA 3GZLA 2JB0A 5CZDB 3M1MA 2FQ1A 2VLOA 2OARA 4PXHB 2M8PA 2AFDA 1DV5A 2PEJA 4DG9A 5EJDA 2KG6A 1OR5A 1VQ4P 2LMLA 2K0DX 1JJ2O 4PWVB 2K93A 2N5IA 3G29A 5HV8A 1E0HA 1UNKA 2KORA 3CCUP 2QA4P 2PEKA 3CCMP 1VQOP 2MF4A 2L22A 3HZQA 2JQ4A 2PEOA 2QNWA 4R0MA 4F37A 2XV6A 1ZMBA 1Z6MA 2E1MA 1EMVA 2KOPA 3MGEA 1KC8Q 2K94A 2KOSA 3HYBA 4HKGA 2FHSC 4BPGA 3P05A 3DTJA 1A8OA 3VRLC 2EIAA 2GZGA 1IMQA 2MVUA 2N5HA 1YJ9P 3RG6C 4BPFA 3B5IA 2KGAA 2PENA 2EG5A 1Q82Q 1YJWP 5KP7B 2PNGA 1HY8A 4U0CA 2JU1A 2ROQA 5KP6B 2KW2A 3Q20A 2VLPA 3CMEP 2JGPA 1VQ7P 1N8RQ 2N6YA 3CCQP 2LOLA 1VQLP 4WYMA 1YI2P 1M6NA 2BUOA 3G4SP 2EHTA 1NQ4A 4H2XC 1T8KA 4NEOA 1VQ9P 2PY8A 3GZMA 1AYIA 1E6JP 4XFXA 2K0YA 2FVEA 2LPKA 1M74A 2AF8A 2X2BA 3DS4A 3G71P 2GYKA 2WPTA 3GJNA 1M90Q 2MR8A 3CC2P 3G21A 4MRTC 2FVFA 2KG8A 2CWOA 2DNWA 2L0QA 5I4TG 3CCEP 1VQPP 1QVFO 1L0IA 2LIWA 1EOQA 1ACPA 2N6ZA 3G26A 4H2YC 2EFJA 1Q81Q 2Z44A 3LRYA 3G28A 1K9MQ 4PH1A 3EJEA 5HGMA 2CG5B 1YHQP 3CCVP 1W2BO 2XXMA 4QKOA 4BPHA 3DS1A 3LMOA 2MD9A 1BAJA 3DS0A 2FQ2A 4U0AA 2CQ8A 2L4BA 3G1GA 2JAZA 3EJDA 2ONTA 3G1IA 4GR2A 2XZ1C 2PEMA 5F2KA 5BS1A 3NY7B 1VHNA 5KP8B 1K30A 3CCLP 4IZ6A 2GZJA 3DS2A 2CNRA 2K92A 1RNIA 1M1KQ 1RO0A 1GPJA 2AFEA 4IPYA 1VKUA 2QEXP 2PEIA 2M8LA 2XZ0D 2Z45A 4U0BA 5JPAA 2JYLA 2N98A 1A43A 3EJBA 2OTJP 3DS5A 1IMPA 2GDWA 5HGLA 3DS3A 3CD6P 2OTLP 2Z46A 2N50A 2AVAA 4H2WC 4XFZA 4GR6A 4CA3A 2CGQA 2FQ0A 3I56P 1KLPA 1VQ5P 2VSQA 1AF8A 2PEQA 1HQBA 1IUQA 3H47A 4U0FA 1YITP 2LKIA 1YJNP 1YIJP 4XROA 2GDYA 2EHSA 5BS2A 2JBGA 3RG2A 1M6EX 2JO0A 1K73Q 1KD1Q 2GZFA 3OW2O 3GKLC 2JYGA 3H4EA 2LF4A 2ERHA 2VLNA 3E2DA 1MZ8A 4UHPB 5F2NA 1ZNVA 4QNBA 1QRJA 2VLQA 2M8NA 2KGCA 1D1DA 2FAEA 4M0IA 2M5RA 2XT1A 1VQMP 1GXGA 2KODA 3I55P 2DGYA 1VQNP 3CC4P 1EIAA 1Q7YQ 4PH0A 2KGEA 3CXCO 1X3OA 1K8AQ 5HGNA 2KOOA 4XFYA 4XRQA 2GDXA 5HVCA 2KOQA 1S72P 3DPHA 1VQ6P 2JU2A 3H0DA 1VQ8P 1QVGO 3G0VA 2KGDA 5F2OA 1CEIA 2BHVA 4U0EA 2KG9A 2MVVA 7CEIA 5DCKA 2GZEA 1F80D 3U43A 3CCRP 3CC7P 2MR7A 2LTEA 3B4QA 3CCJP 2L9FA 5HGOA 1DNYA 4U0DA 2KWLA 3CMAP 3CCSP 5EW5E 2K0XA 1KQSO 2FADA 2LL8A 3G6EP 2NO8A 2K5XA 1Q86Q 3WBHA 3CE7A 4COPA 1VQKP 2FVAA 3CPWO
chains in the Genus database with same CATH topology
1RO2A 2EG5A 2XXMA 1Q82Q 3DS1A 3H4EA 2LF4A 1YJWP 1BAJA 3DS0A 4U0AA 4U0CA 4COCA 1NJIQ 3E2DA 3G1GA 3NTEA 2P9XA 1AUMA 2ONTA 3G1IA 4GR2A 5F2NA 2PEMA 3Q20A 5F2KA 5BS1A 4QNBA 3CMEP 1W2BO 2L6EA 1QRJA 1VQ7P 1N8RQ 1K30A 3CCLP 2M8NA 3M1MA 1D1DA 2OARA 3CCQP 4M0IA 1VQLP 2XT1A 4WYMA 1VQMP 2M8PA 1YI2P 1M6NA 3DS2A 2PEJA 2KODA 2BUOA 3G4SP 3I55P 2DGYA 1VQNP 3CC4P 1RNIA 1EIAA 1VQ4P 1Q7YQ 4PH0A 1M1KQ 1RO0A 3CXCO 1K8AQ 1VQ9P 5HGNA 4XFYA 4XRQA 1JJ2O 2PY8A 4IPYA 1S72P 3G29A 2QEXP 1E6JP 3DPHA 2PEIA 1VQ6P 3H0DA 2M8LA 4XFXA 1VQ8P 3CCUP 1QVGO 3G0VA 5F2OA 2Z45A 4U0BA 2BHVA 2QA4P 2PEKA 5JPAA 4U0EA 3CCMP 1M74A 2JYLA 3HZQA 1VQOP 2PEOA 1A43A 3DS4A 3G71P 5DCKA 2OTJP 3DS5A 3CCRP 3CC7P 5HGLA 3DS3A 1M90Q 3CD6P 2Z46A 2OTLP 2XV6A 3CC2P 3G21A 4XFZA 3CCJP 4GR6A 5HGOA 1ZMBA 2E1MA 2CWOA 4U0DA 5I4TG 3CCEP 3MGEA 1KC8Q 3CMAP 3CCSP 3I56P 1VQPP 1KQSO 1QVFO 1VQ5P 3HYBA 1EOQA 3P05A 3DTJA 1A8OA 3G26A 2PEQA 2EFJA 3VRLC 3G6EP 2EIAA 1Q81Q 1IUQA 3H47A 4U0FA 1YITP 2Z44A 1YJ9P 3LRYA 1YJNP 3RG6C 1Q86Q 3G28A 1YIJP 1K9MQ 4PH1A 4XROA 5BS2A 3WBHA 1M6EX 2JO0A 4COPA 1K73Q 1KD1Q 1VQKP 3B5IA 5HGMA 3OW2O 2JYGA 2PENA 1YHQP 3CPWO 3CCVP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XFX A;  2XXM A;  4WYM A;  3DS1 A;  3G0V A;  3H4E A;  2LF4 A;  4M0I A;  1EOQ A;  1BAJ A;  2XT1 A;  3P05 A;  2M8P A;  3DTJ A;  1A8O A;  3DS0 A;  3G26 A;  4U0E A;  2JYL A;  4U0B A;  4U0A A;  4U0C A;  3VRL C;  3DS2 A;  2EIA A;  4COC A;  5JPA A;  3H47 A;  4U0F A;  1A43 A;  2BUO A;  2KOD A;  3DS4 A;  3G1G A;  3NTE A;  3DS5 A;  5DCK A;  3LRY A;  1AUM A;  1EIA A;  2ONT A;  3G1I A;  3G28 A;  5HGL A;  3DS3 A;  4PH1 A;  4XRO A;  4PH0 A;  2XV6 A;  3G21 A;  4XFZ A;  5HGO A;  5HGN A;  4QNB A;  2JO0 A;  4XFY A;  4XRQ A;  4COP A;  2L6E A;  4U0D A;  5I4T G;  5HGM A;  1QRJ A;  3MGE A;  4IPY A;  2JYG A;  3G29 A;  1E6J P;  2M8N A;  3DPH A;  1D1D A;  2M8L A; 
#chains in the Genus database with same CATH topology
 2FAC A;  1RO2 A;  2KR5 A;  2LIU A;  1L0H A;  4COC A;  1UJZ A;  1NJI Q;  3NTE A;  2P9X A;  1AUM A;  2K2Q A;  1FR2 A;  2MY5 A;  2GZI A;  2L6E A;  1GXH A;  1BXI A;  3GZL A;  2JB0 A;  5CZD B;  3M1M A;  2FQ1 A;  2VLO A;  2OAR A;  4PXH B;  2M8P A;  2AFD A;  1DV5 A;  2PEJ A;  4DG9 A;  5EJD A;  2KG6 A;  1OR5 A;  1VQ4 P;  2LML A;  2K0D X;  1JJ2 O;  4PWV B;  2K93 A;  2N5I A;  3G29 A;  5HV8 A;  1E0H A;  1UNK A;  2KOR A;  3CCU P;  2QA4 P;  2PEK A;  3CCM P;  1VQO P;  2MF4 A;  2L22 A;  3HZQ A;  2JQ4 A;  2PEO A;  2QNW A;  4R0M A;  4F37 A;  2XV6 A;  1ZMB A;  1Z6M A;  2E1M A;  1EMV A;  2KOP A;  3MGE A;  1KC8 Q;  2K94 A;  2KOS A;  3HYB A;  4HKG A;  2FHS C;  4BPG A;  3P05 A;  3DTJ A;  1A8O A;  3VRL C;  2EIA A;  2GZG A;  1IMQ A;  2MVU A;  2N5H A;  1YJ9 P;  3RG6 C;  4BPF A;  3B5I A;  2KGA A;  2PEN A;  2EG5 A;  1Q82 Q;  1YJW P;  5KP7 B;  2PNG A;  1HY8 A;  4U0C A;  2JU1 A;  2ROQ A;  5KP6 B;  2KW2 A;  3Q20 A;  2VLP A;  3CME P;  2JGP A;  1VQ7 P;  1N8R Q;  2N6Y A;  3CCQ P;  2LOL A;  1VQL P;  4WYM A;  1YI2 P;  1M6N A;  2BUO A;  3G4S P;  2EHT A;  1NQ4 A;  4H2X C;  1T8K A;  4NEO A;  1VQ9 P;  2PY8 A;  3GZM A;  1AYI A;  1E6J P;  4XFX A;  2K0Y A;  2FVE A;  2LPK A;  1M74 A;  2AF8 A;  2X2B A;  3DS4 A;  3G71 P;  2GYK A;  2WPT A;  3GJN A;  1M90 Q;  2MR8 A;  3CC2 P;  3G21 A;  4MRT C;  2FVF A;  2KG8 A;  2CWO A;  2DNW A;  2L0Q A;  5I4T G;  3CCE P;  1VQP P;  1QVF O;  1L0I A;  2LIW A;  1EOQ A;  1ACP A;  2N6Z A;  3G26 A;  4H2Y C;  2EFJ A;  1Q81 Q;  2Z44 A;  3LRY A;  3G28 A;  1K9M Q;  4PH1 A;  3EJE A;  5HGM A;  2CG5 B;  1YHQ P;  3CCV P;  1W2B O;  2XXM A;  4QKO A;  4BPH A;  3DS1 A;  3LMO A;  2MD9 A;  1BAJ A;  3DS0 A;  2FQ2 A;  4U0A A;  2CQ8 A;  2L4B A;  3G1G A;  2JAZ A;  3EJD A;  2ONT A;  3G1I A;  4GR2 A;  2XZ1 C;  2PEM A;  5F2K A;  5BS1 A;  3NY7 B;  1VHN A;  5KP8 B;  1K30 A;  3CCL P;  4IZ6 A;  2GZJ A;  3DS2 A;  2CNR A;  2K92 A;  1RNI A;  1M1K Q;  1RO0 A;  1GPJ A;  2AFE A;  4IPY A;  1VKU A;  2QEX P;  2PEI A;  2M8L A;  2XZ0 D;  2Z45 A;  4U0B A;  5JPA A;  2JYL A;  2N98 A;  1A43 A;  3EJB A;  2OTJ P;  3DS5 A;  1IMP A;  2GDW A;  5HGL A;  3DS3 A;  3CD6 P;  2OTL P;  2Z46 A;  2N50 A;  2AVA A;  4H2W C;  4XFZ A;  4GR6 A;  4CA3 A;  2CGQ A;  2FQ0 A;  3I56 P;  1KLP A;  1VQ5 P;  2VSQ A;  1AF8 A;  2PEQ A;  1HQB A;  1IUQ A;  3H47 A;  4U0F A;  1YIT P;  2LKI A;  1YJN P;  1YIJ P;  4XRO A;  2GDY A;  2EHS A;  5BS2 A;  2JBG A;  3RG2 A;  1M6E X;  2JO0 A;  1K73 Q;  1KD1 Q;  2GZF A;  3OW2 O;  3GKL C;  2JYG A;  3H4E A;  2LF4 A;  2ERH A;  2VLN A;  3E2D A;  1MZ8 A;  4UHP B;  5F2N A;  1ZNV A;  4QNB A;  1QRJ A;  2VLQ A;  2M8N A;  2KGC A;  1D1D A;  2FAE A;  4M0I A;  2M5R A;  2XT1 A;  1VQM P;  1GXG A;  2KOD A;  3I55 P;  2DGY A;  1VQN P;  3CC4 P;  1EIA A;  1Q7Y Q;  4PH0 A;  2KGE A;  3CXC O;  1X3O A;  1K8A Q;  5HGN A;  2KOO A;  4XFY A;  4XRQ A;  2GDX A;  5HVC A;  2KOQ A;  1S72 P;  3DPH A;  1VQ6 P;  2JU2 A;  3H0D A;  1VQ8 P;  1QVG O;  3G0V A;  2KGD A;  5F2O A;  1CEI A;  2BHV A;  4U0E A;  2KG9 A;  2MVV A;  7CEI A;  5DCK A;  2GZE A;  1F80 D;  3U43 A;  3CCR P;  3CC7 P;  2MR7 A;  2LTE A;  3B4Q A;  3CCJ P;  2L9F A;  5HGO A;  1DNY A;  4U0D A;  2KWL A;  3CMA P;  3CCS P;  5EW5 E;  2K0X A;  1KQS O;  2FAD A;  2LL8 A;  3G6E P;  2NO8 A;  2K5X A;  1Q86 Q;  3WBH A;  3CE7 A;  4COP A;  1VQK P;  2FVA A;  3CPW O; 
#chains in the Genus database with same CATH homology
 1RO2 A;  2EG5 A;  2XXM A;  1Q82 Q;  3DS1 A;  3H4E A;  2LF4 A;  1YJW P;  1BAJ A;  3DS0 A;  4U0A A;  4U0C A;  4COC A;  1NJI Q;  3E2D A;  3G1G A;  3NTE A;  2P9X A;  1AUM A;  2ONT A;  3G1I A;  4GR2 A;  5F2N A;  2PEM A;  3Q20 A;  5F2K A;  5BS1 A;  4QNB A;  3CME P;  1W2B O;  2L6E A;  1QRJ A;  1VQ7 P;  1N8R Q;  1K30 A;  3CCL P;  2M8N A;  3M1M A;  1D1D A;  2OAR A;  3CCQ P;  4M0I A;  1VQL P;  2XT1 A;  4WYM A;  1VQM P;  2M8P A;  1YI2 P;  1M6N A;  3DS2 A;  2PEJ A;  2KOD A;  2BUO A;  3G4S P;  3I55 P;  2DGY A;  1VQN P;  3CC4 P;  1RNI A;  1EIA A;  1VQ4 P;  1Q7Y Q;  4PH0 A;  1M1K Q;  1RO0 A;  3CXC O;  1K8A Q;  1VQ9 P;  5HGN A;  4XFY A;  4XRQ A;  1JJ2 O;  2PY8 A;  4IPY A;  1S72 P;  3G29 A;  2QEX P;  1E6J P;  3DPH A;  2PEI A;  1VQ6 P;  3H0D A;  2M8L A;  4XFX A;  1VQ8 P;  3CCU P;  1QVG O;  3G0V A;  5F2O A;  2Z45 A;  4U0B A;  2BHV A;  2QA4 P;  2PEK A;  5JPA A;  4U0E A;  3CCM P;  1M74 A;  2JYL A;  3HZQ A;  1VQO P;  2PEO A;  1A43 A;  3DS4 A;  3G71 P;  5DCK A;  2OTJ P;  3DS5 A;  3CCR P;  3CC7 P;  5HGL A;  3DS3 A;  1M90 Q;  3CD6 P;  2Z46 A;  2OTL P;  2XV6 A;  3CC2 P;  3G21 A;  4XFZ A;  3CCJ P;  4GR6 A;  5HGO A;  1ZMB A;  2E1M A;  2CWO A;  4U0D A;  5I4T G;  3CCE P;  3MGE A;  1KC8 Q;  3CMA P;  3CCS P;  3I56 P;  1VQP P;  1KQS O;  1QVF O;  1VQ5 P;  3HYB A;  1EOQ A;  3P05 A;  3DTJ A;  1A8O A;  3G26 A;  2PEQ A;  2EFJ A;  3VRL C;  3G6E P;  2EIA A;  1Q81 Q;  1IUQ A;  3H47 A;  4U0F A;  1YIT P;  2Z44 A;  1YJ9 P;  3LRY A;  1YJN P;  3RG6 C;  1Q86 Q;  3G28 A;  1YIJ P;  1K9M Q;  4PH1 A;  4XRO A;  5BS2 A;  3WBH A;  1M6E X;  2JO0 A;  4COP A;  1K73 Q;  1KD1 Q;  1VQK P;  3B5I A;  5HGM A;  3OW2 O;  2JYG A;  2PEN A;  1YHQ P;  3CPW O;  3CCV P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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