4BPHA

High resolution crystal structure of bacillus subtilis dltc
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
85
structure length
85
Chain Sequence
MDFKQEVLDVLAEVCQDDIVKENPDIEIFEEGLLDSFGTVELLLAIENRFDILVPITEFDRDVWNTPNNIVNQLSELKRSHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
source organism Bacillus subtilis
publication title High-Resolution Structures of the D-Alanyl Carrier Protein (Dcp) Dltc from Bacillus Subtilis Reveal Equivalent Conformations of Apo- and Holo-Forms
pubmed doi rcsb
molecule keywords D-ALANINE--POLY(PHOSPHORIBITOL) LIGASE SUBUNIT 2
total genus 23
structure length 85
sequence length 85
ec nomenclature ec 6.1.1.13: D-alanine--poly(phosphoribitol) ligase.
pdb deposition date 2013-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 4bphA00
2AF8A 2CGQA 2JU1A 2AFEA 2MVUA 2N5HA 4BPGA 2LKIA 2FACA 4H2WC 2MF4A 2CQ8A 2KGAA 1HY8A 2JQ4A 2KOQA 4BPHA 5HVCA 3NY7B 2LIWA 1X3OA 1L0IA 2GDXA 2L0QA 4PWVB 2K0YA 2KGCA 2L22A 2CNRA 2LPKA 2KORA 5CZDB 2LIUA 4BPFA 2FADA 2VSQA 2KW2A 4H2XC 2KOOA 3EJEA 5KP8B 2AVAA 2K0XA 4DG9A 2GDWA 3GZLA 2CG5B 2LOLA 2GDYA 2EHSA 2XZ1C 2KG8A 2MVVA 1L0HA 2FVEA 1HQBA 2KGDA 2FQ0A 2KG9A 5KP6B 2LTEA 3CE7A 2N6YA 3GZMA 4PXHB 3EJBA 2L4BA 2PNGA 2FHSC 2KWLA 2MR7A 5EJDA 1F80D 3LMOA 2MY5A 2MR8A 2AFDA 4MRTC 4IZ6A 2KR5A 2QNWA 2K92A 1DV5A 5KP7B 1NQ4A 4H2YC 2DNWA 4NEOA 5HV8A 1T8KA 2K94A 1VKUA 3RG2A 2FVFA 2LL8A 1KLPA 2M5RA 2KG6A 2N98A 2FQ1A 2KOSA 2FQ2A 2MD9A 2FAEA 2KOPA 1ACPA 4CA3A 1AF8A 3EJDA 4HKGA 2LMLA 2XZ0D 2KGEA 4R0MA 2N6ZA 2JGPA 2EHTA 2FVAA 2X2BA 2K2QA 2N5IA 2N50A 1OR5A 2ROQA 2L9FA 2JU2A 1DNYA 2K93A
chains in the Genus database with same CATH superfamily
3G6EP 4PH0A 2MVUA 1VQLP 2LKIA 4H2WC 1QVFO 2MF4A 2KODA 3I56P 4BPHA 5HGOA 1X3OA 4PWVB 2KGCA 2KORA 2GZEA 4BPFA 1VQ4P 4U0AA 3DS4A 1K9MQ 2CWOA 2KW2A 4H2XC 5F2NA 4U0EA 5HGMA 2EIAA 5KP8B 2GZGA 3CC2P 1JJ2O 3CC4P 4M0IA 1K73Q 2EHSA 2XV6A 2MVVA 1A43A 5KP6B 2XT1A 3GZMA 1YITP 4PXHB 2GZJA 2PNGA 1YJ9P 1UNKA 3CXCO 1VQKP 1YJNP 1F80D 3B5IA 2AFDA 4IZ6A 5DCKA 1VQMP 1DV5A 3G0VA 1VQNP 1AYIA 2DNWA 1W2BO 4GR2A 1T8KA 1VQ8P 2PEJA 2XXMA 2M5RA 3I55P 2KOSA 2JB0A 5BS1A 4GR6A 1KD1Q 3CPWO 3CCVP 2KOPA 1QRJA 2VLNA 4CA3A 4HKGA 2LMLA 2XZ0D 2KGEA 2N6ZA 2M8NA 2K2QA 2JU2A 2QA4P 2K93A 1IUQA 2AF8A 2PENA 1M6NA 3G29A 2CQ8A 3G1GA 4XROA 3NY7B 2LIWA 2E1MA 3B4QA 1Q81Q 2CNRA 5CZDB 3CC7P 1IMPA 3G26A 2AVAA 2QEXP 2GDWA 3GJNA 3GZLA 2GYKA 4UHPB 4WYMA 3CMAP 2GDYA 3DS1A 3U43A 1BAJA 1HQBA 1Q86Q 3DTJA 3G71P 2JAZA 5HGNA 2PEMA 2FHSC 2ONTA 1IMQA 1KC8Q 4XFZA 5EJDA 2K5XA 5KP7B 5BS2A 1M1KQ 3HZQA 1VKUA 2DGYA 3RG2A 2FVFA 2LL8A 1KLPA 2KG6A 2FQ1A 1Q82Q 2LF4A 2FQ2A 3H47A 1GXHA 1ACPA 3CCEP 1S72P 3EJDA 5HGLA 1M74A 2OTLP 2JGPA 3OW2O 1ZNVA 2N5IA 2N50A 4PH1A 2BUOA 2PEKA 2JYGA 1AUMA 5F2KA 3Q20A 2VLPA 4U0FA 3NTEA 4BPGA 4U0DA 2FACA 1E6JP 3M1MA 4QKOA 2JQ4A 5JPAA 2JBGA 1BXIA 2JO0A 2GDXA 1ZMBA 3DPHA 2WPTA 2Z46A 1KQSO 2VSQA 1VQ9P 2KOOA 1K8AQ 2K0XA 4DG9A 1VQ7P 2CG5B 2LOLA 5EW5E 4XFXA 2KG8A 5F2OA 2K0DX 2FVEA 2KGDA 2KG9A 2LTEA 1YHQP 2N6YA 4F37A 1UJZA 2GZIA 3MGEA 3E2DA 3GKLC 2L4BA 2P9XA 2MR7A 2EFJA 2MY5A 2VLOA 2MR8A 4MRTC 2KR5A 4IPYA 3G21A 1GPJA 4U0CA 3CMEP 4H2YC 1N8RQ 2EG5A 3CCUP 1VQOP 3G4SP 1M90Q 5HV8A 2M8LA 1NJIQ 2Z44A 2N98A 1A8OA 1RO0A 3CD6P 3H0DA 1QVGO 4XRQA 2MD9A 2BHVA 1D1DA 1Q7YQ 4R0MA 2EHTA 4U0BA 1VQ6P 2X2BA 1YI2P 4COPA 2ROQA 1DNYA 3CCJP 2N5HA 2CGQA 2JU1A 2AFEA 3CCQP 1YJWP 2KGAA 1HY8A 3DS3A 3DS5A 2KOQA 5HVCA 1RO2A 1L0IA 2L0QA 2PEIA 2K0YA 7CEIA 2L22A 2LPKA 2GZFA 2PEOA 2LIUA 2OARA 2FADA 1CEIA 1VQPP 3EJEA 3H4EA 1RNIA 3HYBA 2ERHA 2XZ1C 1EIAA 3CCSP 1L0HA 2JYLA 2FQ0A 3CE7A 3G1IA 3P05A 2PY8A 5I4TG 4XFYA 1Z6MA 2NO8A 1M6EX 3EJBA 1VHNA 2KWLA 3LRYA 3CCRP 3LMOA 1VQ5P 3G28A 2QNWA 3CCLP 2K92A 1NQ4A 2VLQA 3RG6C 2PEQA 4NEOA 2K94A 1GXGA 1MZ8A 3VRLC 2Z45A 4QNBA 1EMVA 2FAEA 1EOQA 2OTJP 1AF8A 1K30A 1FR2A 3DS2A 3DS0A 2FVAA 2L6EA 1E0HA 3CCMP 1OR5A 2L9FA 3WBHA 2M8PA 4COCA 1YIJP
chains in the Genus database with same CATH topology
2AF8A 2CGQA 2JU1A 2AFEA 2MVUA 2N5HA 4BPGA 2LKIA 2FACA 4H2WC 2MF4A 2CQ8A 2KGAA 1HY8A 2JQ4A 2KOQA 4BPHA 5HVCA 3NY7B 2LIWA 1X3OA 1L0IA 2GDXA 2L0QA 4PWVB 2K0YA 2KGCA 2L22A 2CNRA 2LPKA 2KORA 5CZDB 2LIUA 4BPFA 2FADA 2VSQA 2KW2A 4H2XC 2KOOA 3EJEA 5KP8B 2AVAA 2K0XA 4DG9A 2GDWA 3GZLA 2CG5B 2LOLA 2GDYA 2EHSA 2XZ1C 2KG8A 2MVVA 1L0HA 2FVEA 1HQBA 2KGDA 2FQ0A 2KG9A 5KP6B 2LTEA 3CE7A 2N6YA 3GZMA 4PXHB 3EJBA 2L4BA 2PNGA 2FHSC 2KWLA 2MR7A 5EJDA 1F80D 3LMOA 2MY5A 2MR8A 2AFDA 4MRTC 4IZ6A 2KR5A 2QNWA 2K92A 1DV5A 5KP7B 1NQ4A 4H2YC 2DNWA 4NEOA 5HV8A 1T8KA 2K94A 1VKUA 3RG2A 2FVFA 2LL8A 1KLPA 2M5RA 2KG6A 2N98A 2FQ1A 2KOSA 2FQ2A 2MD9A 2FAEA 2KOPA 1ACPA 4CA3A 1AF8A 3EJDA 4HKGA 2LMLA 2XZ0D 2KGEA 4R0MA 2N6ZA 2JGPA 2EHTA 2FVAA 2X2BA 2K2QA 2N5IA 2N50A 1OR5A 2ROQA 2L9FA 2JU2A 1DNYA 2K93A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AF8 A;  2CGQ A;  2JU1 A;  2AFE A;  2MVU A;  2N5H A;  4BPG A;  2LKI A;  2FAC A;  4H2W C;  2MF4 A;  2CQ8 A;  2KGA A;  1HY8 A;  2JQ4 A;  2KOQ A;  4BPH A;  5HVC A;  3NY7 B;  2LIW A;  1X3O A;  1L0I A;  2GDX A;  2L0Q A;  4PWV B;  2K0Y A;  2KGC A;  2L22 A;  2CNR A;  2LPK A;  2KOR A;  5CZD B;  2LIU A;  4BPF A;  2FAD A;  2VSQ A;  2KW2 A;  4H2X C;  2KOO A;  3EJE A;  5KP8 B;  2AVA A;  2K0X A;  4DG9 A;  2GDW A;  3GZL A;  2CG5 B;  2LOL A;  2GDY A;  2EHS A;  2XZ1 C;  2KG8 A;  2MVV A;  1L0H A;  2FVE A;  1HQB A;  2KGD A;  2FQ0 A;  2KG9 A;  5KP6 B;  2LTE A;  3CE7 A;  2N6Y A;  3GZM A;  4PXH B;  3EJB A;  2L4B A;  2PNG A;  2FHS C;  2KWL A;  2MR7 A;  5EJD A;  1F80 D;  3LMO A;  2MY5 A;  2MR8 A;  2AFD A;  4MRT C;  4IZ6 A;  2KR5 A;  2QNW A;  2K92 A;  1DV5 A;  5KP7 B;  1NQ4 A;  4H2Y C;  2DNW A;  4NEO A;  5HV8 A;  1T8K A;  2K94 A;  1VKU A;  3RG2 A;  2FVF A;  2LL8 A;  1KLP A;  2M5R A;  2KG6 A;  2N98 A;  2FQ1 A;  2KOS A;  2FQ2 A;  2MD9 A;  2FAE A;  2KOP A;  1ACP A;  4CA3 A;  1AF8 A;  3EJD A;  4HKG A;  2LML A;  2XZ0 D;  2KGE A;  4R0M A;  2N6Z A;  2JGP A;  2EHT A;  2FVA A;  2X2B A;  2K2Q A;  2N5I A;  2N50 A;  1OR5 A;  2ROQ A;  2L9F A;  2JU2 A;  1DNY A;  2K93 A; 
#chains in the Genus database with same CATH topology
 3G6E P;  4PH0 A;  2MVU A;  1VQL P;  2LKI A;  4H2W C;  1QVF O;  2MF4 A;  2KOD A;  3I56 P;  4BPH A;  5HGO A;  1X3O A;  4PWV B;  2KGC A;  2KOR A;  2GZE A;  4BPF A;  1VQ4 P;  4U0A A;  3DS4 A;  1K9M Q;  2CWO A;  2KW2 A;  4H2X C;  5F2N A;  4U0E A;  5HGM A;  2EIA A;  5KP8 B;  2GZG A;  3CC2 P;  1JJ2 O;  3CC4 P;  4M0I A;  1K73 Q;  2EHS A;  2XV6 A;  2MVV A;  1A43 A;  5KP6 B;  2XT1 A;  3GZM A;  1YIT P;  4PXH B;  2GZJ A;  2PNG A;  1YJ9 P;  1UNK A;  3CXC O;  1VQK P;  1YJN P;  1F80 D;  3B5I A;  2AFD A;  4IZ6 A;  5DCK A;  1VQM P;  1DV5 A;  3G0V A;  1VQN P;  1AYI A;  2DNW A;  1W2B O;  4GR2 A;  1T8K A;  1VQ8 P;  2PEJ A;  2XXM A;  2M5R A;  3I55 P;  2KOS A;  2JB0 A;  5BS1 A;  4GR6 A;  1KD1 Q;  3CPW O;  3CCV P;  2KOP A;  1QRJ A;  2VLN A;  4CA3 A;  4HKG A;  2LML A;  2XZ0 D;  2KGE A;  2N6Z A;  2M8N A;  2K2Q A;  2JU2 A;  2QA4 P;  2K93 A;  1IUQ A;  2AF8 A;  2PEN A;  1M6N A;  3G29 A;  2CQ8 A;  3G1G A;  4XRO A;  3NY7 B;  2LIW A;  2E1M A;  3B4Q A;  1Q81 Q;  2CNR A;  5CZD B;  3CC7 P;  1IMP A;  3G26 A;  2AVA A;  2QEX P;  2GDW A;  3GJN A;  3GZL A;  2GYK A;  4UHP B;  4WYM A;  3CMA P;  2GDY A;  3DS1 A;  3U43 A;  1BAJ A;  1HQB A;  1Q86 Q;  3DTJ A;  3G71 P;  2JAZ A;  5HGN A;  2PEM A;  2FHS C;  2ONT A;  1IMQ A;  1KC8 Q;  4XFZ A;  5EJD A;  2K5X A;  5KP7 B;  5BS2 A;  1M1K Q;  3HZQ A;  1VKU A;  2DGY A;  3RG2 A;  2FVF A;  2LL8 A;  1KLP A;  2KG6 A;  2FQ1 A;  1Q82 Q;  2LF4 A;  2FQ2 A;  3H47 A;  1GXH A;  1ACP A;  3CCE P;  1S72 P;  3EJD A;  5HGL A;  1M74 A;  2OTL P;  2JGP A;  3OW2 O;  1ZNV A;  2N5I A;  2N50 A;  4PH1 A;  2BUO A;  2PEK A;  2JYG A;  1AUM A;  5F2K A;  3Q20 A;  2VLP A;  4U0F A;  3NTE A;  4BPG A;  4U0D A;  2FAC A;  1E6J P;  3M1M A;  4QKO A;  2JQ4 A;  5JPA A;  2JBG A;  1BXI A;  2JO0 A;  2GDX A;  1ZMB A;  3DPH A;  2WPT A;  2Z46 A;  1KQS O;  2VSQ A;  1VQ9 P;  2KOO A;  1K8A Q;  2K0X A;  4DG9 A;  1VQ7 P;  2CG5 B;  2LOL A;  5EW5 E;  4XFX A;  2KG8 A;  5F2O A;  2K0D X;  2FVE A;  2KGD A;  2KG9 A;  2LTE A;  1YHQ P;  2N6Y A;  4F37 A;  1UJZ A;  2GZI A;  3MGE A;  3E2D A;  3GKL C;  2L4B A;  2P9X A;  2MR7 A;  2EFJ A;  2MY5 A;  2VLO A;  2MR8 A;  4MRT C;  2KR5 A;  4IPY A;  3G21 A;  1GPJ A;  4U0C A;  3CME P;  4H2Y C;  1N8R Q;  2EG5 A;  3CCU P;  1VQO P;  3G4S P;  1M90 Q;  5HV8 A;  2M8L A;  1NJI Q;  2Z44 A;  2N98 A;  1A8O A;  1RO0 A;  3CD6 P;  3H0D A;  1QVG O;  4XRQ A;  2MD9 A;  2BHV A;  1D1D A;  1Q7Y Q;  4R0M A;  2EHT A;  4U0B A;  1VQ6 P;  2X2B A;  1YI2 P;  4COP A;  2ROQ A;  1DNY A;  3CCJ P;  2N5H A;  2CGQ A;  2JU1 A;  2AFE A;  3CCQ P;  1YJW P;  2KGA A;  1HY8 A;  3DS3 A;  3DS5 A;  2KOQ A;  5HVC A;  1RO2 A;  1L0I A;  2L0Q A;  2PEI A;  2K0Y A;  7CEI A;  2L22 A;  2LPK A;  2GZF A;  2PEO A;  2LIU A;  2OAR A;  2FAD A;  1CEI A;  1VQP P;  3EJE A;  3H4E A;  1RNI A;  3HYB A;  2ERH A;  2XZ1 C;  1EIA A;  3CCS P;  1L0H A;  2JYL A;  2FQ0 A;  3CE7 A;  3G1I A;  3P05 A;  2PY8 A;  5I4T G;  4XFY A;  1Z6M A;  2NO8 A;  1M6E X;  3EJB A;  1VHN A;  2KWL A;  3LRY A;  3CCR P;  3LMO A;  1VQ5 P;  3G28 A;  2QNW A;  3CCL P;  2K92 A;  1NQ4 A;  2VLQ A;  3RG6 C;  2PEQ A;  4NEO A;  2K94 A;  1GXG A;  1MZ8 A;  3VRL C;  2Z45 A;  4QNB A;  1EMV A;  2FAE A;  1EOQ A;  2OTJ P;  1AF8 A;  1K30 A;  1FR2 A;  3DS2 A;  3DS0 A;  2FVA A;  2L6E A;  1E0H A;  3CCM P;  1OR5 A;  2L9F A;  3WBH A;  2M8P A;  4COC A;  1YIJ P; 
#chains in the Genus database with same CATH homology
 2AF8 A;  2CGQ A;  2JU1 A;  2AFE A;  2MVU A;  2N5H A;  4BPG A;  2LKI A;  2FAC A;  4H2W C;  2MF4 A;  2CQ8 A;  2KGA A;  1HY8 A;  2JQ4 A;  2KOQ A;  4BPH A;  5HVC A;  3NY7 B;  2LIW A;  1X3O A;  1L0I A;  2GDX A;  2L0Q A;  4PWV B;  2K0Y A;  2KGC A;  2L22 A;  2CNR A;  2LPK A;  2KOR A;  5CZD B;  2LIU A;  4BPF A;  2FAD A;  2VSQ A;  2KW2 A;  4H2X C;  2KOO A;  3EJE A;  5KP8 B;  2AVA A;  2K0X A;  4DG9 A;  2GDW A;  3GZL A;  2CG5 B;  2LOL A;  2GDY A;  2EHS A;  2XZ1 C;  2KG8 A;  2MVV A;  1L0H A;  2FVE A;  1HQB A;  2KGD A;  2FQ0 A;  2KG9 A;  5KP6 B;  2LTE A;  3CE7 A;  2N6Y A;  3GZM A;  4PXH B;  3EJB A;  2L4B A;  2PNG A;  2FHS C;  2KWL A;  2MR7 A;  5EJD A;  1F80 D;  3LMO A;  2MY5 A;  2MR8 A;  2AFD A;  4MRT C;  4IZ6 A;  2KR5 A;  2QNW A;  2K92 A;  1DV5 A;  5KP7 B;  1NQ4 A;  4H2Y C;  2DNW A;  4NEO A;  5HV8 A;  1T8K A;  2K94 A;  1VKU A;  3RG2 A;  2FVF A;  2LL8 A;  1KLP A;  2M5R A;  2KG6 A;  2N98 A;  2FQ1 A;  2KOS A;  2FQ2 A;  2MD9 A;  2FAE A;  2KOP A;  1ACP A;  4CA3 A;  1AF8 A;  3EJD A;  4HKG A;  2LML A;  2XZ0 D;  2KGE A;  4R0M A;  2N6Z A;  2JGP A;  2EHT A;  2FVA A;  2X2B A;  2K2Q A;  2N5I A;  2N50 A;  1OR5 A;  2ROQ A;  2L9F A;  2JU2 A;  1DNY A;  2K93 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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