5KP6B

Crystal structure of the curacin biosynthetic pathway hmg synthase in complex with apo donor-acp
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
78
structure length
78
Chain Sequence
MSKEQVLKIIKKYTREIAPELEDSPLEPTDSLKKLGIDSVNRAEIIMMVMEDLSLNIPRIELAGAKNIGELADLFAAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords CurD
publication title Anatomy of the beta-branching enzyme of polyketide biosynthesis and its interaction with an acyl-ACP substrate.
pubmed doi rcsb
source organism Moorea producens 3l
molecule tags Transferase
total genus 27
structure length 78
sequence length 78
ec nomenclature
pdb deposition date 2016-07-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 5kp6B00
2AFDA 2LKIA 5HV8A 2FQ0A 2CG5B 2LIUA 2K0YA 2N5IA 2GDWA 4PWVB 2L0QA 1NQ4A 2KOQA 5EJDA 2K2QA 2K92A 2XZ1C 2KORA 2JQ4A 2GDXA 1DV5A 4BPHA 2JU1A 5HVCA 2FVFA 2K93A 2FAEA 2KGEA 4H2WC 2FQ1A 1HY8A 2EHTA 2KW2A 1VKUA 2MVUA 2KG6A 2XZ0D 2LOLA 1AF8A 2JU2A 2L4BA 4PXHB 2KR5A 4MRTC 3EJDA 3NY7B 2LMLA 2FVAA 2LIWA 2KGAA 1L0HA 2AVAA 4H2XC 1DNYA 1T8KA 2KGDA 5KP7B 1X3OA 2FACA 1L0IA 3EJBA 2K94A 2EHSA 4DG9A 2N98A 2QNWA 1HQBA 2VSQA 3RG2A 2MR7A 2LPKA 5KP8B 2GDYA 2M5RA 4BPGA 2PNGA 5CZDB 2L22A 2MY5A 4BPFA 2DNWA 2K0XA 2N6ZA 4H2YC 2KWLA 4CA3A 2FHSC 2FVEA 2KOPA 4HKGA 2KOOA 3GZMA 3GZLA 2FQ2A 3LMOA 2MF4A 2N50A 2AF8A 2LTEA 3CE7A 3EJEA 2JGPA 2LL8A 2KG9A 2MR8A 2KG8A 2X2BA 1F80D 2MVVA 2AFEA 1OR5A 2N5HA 2MD9A 2FADA 4R0MA 2ROQA 2CQ8A 2L9FA 5KP6B 2KGCA 4IZ6A 2KOSA 4NEOA 2CGQA 1ACPA 1KLPA 2CNRA 2N6YA
chains in the Genus database with same CATH superfamily
2AFDA 2EFJA 1RO2A 2Z45A 4QKOA 3DS3A 2LKIA 3P05A 1Q86Q 3G29A 5HV8A 3CC2P 3U43A 1N8RQ 1GXGA 4PWVB 3Q20A 1NQ4A 5EJDA 1M6NA 3HYBA 3DS2A 1AYIA 1VQMP 1KD1Q 2GDXA 2OTJP 1M90Q 2M8PA 4BPHA 1UJZA 3CCSP 4H2WC 3CCVP 1QVFO 1HY8A 2EHTA 2KW2A 1VKUA 1EOQA 3H47A 1AF8A 2JU2A 4PXHB 4COPA 2LF4A 3NY7B 3CCLP 2FVAA 4UHPB 2WPTA 1T8KA 2PEIA 1EMVA 1A43A 2L6EA 2EHSA 4DG9A 3HZQA 2QNWA 2LPKA 4U0BA 2M5RA 5CZDB 2L22A 2DNWA 3G4SP 2KWLA 1YJ9P 2FHSC 3CMAP 2FVEA 2JB0A 3GZMA 3GZLA 1K73Q 1K8AQ 2N50A 3CCQP 2AF8A 4U0DA 2LL8A 2JYGA 3I55P 2CQ8A 1S72P 5BS2A 2CGQA 1ACPA 2N6YA 2PEOA 3B4QA 4XFXA 2VLNA 2FQ0A 2CG5B 1IUQA 3G0VA 4M0IA 2KOQA 2K2QA 2XZ1C 3G21A 3GKLC 1BAJA 5HGNA 5EW5E 4GR6A 1YI2P 2CWOA 5HGMA 1Q81Q 2K93A 1IMQA 2FQ1A 2MVUA 5F2OA 2KG6A 2GZIA 3CCMP 2XZ0D 1YITP 2KR5A 2KODA 2VLQA 3EJDA 4GR2A 2LMLA 4XFYA 3G1IA 1VHNA 2BUOA 1JJ2O 4QNBA 2JO0A 2Z46A 3NTEA 1E6JP 1L0IA 3EJBA 2VLPA 2N98A 2VSQA 1Z6MA 3RG2A 5KP8B 5HGOA 1GXHA 2MY5A 2JBGA 2PEJA 2KOPA 1YHQP 1ZNVA 2PEQA 3DS5A 2MF4A 4U0CA 2JGPA 2EG5A 3VRLC 2MVVA 3DS0A 2N5HA 2FADA 1VQ9P 3CCEP 1W2BO 4XROA 3CCUP 2KOSA 4XFZA 2CNRA 2PENA 1VQLP 1EIAA 1MZ8A 1NJIQ 2K0YA 2N5IA 5HGLA 1VQ4P 2GZGA 1D1DA 4COCA 1BXIA 2KORA 2JQ4A 1CEIA 3G26A 1IMPA 1DV5A 2KGEA 3G1GA 3DPHA 4PH1A 3CMEP 2Z44A 2LOLA 2L4BA 2E1MA 2EIAA 3G28A 2PEKA 2LIWA 3CC4P 1VQNP 1DNYA 2KGDA 1Q7YQ 1QVGO 4XRQA 1HQBA 2MR7A 2QEXP 2PNGA 2GZJA 2M8NA 3H0DA 5F2NA 4F37A 2JAZA 2QA4P 3G6EP 1GPJA 2ONTA 4HKGA 3DS4A 2KOOA 2OARA 3WBHA 1UNKA 1FR2A 2GYKA 1QRJA 1KC8Q 4WYMA 5DCKA 2LTEA 3DS1A 4PH0A 2KG9A 2GZFA 2KG8A 1F80D 1ZMBA 1OR5A 3E2DA 1VQ8P 4R0MA 1VQ5P 5F2KA 1YJNP 1VQ6P 1K9MQ 2XT1A 2KGCA 4IZ6A 5BS1A 3I56P 3OW2O 2LIUA 1VQOP 2GDWA 2L0QA 4U0FA 2XXMA 2K92A 1KQSO 2ERHA 1VQ7P 2GZEA 5I4TG 3B5IA 2JYLA 2JU1A 5HVCA 2FVFA 2PEMA 2FAEA 1Q82Q 2NO8A 1M1KQ 3RG6C 2M8LA 1YIJP 3DTJA 3H4EA 4MRTC 3MGEA 1K30A 1M74A 2KGAA 1YJWP 1L0HA 2AVAA 1E0HA 4H2XC 3GJNA 5KP7B 3CPWO 1RNIA 1X3OA 2FACA 3CD6P 2K94A 3CCJP 1RO0A 1A8OA 2GDYA 2K0DX 4BPGA 4BPFA 3LRYA 3G71P 2K5XA 1M6EX 1VQKP 2K0XA 2N6ZA 4H2YC 7CEIA 4CA3A 5JPAA 3CCRP 4U0EA 2DGYA 2VLOA 2FQ2A 3LMOA 1AUMA 3CE7A 2OTLP 2PY8A 3EJEA 4U0AA 2MR8A 2XV6A 2X2BA 3CXCO 2AFEA 1VQPP 2MD9A 3CC7P 2ROQA 4IPYA 3M1MA 2L9FA 5KP6B 2BHVA 4NEOA 2P9XA 1KLPA
chains in the Genus database with same CATH topology
2AFDA 2LKIA 5HV8A 2FQ0A 2CG5B 2LIUA 2K0YA 2N5IA 2GDWA 4PWVB 2L0QA 1NQ4A 2KOQA 5EJDA 2K2QA 2K92A 2XZ1C 2KORA 2JQ4A 2GDXA 1DV5A 4BPHA 2JU1A 5HVCA 2FVFA 2K93A 2FAEA 2KGEA 4H2WC 2FQ1A 1HY8A 2EHTA 2KW2A 1VKUA 2MVUA 2KG6A 2XZ0D 2LOLA 1AF8A 2JU2A 2L4BA 4PXHB 2KR5A 4MRTC 3EJDA 3NY7B 2LMLA 2FVAA 2LIWA 2KGAA 1L0HA 2AVAA 4H2XC 1DNYA 1T8KA 2KGDA 5KP7B 1X3OA 2FACA 1L0IA 3EJBA 2K94A 2EHSA 4DG9A 2N98A 2QNWA 1HQBA 2VSQA 3RG2A 2MR7A 2LPKA 5KP8B 2GDYA 2M5RA 4BPGA 2PNGA 5CZDB 2L22A 2MY5A 4BPFA 2DNWA 2K0XA 2N6ZA 4H2YC 2KWLA 4CA3A 2FHSC 2FVEA 2KOPA 4HKGA 2KOOA 3GZMA 3GZLA 2FQ2A 3LMOA 2MF4A 2N50A 2AF8A 2LTEA 3CE7A 3EJEA 2JGPA 2LL8A 2KG9A 2MR8A 2KG8A 2X2BA 1F80D 2MVVA 2AFEA 1OR5A 2N5HA 2MD9A 2FADA 4R0MA 2ROQA 2CQ8A 2L9FA 5KP6B 2KGCA 4IZ6A 2KOSA 4NEOA 2CGQA 1ACPA 1KLPA 2CNRA 2N6YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AFD A;  2LKI A;  5HV8 A;  2FQ0 A;  2CG5 B;  2LIU A;  2K0Y A;  2N5I A;  2GDW A;  4PWV B;  2L0Q A;  1NQ4 A;  2KOQ A;  5EJD A;  2K2Q A;  2K92 A;  2XZ1 C;  2KOR A;  2JQ4 A;  2GDX A;  1DV5 A;  4BPH A;  2JU1 A;  5HVC A;  2FVF A;  2K93 A;  2FAE A;  2KGE A;  4H2W C;  2FQ1 A;  1HY8 A;  2EHT A;  2KW2 A;  1VKU A;  2MVU A;  2KG6 A;  2XZ0 D;  2LOL A;  1AF8 A;  2JU2 A;  2L4B A;  4PXH B;  2KR5 A;  4MRT C;  3EJD A;  3NY7 B;  2LML A;  2FVA A;  2LIW A;  2KGA A;  1L0H A;  2AVA A;  4H2X C;  1DNY A;  1T8K A;  2KGD A;  5KP7 B;  1X3O A;  2FAC A;  1L0I A;  3EJB A;  2K94 A;  2EHS A;  4DG9 A;  2N98 A;  2QNW A;  1HQB A;  2VSQ A;  3RG2 A;  2MR7 A;  2LPK A;  5KP8 B;  2GDY A;  2M5R A;  4BPG A;  2PNG A;  5CZD B;  2L22 A;  2MY5 A;  4BPF A;  2DNW A;  2K0X A;  2N6Z A;  4H2Y C;  2KWL A;  4CA3 A;  2FHS C;  2FVE A;  2KOP A;  4HKG A;  2KOO A;  3GZM A;  3GZL A;  2FQ2 A;  3LMO A;  2MF4 A;  2N50 A;  2AF8 A;  2LTE A;  3CE7 A;  3EJE A;  2JGP A;  2LL8 A;  2KG9 A;  2MR8 A;  2KG8 A;  2X2B A;  1F80 D;  2MVV A;  2AFE A;  1OR5 A;  2N5H A;  2MD9 A;  2FAD A;  4R0M A;  2ROQ A;  2CQ8 A;  2L9F A;  5KP6 B;  2KGC A;  4IZ6 A;  2KOS A;  4NEO A;  2CGQ A;  1ACP A;  1KLP A;  2CNR A;  2N6Y A; 
#chains in the Genus database with same CATH topology
 2AFD A;  2EFJ A;  1RO2 A;  2Z45 A;  4QKO A;  3DS3 A;  2LKI A;  3P05 A;  1Q86 Q;  3G29 A;  5HV8 A;  3CC2 P;  3U43 A;  1N8R Q;  1GXG A;  4PWV B;  3Q20 A;  1NQ4 A;  5EJD A;  1M6N A;  3HYB A;  3DS2 A;  1AYI A;  1VQM P;  1KD1 Q;  2GDX A;  2OTJ P;  1M90 Q;  2M8P A;  4BPH A;  1UJZ A;  3CCS P;  4H2W C;  3CCV P;  1QVF O;  1HY8 A;  2EHT A;  2KW2 A;  1VKU A;  1EOQ A;  3H47 A;  1AF8 A;  2JU2 A;  4PXH B;  4COP A;  2LF4 A;  3NY7 B;  3CCL P;  2FVA A;  4UHP B;  2WPT A;  1T8K A;  2PEI A;  1EMV A;  1A43 A;  2L6E A;  2EHS A;  4DG9 A;  3HZQ A;  2QNW A;  2LPK A;  4U0B A;  2M5R A;  5CZD B;  2L22 A;  2DNW A;  3G4S P;  2KWL A;  1YJ9 P;  2FHS C;  3CMA P;  2FVE A;  2JB0 A;  3GZM A;  3GZL A;  1K73 Q;  1K8A Q;  2N50 A;  3CCQ P;  2AF8 A;  4U0D A;  2LL8 A;  2JYG A;  3I55 P;  2CQ8 A;  1S72 P;  5BS2 A;  2CGQ A;  1ACP A;  2N6Y A;  2PEO A;  3B4Q A;  4XFX A;  2VLN A;  2FQ0 A;  2CG5 B;  1IUQ A;  3G0V A;  4M0I A;  2KOQ A;  2K2Q A;  2XZ1 C;  3G21 A;  3GKL C;  1BAJ A;  5HGN A;  5EW5 E;  4GR6 A;  1YI2 P;  2CWO A;  5HGM A;  1Q81 Q;  2K93 A;  1IMQ A;  2FQ1 A;  2MVU A;  5F2O A;  2KG6 A;  2GZI A;  3CCM P;  2XZ0 D;  1YIT P;  2KR5 A;  2KOD A;  2VLQ A;  3EJD A;  4GR2 A;  2LML A;  4XFY A;  3G1I A;  1VHN A;  2BUO A;  1JJ2 O;  4QNB A;  2JO0 A;  2Z46 A;  3NTE A;  1E6J P;  1L0I A;  3EJB A;  2VLP A;  2N98 A;  2VSQ A;  1Z6M A;  3RG2 A;  5KP8 B;  5HGO A;  1GXH A;  2MY5 A;  2JBG A;  2PEJ A;  2KOP A;  1YHQ P;  1ZNV A;  2PEQ A;  3DS5 A;  2MF4 A;  4U0C A;  2JGP A;  2EG5 A;  3VRL C;  2MVV A;  3DS0 A;  2N5H A;  2FAD A;  1VQ9 P;  3CCE P;  1W2B O;  4XRO A;  3CCU P;  2KOS A;  4XFZ A;  2CNR A;  2PEN A;  1VQL P;  1EIA A;  1MZ8 A;  1NJI Q;  2K0Y A;  2N5I A;  5HGL A;  1VQ4 P;  2GZG A;  1D1D A;  4COC A;  1BXI A;  2KOR A;  2JQ4 A;  1CEI A;  3G26 A;  1IMP A;  1DV5 A;  2KGE A;  3G1G A;  3DPH A;  4PH1 A;  3CME P;  2Z44 A;  2LOL A;  2L4B A;  2E1M A;  2EIA A;  3G28 A;  2PEK A;  2LIW A;  3CC4 P;  1VQN P;  1DNY A;  2KGD A;  1Q7Y Q;  1QVG O;  4XRQ A;  1HQB A;  2MR7 A;  2QEX P;  2PNG A;  2GZJ A;  2M8N A;  3H0D A;  5F2N A;  4F37 A;  2JAZ A;  2QA4 P;  3G6E P;  1GPJ A;  2ONT A;  4HKG A;  3DS4 A;  2KOO A;  2OAR A;  3WBH A;  1UNK A;  1FR2 A;  2GYK A;  1QRJ A;  1KC8 Q;  4WYM A;  5DCK A;  2LTE A;  3DS1 A;  4PH0 A;  2KG9 A;  2GZF A;  2KG8 A;  1F80 D;  1ZMB A;  1OR5 A;  3E2D A;  1VQ8 P;  4R0M A;  1VQ5 P;  5F2K A;  1YJN P;  1VQ6 P;  1K9M Q;  2XT1 A;  2KGC A;  4IZ6 A;  5BS1 A;  3I56 P;  3OW2 O;  2LIU A;  1VQO P;  2GDW A;  2L0Q A;  4U0F A;  2XXM A;  2K92 A;  1KQS O;  2ERH A;  1VQ7 P;  2GZE A;  5I4T G;  3B5I A;  2JYL A;  2JU1 A;  5HVC A;  2FVF A;  2PEM A;  2FAE A;  1Q82 Q;  2NO8 A;  1M1K Q;  3RG6 C;  2M8L A;  1YIJ P;  3DTJ A;  3H4E A;  4MRT C;  3MGE A;  1K30 A;  1M74 A;  2KGA A;  1YJW P;  1L0H A;  2AVA A;  1E0H A;  4H2X C;  3GJN A;  5KP7 B;  3CPW O;  1RNI A;  1X3O A;  2FAC A;  3CD6 P;  2K94 A;  3CCJ P;  1RO0 A;  1A8O A;  2GDY A;  2K0D X;  4BPG A;  4BPF A;  3LRY A;  3G71 P;  2K5X A;  1M6E X;  1VQK P;  2K0X A;  2N6Z A;  4H2Y C;  7CEI A;  4CA3 A;  5JPA A;  3CCR P;  4U0E A;  2DGY A;  2VLO A;  2FQ2 A;  3LMO A;  1AUM A;  3CE7 A;  2OTL P;  2PY8 A;  3EJE A;  4U0A A;  2MR8 A;  2XV6 A;  2X2B A;  3CXC O;  2AFE A;  1VQP P;  2MD9 A;  3CC7 P;  2ROQ A;  4IPY A;  3M1M A;  2L9F A;  5KP6 B;  2BHV A;  4NEO A;  2P9X A;  1KLP A; 
#chains in the Genus database with same CATH homology
 2AFD A;  2LKI A;  5HV8 A;  2FQ0 A;  2CG5 B;  2LIU A;  2K0Y A;  2N5I A;  2GDW A;  4PWV B;  2L0Q A;  1NQ4 A;  2KOQ A;  5EJD A;  2K2Q A;  2K92 A;  2XZ1 C;  2KOR A;  2JQ4 A;  2GDX A;  1DV5 A;  4BPH A;  2JU1 A;  5HVC A;  2FVF A;  2K93 A;  2FAE A;  2KGE A;  4H2W C;  2FQ1 A;  1HY8 A;  2EHT A;  2KW2 A;  1VKU A;  2MVU A;  2KG6 A;  2XZ0 D;  2LOL A;  1AF8 A;  2JU2 A;  2L4B A;  4PXH B;  2KR5 A;  4MRT C;  3EJD A;  3NY7 B;  2LML A;  2FVA A;  2LIW A;  2KGA A;  1L0H A;  2AVA A;  4H2X C;  1DNY A;  1T8K A;  2KGD A;  5KP7 B;  1X3O A;  2FAC A;  1L0I A;  3EJB A;  2K94 A;  2EHS A;  4DG9 A;  2N98 A;  2QNW A;  1HQB A;  2VSQ A;  3RG2 A;  2MR7 A;  2LPK A;  5KP8 B;  2GDY A;  2M5R A;  4BPG A;  2PNG A;  5CZD B;  2L22 A;  2MY5 A;  4BPF A;  2DNW A;  2K0X A;  2N6Z A;  4H2Y C;  2KWL A;  4CA3 A;  2FHS C;  2FVE A;  2KOP A;  4HKG A;  2KOO A;  3GZM A;  3GZL A;  2FQ2 A;  3LMO A;  2MF4 A;  2N50 A;  2AF8 A;  2LTE A;  3CE7 A;  3EJE A;  2JGP A;  2LL8 A;  2KG9 A;  2MR8 A;  2KG8 A;  2X2B A;  1F80 D;  2MVV A;  2AFE A;  1OR5 A;  2N5H A;  2MD9 A;  2FAD A;  4R0M A;  2ROQ A;  2CQ8 A;  2L9F A;  5KP6 B;  2KGC A;  4IZ6 A;  2KOS A;  4NEO A;  2CGQ A;  1ACP A;  1KLP A;  2CNR A;  2N6Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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