2KGDA

Nmr solution structures of 3-oxo-butyl-acp, an intermediate mimic from the actinorhodin polyketide synthase in streptomyces coelicolor
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
86
structure length
86
Chain Sequence
MATLLTTDDLRRALVESAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGALAEAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Biosynthetic protein
molecule keywords Actinorhodin polyketide synthase acyl carrier protein
publication title Probing the Interactions of Early Polyketide Intermediates with the Actinorhodin ACP from S. coelicolor A3(2).
pubmed doi rcsb
source organism Streptomyces coelicolor
total genus 26
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2009-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 2kgdA00
2MVVA 2JU1A 2PNGA 2LKIA 2LTEA 4PXHB 3CE7A 5HV8A 2N6YA 1X3OA 4PWVB 4CA3A 3RG2A 5HVCA 3GZMA 2CG5B 2FHSC 2MF4A 2L4BA 3EJEA 4DG9A 2X2BA 2FQ0A 2EHTA 4BPFA 2KG6A 2K0XA 3LMOA 2JGPA 2AFEA 2MVUA 5KP8B 2FVEA 4BPGA 2JQ4A 2CQ8A 2L0QA 2MY5A 2QNWA 5EJDA 2L22A 4H2XC 2N50A 2N5IA 2N98A 1HY8A 1HQBA 2LPKA 4H2YC 2DNWA 2FADA 2KR5A 4MRTC 2FVFA 1ACPA 1L0HA 2MR8A 2FACA 2KOPA 2K92A 3GZLA 2MD9A 2KGCA 2XZ0D 4BPHA 1DNYA 2ROQA 2KOQA 5CZDB 2KG9A 2GDYA 2L9FA 1DV5A 2K94A 2KGDA 2KOOA 3NY7B 2LOLA 2AFDA 2AVAA 4R0MA 5KP6B 2FQ2A 2GDXA 2FAEA 2K93A 2CNRA 2KG8A 1NQ4A 2MR7A 2LIWA 2FVAA 2LMLA 5KP7B 2KWLA 2KGEA 3EJBA 4H2WC 1F80D 4IZ6A 1T8KA 4NEOA 1OR5A 2KW2A 2XZ1C 2N6ZA 2FQ1A 1KLPA 2K0YA 2K2QA 3EJDA 2M5RA 4HKGA 2VSQA 2N5HA 2CGQA 2AF8A 2KORA 1L0IA 2KOSA 2LIUA 2LL8A 2GDWA 1AF8A 2JU2A 2KGAA 2EHSA 1VKUA
chains in the Genus database with same CATH superfamily
1AYIA 2KODA 2JU1A 2N6YA 4PWVB 1N8RQ 2QA4P 1VQ5P 2FHSC 4DG9A 1E6JP 2JBGA 2X2BA 2OARA 3U43A 2M8NA 1QVGO 2JO0A 2JGPA 5KP8B 1YJWP 3CCVP 4U0BA 2CWOA 2N50A 1HY8A 2PEOA 2M8LA 1IMQA 2DNWA 1Q82Q 2FACA 2KOPA 3GZLA 1M1KQ 1JJ2O 2KGCA 4U0AA 2GDYA 4UHPB 1Q81Q 2EG5A 2AVAA 5KP6B 3G71P 3OW2O 5I4TG 2CNRA 1NQ4A 5HGNA 1EMVA 2LMLA 1VQ7P 2VLOA 1A43A 2KGEA 1VQPP 1BAJA 4IZ6A 3CCLP 3G21A 1ZNVA 1OR5A 1K9MQ 2N6ZA 1Z6MA 2K0YA 2EIAA 4HKGA 1YI2P 1UJZA 5HGLA 4XRQA 2CGQA 2AF8A 2KORA 2GZGA 1AF8A 2KGAA 1YJNP 2MVVA 2LKIA 1EOQA 5HV8A 2GZIA 4WYMA 1VQ4P 2MF4A 3CMEP 2VLPA 2ERHA 1VQOP 1MZ8A 2FQ0A 1K8AQ 2EHTA 1VQ8P 1FR2A 3GKLC 2K0XA 1ZMBA 1YITP 2LF4A 3CXCO 3CCMP 1S72P 2AFEA 3CCEP 2FVEA 2Z46A 3NTEA 2QNWA 2N5IA 2VLNA 1VQLP 2WPTA 3G6EP 3CCQP 2QEXP 3H4EA 1EIAA 4H2YC 5F2OA 2FADA 1QVFO 1UNKA 4MRTC 1GXHA 3B4QA 4PH1A 2K92A 2PENA 1Q86Q 2L9FA 1DV5A 1K30A 1VQ6P 3NY7B 5F2KA 2GYKA 2PEQA 2LOLA 3DS2A 2GDXA 2MR7A 2LIWA 4M0IA 3DPHA 3B5IA 4COPA 2KWLA 3G4SP 2K0DX 3EJBA 3RG6C 1IMPA 1T8KA 2NO8A 4NEOA 2XXMA 2OTLP 2FQ1A 1KLPA 3G1IA 2K2QA 3VRLC 4IPYA 3CPWO 2PEJA 5JPAA 1RNIA 3E2DA 2L6EA 2PNGA 4QKOA 1KC8Q 2LTEA 4XFYA 2ONTA 1Q7YQ 3RG2A 5HVCA 2GZEA 1VQNP 3GZMA 2CG5B 3EJEA 2L4BA 4GR2A 1YHQP 3CD6P 3H47A 3CCUP 4U0CA 2BHVA 2Z44A 2KG6A 1YJ9P 2E1MA 2MVUA 2PEMA 3I56P 2K5XA 4BPGA 2JQ4A 2CQ8A 2L0QA 5EJDA 3DS5A 1W2BO 1KD1Q 2LPKA 1NJIQ 3CC7P 7CEIA 3Q20A 4BPHA 1DNYA 2ROQA 2KOQA 5BS1A 5F2NA 5CZDB 3WBHA 2KG9A 1A8OA 2KOOA 2JB0A 1VQ9P 2GZFA 2FQ2A 2FAEA 2K93A 2KG8A 2GZJA 3CCSP 3G1GA 2FVAA 2JAZA 3H0DA 5DCKA 3LRYA 4H2WC 1F80D 1RO0A 3G29A 3G28A 5HGMA 2KW2A 1VQKP 2XZ1C 5BS2A 1M6NA 1QRJA 4XFZA 5EW5E 1E0HA 2KOSA 2LIUA 1AUMA 1M74A 2EHSA 3I55P 3P05A 2JYLA 4PH0A 3CE7A 4PXHB 1X3OA 1K73Q 2PEKA 3DTJA 4CA3A 2OTJP 1CEIA 2PEIA 3M1MA 3CCRP 3CC2P 4BPFA 1BXIA 3LMOA 2PY8A 1VQMP 2MY5A 3CCJP 2L22A 4H2XC 2N98A 4U0EA 2EFJA 1HQBA 3G26A 1M6EX 2KR5A 1ACPA 2FVFA 1L0HA 3DS3A 2MR8A 4QNBA 2XV6A 2MD9A 1RO2A 4F37A 2XZ0D 2K94A 4U0DA 2KGDA 5HGOA 1YIJP 3HZQA 2M8PA 2AFDA 4R0MA 4XFXA 2VLQA 3CC4P 3CMAP 3DS4A 5KP7B 2Z45A 2JYGA 1D1DA 2P9XA 1VHNA 1M90Q 4COCA 1KQSO 3DS0A 1GXGA 1IUQA 3GJNA 3G0VA 3MGEA 3DS1A 3HYBA 3EJDA 2XT1A 2M5RA 4U0FA 2BUOA 2VSQA 2N5HA 1GPJA 4XROA 1L0IA 2LL8A 2GDWA 4GR6A 2JU2A 2DGYA 1VKUA
chains in the Genus database with same CATH topology
2MVVA 2JU1A 2PNGA 2LKIA 2LTEA 4PXHB 3CE7A 5HV8A 2N6YA 1X3OA 4PWVB 4CA3A 3RG2A 5HVCA 3GZMA 2CG5B 2FHSC 2MF4A 2L4BA 3EJEA 4DG9A 2X2BA 2FQ0A 2EHTA 4BPFA 2KG6A 2K0XA 3LMOA 2JGPA 2AFEA 2MVUA 5KP8B 2FVEA 4BPGA 2JQ4A 2CQ8A 2L0QA 2MY5A 2QNWA 5EJDA 2L22A 4H2XC 2N50A 2N5IA 2N98A 1HY8A 1HQBA 2LPKA 4H2YC 2DNWA 2FADA 2KR5A 4MRTC 2FVFA 1ACPA 1L0HA 2MR8A 2FACA 2KOPA 2K92A 3GZLA 2MD9A 2KGCA 2XZ0D 4BPHA 1DNYA 2ROQA 2KOQA 5CZDB 2KG9A 2GDYA 2L9FA 1DV5A 2K94A 2KGDA 2KOOA 3NY7B 2LOLA 2AFDA 2AVAA 4R0MA 5KP6B 2FQ2A 2GDXA 2FAEA 2K93A 2CNRA 2KG8A 1NQ4A 2MR7A 2LIWA 2FVAA 2LMLA 5KP7B 2KWLA 2KGEA 3EJBA 4H2WC 1F80D 4IZ6A 1T8KA 4NEOA 1OR5A 2KW2A 2XZ1C 2N6ZA 2FQ1A 1KLPA 2K0YA 2K2QA 3EJDA 2M5RA 4HKGA 2VSQA 2N5HA 2CGQA 2AF8A 2KORA 1L0IA 2KOSA 2LIUA 2LL8A 2GDWA 1AF8A 2JU2A 2KGAA 2EHSA 1VKUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MVV A;  2JU1 A;  2PNG A;  2LKI A;  2LTE A;  4PXH B;  3CE7 A;  5HV8 A;  2N6Y A;  1X3O A;  4PWV B;  4CA3 A;  3RG2 A;  5HVC A;  3GZM A;  2CG5 B;  2FHS C;  2MF4 A;  2L4B A;  3EJE A;  4DG9 A;  2X2B A;  2FQ0 A;  2EHT A;  4BPF A;  2KG6 A;  2K0X A;  3LMO A;  2JGP A;  2AFE A;  2MVU A;  5KP8 B;  2FVE A;  4BPG A;  2JQ4 A;  2CQ8 A;  2L0Q A;  2MY5 A;  2QNW A;  5EJD A;  2L22 A;  4H2X C;  2N50 A;  2N5I A;  2N98 A;  1HY8 A;  1HQB A;  2LPK A;  4H2Y C;  2DNW A;  2FAD A;  2KR5 A;  4MRT C;  2FVF A;  1ACP A;  1L0H A;  2MR8 A;  2FAC A;  2KOP A;  2K92 A;  3GZL A;  2MD9 A;  2KGC A;  2XZ0 D;  4BPH A;  1DNY A;  2ROQ A;  2KOQ A;  5CZD B;  2KG9 A;  2GDY A;  2L9F A;  1DV5 A;  2K94 A;  2KGD A;  2KOO A;  3NY7 B;  2LOL A;  2AFD A;  2AVA A;  4R0M A;  5KP6 B;  2FQ2 A;  2GDX A;  2FAE A;  2K93 A;  2CNR A;  2KG8 A;  1NQ4 A;  2MR7 A;  2LIW A;  2FVA A;  2LML A;  5KP7 B;  2KWL A;  2KGE A;  3EJB A;  4H2W C;  1F80 D;  4IZ6 A;  1T8K A;  4NEO A;  1OR5 A;  2KW2 A;  2XZ1 C;  2N6Z A;  2FQ1 A;  1KLP A;  2K0Y A;  2K2Q A;  3EJD A;  2M5R A;  4HKG A;  2VSQ A;  2N5H A;  2CGQ A;  2AF8 A;  2KOR A;  1L0I A;  2KOS A;  2LIU A;  2LL8 A;  2GDW A;  1AF8 A;  2JU2 A;  2KGA A;  2EHS A;  1VKU A; 
#chains in the Genus database with same CATH topology
 1AYI A;  2KOD A;  2JU1 A;  2N6Y A;  4PWV B;  1N8R Q;  2QA4 P;  1VQ5 P;  2FHS C;  4DG9 A;  1E6J P;  2JBG A;  2X2B A;  2OAR A;  3U43 A;  2M8N A;  1QVG O;  2JO0 A;  2JGP A;  5KP8 B;  1YJW P;  3CCV P;  4U0B A;  2CWO A;  2N50 A;  1HY8 A;  2PEO A;  2M8L A;  1IMQ A;  2DNW A;  1Q82 Q;  2FAC A;  2KOP A;  3GZL A;  1M1K Q;  1JJ2 O;  2KGC A;  4U0A A;  2GDY A;  4UHP B;  1Q81 Q;  2EG5 A;  2AVA A;  5KP6 B;  3G71 P;  3OW2 O;  5I4T G;  2CNR A;  1NQ4 A;  5HGN A;  1EMV A;  2LML A;  1VQ7 P;  2VLO A;  1A43 A;  2KGE A;  1VQP P;  1BAJ A;  4IZ6 A;  3CCL P;  3G21 A;  1ZNV A;  1OR5 A;  1K9M Q;  2N6Z A;  1Z6M A;  2K0Y A;  2EIA A;  4HKG A;  1YI2 P;  1UJZ A;  5HGL A;  4XRQ A;  2CGQ A;  2AF8 A;  2KOR A;  2GZG A;  1AF8 A;  2KGA A;  1YJN P;  2MVV A;  2LKI A;  1EOQ A;  5HV8 A;  2GZI A;  4WYM A;  1VQ4 P;  2MF4 A;  3CME P;  2VLP A;  2ERH A;  1VQO P;  1MZ8 A;  2FQ0 A;  1K8A Q;  2EHT A;  1VQ8 P;  1FR2 A;  3GKL C;  2K0X A;  1ZMB A;  1YIT P;  2LF4 A;  3CXC O;  3CCM P;  1S72 P;  2AFE A;  3CCE P;  2FVE A;  2Z46 A;  3NTE A;  2QNW A;  2N5I A;  2VLN A;  1VQL P;  2WPT A;  3G6E P;  3CCQ P;  2QEX P;  3H4E A;  1EIA A;  4H2Y C;  5F2O A;  2FAD A;  1QVF O;  1UNK A;  4MRT C;  1GXH A;  3B4Q A;  4PH1 A;  2K92 A;  2PEN A;  1Q86 Q;  2L9F A;  1DV5 A;  1K30 A;  1VQ6 P;  3NY7 B;  5F2K A;  2GYK A;  2PEQ A;  2LOL A;  3DS2 A;  2GDX A;  2MR7 A;  2LIW A;  4M0I A;  3DPH A;  3B5I A;  4COP A;  2KWL A;  3G4S P;  2K0D X;  3EJB A;  3RG6 C;  1IMP A;  1T8K A;  2NO8 A;  4NEO A;  2XXM A;  2OTL P;  2FQ1 A;  1KLP A;  3G1I A;  2K2Q A;  3VRL C;  4IPY A;  3CPW O;  2PEJ A;  5JPA A;  1RNI A;  3E2D A;  2L6E A;  2PNG A;  4QKO A;  1KC8 Q;  2LTE A;  4XFY A;  2ONT A;  1Q7Y Q;  3RG2 A;  5HVC A;  2GZE A;  1VQN P;  3GZM A;  2CG5 B;  3EJE A;  2L4B A;  4GR2 A;  1YHQ P;  3CD6 P;  3H47 A;  3CCU P;  4U0C A;  2BHV A;  2Z44 A;  2KG6 A;  1YJ9 P;  2E1M A;  2MVU A;  2PEM A;  3I56 P;  2K5X A;  4BPG A;  2JQ4 A;  2CQ8 A;  2L0Q A;  5EJD A;  3DS5 A;  1W2B O;  1KD1 Q;  2LPK A;  1NJI Q;  3CC7 P;  7CEI A;  3Q20 A;  4BPH A;  1DNY A;  2ROQ A;  2KOQ A;  5BS1 A;  5F2N A;  5CZD B;  3WBH A;  2KG9 A;  1A8O A;  2KOO A;  2JB0 A;  1VQ9 P;  2GZF A;  2FQ2 A;  2FAE A;  2K93 A;  2KG8 A;  2GZJ A;  3CCS P;  3G1G A;  2FVA A;  2JAZ A;  3H0D A;  5DCK A;  3LRY A;  4H2W C;  1F80 D;  1RO0 A;  3G29 A;  3G28 A;  5HGM A;  2KW2 A;  1VQK P;  2XZ1 C;  5BS2 A;  1M6N A;  1QRJ A;  4XFZ A;  5EW5 E;  1E0H A;  2KOS A;  2LIU A;  1AUM A;  1M74 A;  2EHS A;  3I55 P;  3P05 A;  2JYL A;  4PH0 A;  3CE7 A;  4PXH B;  1X3O A;  1K73 Q;  2PEK A;  3DTJ A;  4CA3 A;  2OTJ P;  1CEI A;  2PEI A;  3M1M A;  3CCR P;  3CC2 P;  4BPF A;  1BXI A;  3LMO A;  2PY8 A;  1VQM P;  2MY5 A;  3CCJ P;  2L22 A;  4H2X C;  2N98 A;  4U0E A;  2EFJ A;  1HQB A;  3G26 A;  1M6E X;  2KR5 A;  1ACP A;  2FVF A;  1L0H A;  3DS3 A;  2MR8 A;  4QNB A;  2XV6 A;  2MD9 A;  1RO2 A;  4F37 A;  2XZ0 D;  2K94 A;  4U0D A;  2KGD A;  5HGO A;  1YIJ P;  3HZQ A;  2M8P A;  2AFD A;  4R0M A;  4XFX A;  2VLQ A;  3CC4 P;  3CMA P;  3DS4 A;  5KP7 B;  2Z45 A;  2JYG A;  1D1D A;  2P9X A;  1VHN A;  1M90 Q;  4COC A;  1KQS O;  3DS0 A;  1GXG A;  1IUQ A;  3GJN A;  3G0V A;  3MGE A;  3DS1 A;  3HYB A;  3EJD A;  2XT1 A;  2M5R A;  4U0F A;  2BUO A;  2VSQ A;  2N5H A;  1GPJ A;  4XRO A;  1L0I A;  2LL8 A;  2GDW A;  4GR6 A;  2JU2 A;  2DGY A;  1VKU A; 
#chains in the Genus database with same CATH homology
 2MVV A;  2JU1 A;  2PNG A;  2LKI A;  2LTE A;  4PXH B;  3CE7 A;  5HV8 A;  2N6Y A;  1X3O A;  4PWV B;  4CA3 A;  3RG2 A;  5HVC A;  3GZM A;  2CG5 B;  2FHS C;  2MF4 A;  2L4B A;  3EJE A;  4DG9 A;  2X2B A;  2FQ0 A;  2EHT A;  4BPF A;  2KG6 A;  2K0X A;  3LMO A;  2JGP A;  2AFE A;  2MVU A;  5KP8 B;  2FVE A;  4BPG A;  2JQ4 A;  2CQ8 A;  2L0Q A;  2MY5 A;  2QNW A;  5EJD A;  2L22 A;  4H2X C;  2N50 A;  2N5I A;  2N98 A;  1HY8 A;  1HQB A;  2LPK A;  4H2Y C;  2DNW A;  2FAD A;  2KR5 A;  4MRT C;  2FVF A;  1ACP A;  1L0H A;  2MR8 A;  2FAC A;  2KOP A;  2K92 A;  3GZL A;  2MD9 A;  2KGC A;  2XZ0 D;  4BPH A;  1DNY A;  2ROQ A;  2KOQ A;  5CZD B;  2KG9 A;  2GDY A;  2L9F A;  1DV5 A;  2K94 A;  2KGD A;  2KOO A;  3NY7 B;  2LOL A;  2AFD A;  2AVA A;  4R0M A;  5KP6 B;  2FQ2 A;  2GDX A;  2FAE A;  2K93 A;  2CNR A;  2KG8 A;  1NQ4 A;  2MR7 A;  2LIW A;  2FVA A;  2LML A;  5KP7 B;  2KWL A;  2KGE A;  3EJB A;  4H2W C;  1F80 D;  4IZ6 A;  1T8K A;  4NEO A;  1OR5 A;  2KW2 A;  2XZ1 C;  2N6Z A;  2FQ1 A;  1KLP A;  2K0Y A;  2K2Q A;  3EJD A;  2M5R A;  4HKG A;  2VSQ A;  2N5H A;  2CGQ A;  2AF8 A;  2KOR A;  1L0I A;  2KOS A;  2LIU A;  2LL8 A;  2GDW A;  1AF8 A;  2JU2 A;  2KGA A;  2EHS A;  1VKU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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