2KGDA

Nmr solution structures of 3-oxo-butyl-acp, an intermediate mimic from the actinorhodin polyketide synthase in streptomyces coelicolor
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
86
structure length
86
Chain Sequence
b'MATLLTTDDLRRALVESAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGALAEAA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Actinorhodin polyketide synthase acyl carrier protein
publication title Probing the Interactions of Early Polyketide Intermediates with the Actinorhodin ACP from S. coelicolor A3(2).
pubmed doi rcsb
source organism Streptomyces coelicolor
molecule tags Biosynthetic protein
total genus 26
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2009-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 2kgdA00
2FQ2A 2N6ZA 2M5RA 2LIWA 2CGQA 2L9FA 2MR7A 2GDXA 2CNRA 2FVAA 2KG9A 2XZ0D 3GZMA 2MD9A 2KGCA 4BPHA 2KG6A 2KOPA 2JQ4A 2AFDA 4R0MA 2K94A 2KG8A 1L0IA 2N5IA 2VSQA 1ACPA 4H2YC 1T8KA 5HV8A 2MVUA 3NY7B 4H2XC 1AF8A 2GDWA 2KGEA 4HKGA 2LKIA 4PXHB 5HVCA 2CG5B 4BPFA 2LL8A 2KGDA 2KOSA 2FQ1A 2N50A 5KP6B 2FAEA 3RG2A 2FHSC 2MR8A 2N5HA 2LIUA 2KORA 2N6YA 3EJDA 3EJBA 1L0HA 2CQ8A 3LMOA 4DG9A 1F80D 2XZ1C 4CA3A 2KW2A 2AF8A 2KGAA 2DNWA 1DV5A 2PNGA 1X3OA 2FVEA 4BPGA 3CE7A 2L4BA 1NQ4A 2KR5A 2FACA 2EHTA 5KP8B 2ROQA 2X2BA 2MF4A 2LPKA 2FQ0A 2MY5A 2AFEA 1VKUA 2JGPA 2LMLA 2L22A 3EJEA 2LOLA 2JU2A 4MRTC 2K92A 4NEOA 5KP7B 1HQBA 4IZ6A 2QNWA 3GZLA 2JU1A 2FADA 2AVAA 2N98A 2LTEA 2L0QA 4H2WC 2EHSA 2K93A 2K0XA 2KWLA 2KOQA 2GDYA 4PWVB 2FVFA 2KOOA 2MVVA 1KLPA 2K0YA 1HY8A 2K2QA 5EJDA 5CZDB 1DNYA 1OR5A
chains in the Genus database with same CATH superfamily
2M5RA 1Z6MA 5F2KA 1YJWP 2XZ0D 3CMEP 2MD9A 2M8LA 1EIAA 2KOPA 1QVFO 2AFDA 3CC2P 1QVGO 1RNIA 1T8KA 2MVUA 5F2NA 4H2XC 1AF8A 3B4QA 1Q81Q 3U43A 3CCMP 2NO8A 3WBHA 2P9XA 3GKLC 1M90Q 2GZFA 4BPFA 1VQLP 2KOSA 2N5HA 4COCA 2LIUA 2EIAA 1Q82Q 2WPTA 3CCVP 1VQPP 1L0HA 2VLNA 4DG9A 1ZNVA 1K30A 2JBGA 2DNWA 4UHPB 1CEIA 5BS1A 3CD6P 1NQ4A 1M1KQ 2QA4P 2PEOA 1Q86Q 2CWOA 2LOLA 2JAZA 4MRTC 3G29A 4NEOA 4GR2A 3E2DA 3G26A 3I55P 2JU1A 4WYMA 3CC7P 2LTEA 1QRJA 2K5XA 3CMAP 2EHSA 2K93A 3VRLC 2GDYA 3DTJA 2FVFA 3H0DA 2OTJP 3DS2A 5CZDB 5EJDA 1N8RQ 1DNYA 5HGOA 2FQ2A 2N6ZA 1AYIA 2LIWA 3NTEA 1UJZA 3CCJP 3G1IA 3GZMA 4BPHA 2KG6A 3DS0A 2PENA 1RO2A 2ONTA 2N5IA 3G21A 4H2YC 3P05A 3NY7B 1RO0A 2VLQA 4PH1A 4PXHB 1YI2P 2EG5A 1S72P 3CPWO 3CCQP 2BUOA 1VHNA 2N50A 3DS3A 3G28A 2GZIA 3DPHA 3Q20A 2MR8A 3CC4P 1VQOP 2KORA 3EJBA 2M8PA 2CQ8A 3LMOA 2Z46A 3GJNA 3RG6C 3CCUP 2GZGA 2AF8A 2GZEA 4U0FA 2PNGA 5BS2A 3CE7A 3DS5A 5KP8B 2X2BA 2LPKA 2MY5A 5HGLA 1VKUA 2JGPA 2LMLA 2JU2A 2K92A 5KP7B 1ZMBA 2QNWA 3H47A 1K9MQ 1IMPA 1YITP 1EOQA 1VQ6P 3G0VA 4M0IA 2AVAA 1IUQA 2LF4A 5HGMA 3CCRP 2QEXP 1NJIQ 2PEIA 4PWVB 4GR6A 2GZJA 2MVVA 3OW2O 4XRQA 1KD1Q 2EFJA 1A8OA 1EMVA 1HY8A 2K2QA 1YJ9P 1OR5A 3DS1A 2CGQA 1GXHA 2GYKA 2FVAA 2KG9A 2OARA 2KGCA 2L6EA 4U0BA 4F37A 2DGYA 4QKOA 2JQ4A 4QNBA 1FR2A 2VSQA 5HV8A 2OTLP 3B5IA 2KGEA 1KC8Q 2LKIA 3HYBA 1M74A 1VQNP 2KGDA 2FQ1A 5HGNA 2FAEA 3RG2A 1VQ9P 2FHSC 1D1DA 3EJDA 1F80D 2JYGA 2XV6A 5DCKA 4IPYA 2KW2A 5EW5E 5I4TG 1X3OA 2FVEA 2JYLA 4BPGA 2E1MA 2L4BA 2VLOA 5JPAA 1BAJA 2EHTA 2PEQA 1VQ5P 2AFEA 1MZ8A 2PEJA 4XROA 3EJEA 1VQ7P 1HQBA 4IZ6A 3GZLA 2FADA 2Z45A 3G4SP 1YHQP 1VQKP 1K73Q 4U0AA 2ERHA 2KOQA 3H4EA 2KOOA 3CXCO 1JJ2O 2MF4A 4COPA 3I56P 3MGEA 2M8NA 1E6JP 2L9FA 2MR7A 2GDXA 2CNRA 4PH0A 1GPJA 1Q7YQ 4XFXA 4R0MA 2K94A 2KG8A 1L0IA 1ACPA 2GDWA 2PEMA 2PY8A 3M1MA 3G6EP 4HKGA 1VQ8P 5HVCA 2CG5B 2LL8A 1KQSO 5KP6B 2XT1A 1VQMP 1YJNP 3G1GA 2N6YA 3CCLP 1W2BO 2JB0A 1K8AQ 3CCSP 4XFYA 2BHVA 2XZ1C 1VQ4P 4CA3A 1A43A 1DV5A 2KGAA 2K0DX 3LRYA 1IMQA 2KR5A 3CCEP 2FACA 2XXMA 3DS4A 2ROQA 4XFZA 2FQ0A 2L22A 3G71P 1BXIA 1E0HA 4U0EA 7CEIA 1M6EX 1UNKA 2N98A 2VLPA 2L0QA 5F2OA 1AUMA 4H2WC 4U0CA 2K0XA 2KWLA 1M6NA 1GXGA 1YIJP 2PEKA 2Z44A 2JO0A 1KLPA 2K0YA 2KODA 3HZQA 4U0DA
chains in the Genus database with same CATH topology
2FQ2A 2N6ZA 2M5RA 2LIWA 2CGQA 2L9FA 2MR7A 2GDXA 2CNRA 2FVAA 2KG9A 2XZ0D 3GZMA 2MD9A 2KGCA 4BPHA 2KG6A 2KOPA 2JQ4A 2AFDA 4R0MA 2K94A 2KG8A 1L0IA 2N5IA 2VSQA 1ACPA 4H2YC 1T8KA 5HV8A 2MVUA 3NY7B 4H2XC 1AF8A 2GDWA 2KGEA 4HKGA 2LKIA 4PXHB 5HVCA 2CG5B 4BPFA 2LL8A 2KGDA 2KOSA 2FQ1A 2N50A 5KP6B 2FAEA 3RG2A 2FHSC 2MR8A 2N5HA 2LIUA 2KORA 2N6YA 3EJDA 3EJBA 1L0HA 2CQ8A 3LMOA 4DG9A 1F80D 2XZ1C 4CA3A 2KW2A 2AF8A 2KGAA 2DNWA 1DV5A 2PNGA 1X3OA 2FVEA 4BPGA 3CE7A 2L4BA 1NQ4A 2KR5A 2FACA 2EHTA 5KP8B 2ROQA 2X2BA 2MF4A 2LPKA 2FQ0A 2MY5A 2AFEA 1VKUA 2JGPA 2LMLA 2L22A 3EJEA 2LOLA 2JU2A 4MRTC 2K92A 4NEOA 5KP7B 1HQBA 4IZ6A 2QNWA 3GZLA 2JU1A 2FADA 2AVAA 2N98A 2LTEA 2L0QA 4H2WC 2EHSA 2K93A 2K0XA 2KWLA 2KOQA 2GDYA 4PWVB 2FVFA 2KOOA 2MVVA 1KLPA 2K0YA 1HY8A 2K2QA 5EJDA 5CZDB 1DNYA 1OR5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FQ2 A;  2N6Z A;  2M5R A;  2LIW A;  2CGQ A;  2L9F A;  2MR7 A;  2GDX A;  2CNR A;  2FVA A;  2KG9 A;  2XZ0 D;  3GZM A;  2MD9 A;  2KGC A;  4BPH A;  2KG6 A;  2KOP A;  2JQ4 A;  2AFD A;  4R0M A;  2K94 A;  2KG8 A;  1L0I A;  2N5I A;  2VSQ A;  1ACP A;  4H2Y C;  1T8K A;  5HV8 A;  2MVU A;  3NY7 B;  4H2X C;  1AF8 A;  2GDW A;  2KGE A;  4HKG A;  2LKI A;  4PXH B;  5HVC A;  2CG5 B;  4BPF A;  2LL8 A;  2KGD A;  2KOS A;  2FQ1 A;  2N50 A;  5KP6 B;  2FAE A;  3RG2 A;  2FHS C;  2MR8 A;  2N5H A;  2LIU A;  2KOR A;  2N6Y A;  3EJD A;  3EJB A;  1L0H A;  2CQ8 A;  3LMO A;  4DG9 A;  1F80 D;  2XZ1 C;  4CA3 A;  2KW2 A;  2AF8 A;  2KGA A;  2DNW A;  1DV5 A;  2PNG A;  1X3O A;  2FVE A;  4BPG A;  3CE7 A;  2L4B A;  1NQ4 A;  2KR5 A;  2FAC A;  2EHT A;  5KP8 B;  2ROQ A;  2X2B A;  2MF4 A;  2LPK A;  2FQ0 A;  2MY5 A;  2AFE A;  1VKU A;  2JGP A;  2LML A;  2L22 A;  3EJE A;  2LOL A;  2JU2 A;  4MRT C;  2K92 A;  4NEO A;  5KP7 B;  1HQB A;  4IZ6 A;  2QNW A;  3GZL A;  2JU1 A;  2FAD A;  2AVA A;  2N98 A;  2LTE A;  2L0Q A;  4H2W C;  2EHS A;  2K93 A;  2K0X A;  2KWL A;  2KOQ A;  2GDY A;  4PWV B;  2FVF A;  2KOO A;  2MVV A;  1KLP A;  2K0Y A;  1HY8 A;  2K2Q A;  5EJD A;  5CZD B;  1DNY A;  1OR5 A; 
#chains in the Genus database with same CATH topology
 2M5R A;  1Z6M A;  5F2K A;  1YJW P;  2XZ0 D;  3CME P;  2MD9 A;  2M8L A;  1EIA A;  2KOP A;  1QVF O;  2AFD A;  3CC2 P;  1QVG O;  1RNI A;  1T8K A;  2MVU A;  5F2N A;  4H2X C;  1AF8 A;  3B4Q A;  1Q81 Q;  3U43 A;  3CCM P;  2NO8 A;  3WBH A;  2P9X A;  3GKL C;  1M90 Q;  2GZF A;  4BPF A;  1VQL P;  2KOS A;  2N5H A;  4COC A;  2LIU A;  2EIA A;  1Q82 Q;  2WPT A;  3CCV P;  1VQP P;  1L0H A;  2VLN A;  4DG9 A;  1ZNV A;  1K30 A;  2JBG A;  2DNW A;  4UHP B;  1CEI A;  5BS1 A;  3CD6 P;  1NQ4 A;  1M1K Q;  2QA4 P;  2PEO A;  1Q86 Q;  2CWO A;  2LOL A;  2JAZ A;  4MRT C;  3G29 A;  4NEO A;  4GR2 A;  3E2D A;  3G26 A;  3I55 P;  2JU1 A;  4WYM A;  3CC7 P;  2LTE A;  1QRJ A;  2K5X A;  3CMA P;  2EHS A;  2K93 A;  3VRL C;  2GDY A;  3DTJ A;  2FVF A;  3H0D A;  2OTJ P;  3DS2 A;  5CZD B;  5EJD A;  1N8R Q;  1DNY A;  5HGO A;  2FQ2 A;  2N6Z A;  1AYI A;  2LIW A;  3NTE A;  1UJZ A;  3CCJ P;  3G1I A;  3GZM A;  4BPH A;  2KG6 A;  3DS0 A;  2PEN A;  1RO2 A;  2ONT A;  2N5I A;  3G21 A;  4H2Y C;  3P05 A;  3NY7 B;  1RO0 A;  2VLQ A;  4PH1 A;  4PXH B;  1YI2 P;  2EG5 A;  1S72 P;  3CPW O;  3CCQ P;  2BUO A;  1VHN A;  2N50 A;  3DS3 A;  3G28 A;  2GZI A;  3DPH A;  3Q20 A;  2MR8 A;  3CC4 P;  1VQO P;  2KOR A;  3EJB A;  2M8P A;  2CQ8 A;  3LMO A;  2Z46 A;  3GJN A;  3RG6 C;  3CCU P;  2GZG A;  2AF8 A;  2GZE A;  4U0F A;  2PNG A;  5BS2 A;  3CE7 A;  3DS5 A;  5KP8 B;  2X2B A;  2LPK A;  2MY5 A;  5HGL A;  1VKU A;  2JGP A;  2LML A;  2JU2 A;  2K92 A;  5KP7 B;  1ZMB A;  2QNW A;  3H47 A;  1K9M Q;  1IMP A;  1YIT P;  1EOQ A;  1VQ6 P;  3G0V A;  4M0I A;  2AVA A;  1IUQ A;  2LF4 A;  5HGM A;  3CCR P;  2QEX P;  1NJI Q;  2PEI A;  4PWV B;  4GR6 A;  2GZJ A;  2MVV A;  3OW2 O;  4XRQ A;  1KD1 Q;  2EFJ A;  1A8O A;  1EMV A;  1HY8 A;  2K2Q A;  1YJ9 P;  1OR5 A;  3DS1 A;  2CGQ A;  1GXH A;  2GYK A;  2FVA A;  2KG9 A;  2OAR A;  2KGC A;  2L6E A;  4U0B A;  4F37 A;  2DGY A;  4QKO A;  2JQ4 A;  4QNB A;  1FR2 A;  2VSQ A;  5HV8 A;  2OTL P;  3B5I A;  2KGE A;  1KC8 Q;  2LKI A;  3HYB A;  1M74 A;  1VQN P;  2KGD A;  2FQ1 A;  5HGN A;  2FAE A;  3RG2 A;  1VQ9 P;  2FHS C;  1D1D A;  3EJD A;  1F80 D;  2JYG A;  2XV6 A;  5DCK A;  4IPY A;  2KW2 A;  5EW5 E;  5I4T G;  1X3O A;  2FVE A;  2JYL A;  4BPG A;  2E1M A;  2L4B A;  2VLO A;  5JPA A;  1BAJ A;  2EHT A;  2PEQ A;  1VQ5 P;  2AFE A;  1MZ8 A;  2PEJ A;  4XRO A;  3EJE A;  1VQ7 P;  1HQB A;  4IZ6 A;  3GZL A;  2FAD A;  2Z45 A;  3G4S P;  1YHQ P;  1VQK P;  1K73 Q;  4U0A A;  2ERH A;  2KOQ A;  3H4E A;  2KOO A;  3CXC O;  1JJ2 O;  2MF4 A;  4COP A;  3I56 P;  3MGE A;  2M8N A;  1E6J P;  2L9F A;  2MR7 A;  2GDX A;  2CNR A;  4PH0 A;  1GPJ A;  1Q7Y Q;  4XFX A;  4R0M A;  2K94 A;  2KG8 A;  1L0I A;  1ACP A;  2GDW A;  2PEM A;  2PY8 A;  3M1M A;  3G6E P;  4HKG A;  1VQ8 P;  5HVC A;  2CG5 B;  2LL8 A;  1KQS O;  5KP6 B;  2XT1 A;  1VQM P;  1YJN P;  3G1G A;  2N6Y A;  3CCL P;  1W2B O;  2JB0 A;  1K8A Q;  3CCS P;  4XFY A;  2BHV A;  2XZ1 C;  1VQ4 P;  4CA3 A;  1A43 A;  1DV5 A;  2KGA A;  2K0D X;  3LRY A;  1IMQ A;  2KR5 A;  3CCE P;  2FAC A;  2XXM A;  3DS4 A;  2ROQ A;  4XFZ A;  2FQ0 A;  2L22 A;  3G71 P;  1BXI A;  1E0H A;  4U0E A;  7CEI A;  1M6E X;  1UNK A;  2N98 A;  2VLP A;  2L0Q A;  5F2O A;  1AUM A;  4H2W C;  4U0C A;  2K0X A;  2KWL A;  1M6N A;  1GXG A;  1YIJ P;  2PEK A;  2Z44 A;  2JO0 A;  1KLP A;  2K0Y A;  2KOD A;  3HZQ A;  4U0D A; 
#chains in the Genus database with same CATH homology
 2FQ2 A;  2N6Z A;  2M5R A;  2LIW A;  2CGQ A;  2L9F A;  2MR7 A;  2GDX A;  2CNR A;  2FVA A;  2KG9 A;  2XZ0 D;  3GZM A;  2MD9 A;  2KGC A;  4BPH A;  2KG6 A;  2KOP A;  2JQ4 A;  2AFD A;  4R0M A;  2K94 A;  2KG8 A;  1L0I A;  2N5I A;  2VSQ A;  1ACP A;  4H2Y C;  1T8K A;  5HV8 A;  2MVU A;  3NY7 B;  4H2X C;  1AF8 A;  2GDW A;  2KGE A;  4HKG A;  2LKI A;  4PXH B;  5HVC A;  2CG5 B;  4BPF A;  2LL8 A;  2KGD A;  2KOS A;  2FQ1 A;  2N50 A;  5KP6 B;  2FAE A;  3RG2 A;  2FHS C;  2MR8 A;  2N5H A;  2LIU A;  2KOR A;  2N6Y A;  3EJD A;  3EJB A;  1L0H A;  2CQ8 A;  3LMO A;  4DG9 A;  1F80 D;  2XZ1 C;  4CA3 A;  2KW2 A;  2AF8 A;  2KGA A;  2DNW A;  1DV5 A;  2PNG A;  1X3O A;  2FVE A;  4BPG A;  3CE7 A;  2L4B A;  1NQ4 A;  2KR5 A;  2FAC A;  2EHT A;  5KP8 B;  2ROQ A;  2X2B A;  2MF4 A;  2LPK A;  2FQ0 A;  2MY5 A;  2AFE A;  1VKU A;  2JGP A;  2LML A;  2L22 A;  3EJE A;  2LOL A;  2JU2 A;  4MRT C;  2K92 A;  4NEO A;  5KP7 B;  1HQB A;  4IZ6 A;  2QNW A;  3GZL A;  2JU1 A;  2FAD A;  2AVA A;  2N98 A;  2LTE A;  2L0Q A;  4H2W C;  2EHS A;  2K93 A;  2K0X A;  2KWL A;  2KOQ A;  2GDY A;  4PWV B;  2FVF A;  2KOO A;  2MVV A;  1KLP A;  2K0Y A;  1HY8 A;  2K2Q A;  5EJD A;  5CZD B;  1DNY A;  1OR5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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