2KGDA

Nmr solution structures of 3-oxo-butyl-acp, an intermediate mimic from the actinorhodin polyketide synthase in streptomyces coelicolor
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
86
structure length
86
Chain Sequence
MATLLTTDDLRRALVESAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGALAEAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Biosynthetic protein
molecule keywords Actinorhodin polyketide synthase acyl carrier protein
publication title Probing the Interactions of Early Polyketide Intermediates with the Actinorhodin ACP from S. coelicolor A3(2).
pubmed doi rcsb
source organism Streptomyces coelicolor
total genus 26
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2009-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 2kgdA00
1X3OA 2LMLA 4BPFA 2GDXA 2LKIA 4NEOA 2XZ1C 3GZMA 4BPGA 4CA3A 1DV5A 2KR5A 2L0QA 2JGPA 4H2WC 2JU1A 3NY7B 2K0XA 1OR5A 2KG6A 4BPHA 2FVEA 2CG5B 2KGAA 2K0YA 2XZ0D 1HQBA 1VKUA 1L0IA 2LL8A 2L22A 1ACPA 2N50A 2LOLA 2EHTA 1L0HA 5KP8B 5CZDB 2KOQA 1KLPA 2KGDA 3EJEA 2GDWA 2M5RA 3EJBA 2MR7A 2GDYA 1DNYA 5HV8A 2DNWA 2N6YA 3EJDA 2L4BA 2PNGA 2N5HA 2MF4A 2FQ2A 4PXHB 2LIUA 3CE7A 2FQ1A 2LIWA 1AF8A 2K2QA 2KOOA 2N6ZA 2MY5A 2ROQA 2AFEA 2FADA 2AF8A 2CGQA 2KW2A 5KP7B 4H2YC 2K93A 5EJDA 2K94A 2CNRA 2K92A 4MRTC 2KG9A 2KORA 5KP6B 2KG8A 1F80D 2X2BA 2KGCA 2KOPA 2FACA 2FQ0A 2FVFA 2KGEA 3RG2A 2AFDA 2LPKA 2VSQA 2KWLA 2CQ8A 2JU2A 2MD9A 2FAEA 4HKGA 4R0MA 3GZLA 2FHSC 2KOSA 1T8KA 4H2XC 2N5IA 3LMOA 1NQ4A 2MVVA 2FVAA 2JQ4A 2EHSA 5HVCA 1HY8A 2LTEA 4PWVB 4IZ6A 2AVAA 2N98A 2QNWA 2MR8A 4DG9A 2MVUA 2L9FA
chains in the Genus database with same CATH superfamily
3CCQP 4NEOA 5I4TG 1VHNA 4BPGA 1DV5A 2PEKA 2JU1A 1BXIA 1OR5A 3H0DA 3B4QA 2GZGA 3CPWO 3CMEP 2OARA 3CCVP 2QA4P 2FVEA 1YJWP 1N8RQ 2VLPA 2K0YA 2EG5A 1VQOP 2XV6A 1YJNP 1A8OA 2M8LA 1KLPA 3CC4P 3EJEA 3LRYA 1DNYA 2JAZA 3H4EA 3HZQA 2L4BA 2N5HA 2MF4A 2VLOA 3CD6P 2FQ2A 1E6JP 4XROA 1K73Q 3GJNA 2ERHA 5DCKA 1YI2P 1YIJP 2PEQA 5KP7B 3U43A 2K93A 5EJDA 1BAJA 2K94A 2VLQA 2KG9A 2GZEA 5KP6B 1F80D 1RNIA 2KGCA 3CXCO 1ZNVA 2FVFA 1MZ8A 1Q86Q 3VRLC 1YHQP 2AFDA 2VSQA 3DS0A 5BS1A 2MD9A 3CCSP 1Q7YQ 2FHSC 4U0EA 2N5IA 1NQ4A 3G28A 2GZFA 2MVVA 2VLNA 1K30A 2JB0A 2LTEA 4XFXA 1VQNP 2Z44A 1VQ9P 3NTEA 3G1GA 4PWVB 5HGMA 2GYKA 2K5XA 2CWOA 3GZMA 2KR5A 2L0QA 1VQ7P 3GKLC 7CEIA 4F37A 5HGOA 4WYMA 3G71P 2EFJA 2BUOA 4BPHA 1S72P 2CG5B 1RO0A 2Z45A 2LL8A 4IPYA 1ACPA 2LOLA 2JBGA 1L0HA 3G0VA 5KP8B 2EIAA 2KGDA 2M5RA 2MR7A 3G26A 1KQSO 2N6YA 1M90Q 4PXHB 1AYIA 3CCRP 1AF8A 2OTLP 3RG6C 4U0DA 1VQMP 1QRJA 2MY5A 1VQKP 2FADA 1D1DA 2AF8A 2QEXP 2KW2A 2LF4A 1Z6MA 1GXGA 2KORA 2DGYA 2GZIA 2FQ0A 1IUQA 2KGEA 2CQ8A 4HKGA 3B5IA 3CCUP 2OTJP 2KOSA 2XT1A 5F2NA 1E0HA 1KD1Q 5EW5E 2EHSA 3G6EP 2PENA 1HY8A 1EMVA 3DS2A 2AVAA 4XFZA 2MR8A 4DG9A 2MVUA 2L9FA 2LMLA 2GDXA 2LKIA 1CEIA 1M74A 2GZJA 4H2WC 3NY7B 1QVFO 2K0XA 2PEOA 1GPJA 3Q20A 4U0FA 2KG6A 2JO0A 4GR2A 2KGAA 2XZ0D 1YJ9P 3I55P 1HQBA 2KODA 1L0IA 2M8PA 2L22A 1K8AQ 1M6NA 2EHTA 3G1IA 5CZDB 2KOQA 2Z46A 1VQLP 2GDWA 3EJBA 1Q81Q 2GDYA 3DS5A 3WBHA 1YITP 3I56P 2LIUA 2FQ1A 2N6ZA 4PH1A 3E2DA 3CCJP 1VQPP 2AFEA 1IMPA 1FR2A 5HGLA 3M1MA 2CNRA 4U0AA 2NO8A 1A43A 4MRTC 1EIAA 4QKOA 2M8NA 2KOPA 1EOQA 1VQ6P 3CC2P 3RG2A 4QNBA 2JU2A 3DPHA 5F2OA 4U0CA 2JQ4A 5HVCA 1RO2A 5F2KA 3MGEA 3P05A 4IZ6A 2N98A 2BHVA 1X3OA 4GR6A 4BPFA 3CC7P 2XZ1C 2JYLA 4CA3A 4COCA 3OW2O 2K0DX 2JGPA 3HYBA 2P9XA 3G4SP 1ZMBA 1M6EX 5JPAA 1VKUA 1VQ5P 2N50A 1QVGO 1JJ2O 4COPA 3G21A 2PY8A 4PH0A 1W2BO 5HV8A 4XFYA 2DNWA 3EJDA 2PNGA 4M0IA 3CE7A 2PEJA 2WPTA 1AUMA 2LIWA 2K2QA 2ONTA 2KOOA 1UNKA 2ROQA 1K9MQ 3CCMP 1KC8Q 4XRQA 2CGQA 3H47A 1VQ8P 3DS3A 4H2YC 2K92A 3G29A 2KG8A 2X2BA 2XXMA 2FACA 1M1KQ 2LPKA 2KWLA 4R0MA 3CCLP 1Q82Q 2FAEA 3GZLA 4U0BA 2PEMA 1VQ4P 1T8KA 4H2XC 3DS4A 3LMOA 3CCEP 2FVAA 3CMAP 1UJZA 2JYGA 1GXHA 3DTJA 4UHPB 2E1MA 2L6EA 1IMQA 3DS1A 5BS2A 2QNWA 5HGNA 1NJIQ 2PEIA
chains in the Genus database with same CATH topology
1X3OA 2LMLA 4BPFA 2GDXA 2LKIA 4NEOA 2XZ1C 3GZMA 4BPGA 4CA3A 1DV5A 2KR5A 2L0QA 2JGPA 4H2WC 2JU1A 3NY7B 2K0XA 1OR5A 2KG6A 4BPHA 2FVEA 2CG5B 2KGAA 2K0YA 2XZ0D 1HQBA 1VKUA 1L0IA 2LL8A 2L22A 1ACPA 2N50A 2LOLA 2EHTA 1L0HA 5KP8B 5CZDB 2KOQA 1KLPA 2KGDA 3EJEA 2GDWA 2M5RA 3EJBA 2MR7A 2GDYA 1DNYA 5HV8A 2DNWA 2N6YA 3EJDA 2L4BA 2PNGA 2N5HA 2MF4A 2FQ2A 4PXHB 2LIUA 3CE7A 2FQ1A 2LIWA 1AF8A 2K2QA 2KOOA 2N6ZA 2MY5A 2ROQA 2AFEA 2FADA 2AF8A 2CGQA 2KW2A 5KP7B 4H2YC 2K93A 5EJDA 2K94A 2CNRA 2K92A 4MRTC 2KG9A 2KORA 5KP6B 2KG8A 1F80D 2X2BA 2KGCA 2KOPA 2FACA 2FQ0A 2FVFA 2KGEA 3RG2A 2AFDA 2LPKA 2VSQA 2KWLA 2CQ8A 2JU2A 2MD9A 2FAEA 4HKGA 4R0MA 3GZLA 2FHSC 2KOSA 1T8KA 4H2XC 2N5IA 3LMOA 1NQ4A 2MVVA 2FVAA 2JQ4A 2EHSA 5HVCA 1HY8A 2LTEA 4PWVB 4IZ6A 2AVAA 2N98A 2QNWA 2MR8A 4DG9A 2MVUA 2L9FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X3O A;  2LML A;  4BPF A;  2GDX A;  2LKI A;  4NEO A;  2XZ1 C;  3GZM A;  4BPG A;  4CA3 A;  1DV5 A;  2KR5 A;  2L0Q A;  2JGP A;  4H2W C;  2JU1 A;  3NY7 B;  2K0X A;  1OR5 A;  2KG6 A;  4BPH A;  2FVE A;  2CG5 B;  2KGA A;  2K0Y A;  2XZ0 D;  1HQB A;  1VKU A;  1L0I A;  2LL8 A;  2L22 A;  1ACP A;  2N50 A;  2LOL A;  2EHT A;  1L0H A;  5KP8 B;  5CZD B;  2KOQ A;  1KLP A;  2KGD A;  3EJE A;  2GDW A;  2M5R A;  3EJB A;  2MR7 A;  2GDY A;  1DNY A;  5HV8 A;  2DNW A;  2N6Y A;  3EJD A;  2L4B A;  2PNG A;  2N5H A;  2MF4 A;  2FQ2 A;  4PXH B;  2LIU A;  3CE7 A;  2FQ1 A;  2LIW A;  1AF8 A;  2K2Q A;  2KOO A;  2N6Z A;  2MY5 A;  2ROQ A;  2AFE A;  2FAD A;  2AF8 A;  2CGQ A;  2KW2 A;  5KP7 B;  4H2Y C;  2K93 A;  5EJD A;  2K94 A;  2CNR A;  2K92 A;  4MRT C;  2KG9 A;  2KOR A;  5KP6 B;  2KG8 A;  1F80 D;  2X2B A;  2KGC A;  2KOP A;  2FAC A;  2FQ0 A;  2FVF A;  2KGE A;  3RG2 A;  2AFD A;  2LPK A;  2VSQ A;  2KWL A;  2CQ8 A;  2JU2 A;  2MD9 A;  2FAE A;  4HKG A;  4R0M A;  3GZL A;  2FHS C;  2KOS A;  1T8K A;  4H2X C;  2N5I A;  3LMO A;  1NQ4 A;  2MVV A;  2FVA A;  2JQ4 A;  2EHS A;  5HVC A;  1HY8 A;  2LTE A;  4PWV B;  4IZ6 A;  2AVA A;  2N98 A;  2QNW A;  2MR8 A;  4DG9 A;  2MVU A;  2L9F A; 
#chains in the Genus database with same CATH topology
 3CCQ P;  4NEO A;  5I4T G;  1VHN A;  4BPG A;  1DV5 A;  2PEK A;  2JU1 A;  1BXI A;  1OR5 A;  3H0D A;  3B4Q A;  2GZG A;  3CPW O;  3CME P;  2OAR A;  3CCV P;  2QA4 P;  2FVE A;  1YJW P;  1N8R Q;  2VLP A;  2K0Y A;  2EG5 A;  1VQO P;  2XV6 A;  1YJN P;  1A8O A;  2M8L A;  1KLP A;  3CC4 P;  3EJE A;  3LRY A;  1DNY A;  2JAZ A;  3H4E A;  3HZQ A;  2L4B A;  2N5H A;  2MF4 A;  2VLO A;  3CD6 P;  2FQ2 A;  1E6J P;  4XRO A;  1K73 Q;  3GJN A;  2ERH A;  5DCK A;  1YI2 P;  1YIJ P;  2PEQ A;  5KP7 B;  3U43 A;  2K93 A;  5EJD A;  1BAJ A;  2K94 A;  2VLQ A;  2KG9 A;  2GZE A;  5KP6 B;  1F80 D;  1RNI A;  2KGC A;  3CXC O;  1ZNV A;  2FVF A;  1MZ8 A;  1Q86 Q;  3VRL C;  1YHQ P;  2AFD A;  2VSQ A;  3DS0 A;  5BS1 A;  2MD9 A;  3CCS P;  1Q7Y Q;  2FHS C;  4U0E A;  2N5I A;  1NQ4 A;  3G28 A;  2GZF A;  2MVV A;  2VLN A;  1K30 A;  2JB0 A;  2LTE A;  4XFX A;  1VQN P;  2Z44 A;  1VQ9 P;  3NTE A;  3G1G A;  4PWV B;  5HGM A;  2GYK A;  2K5X A;  2CWO A;  3GZM A;  2KR5 A;  2L0Q A;  1VQ7 P;  3GKL C;  7CEI A;  4F37 A;  5HGO A;  4WYM A;  3G71 P;  2EFJ A;  2BUO A;  4BPH A;  1S72 P;  2CG5 B;  1RO0 A;  2Z45 A;  2LL8 A;  4IPY A;  1ACP A;  2LOL A;  2JBG A;  1L0H A;  3G0V A;  5KP8 B;  2EIA A;  2KGD A;  2M5R A;  2MR7 A;  3G26 A;  1KQS O;  2N6Y A;  1M90 Q;  4PXH B;  1AYI A;  3CCR P;  1AF8 A;  2OTL P;  3RG6 C;  4U0D A;  1VQM P;  1QRJ A;  2MY5 A;  1VQK P;  2FAD A;  1D1D A;  2AF8 A;  2QEX P;  2KW2 A;  2LF4 A;  1Z6M A;  1GXG A;  2KOR A;  2DGY A;  2GZI A;  2FQ0 A;  1IUQ A;  2KGE A;  2CQ8 A;  4HKG A;  3B5I A;  3CCU P;  2OTJ P;  2KOS A;  2XT1 A;  5F2N A;  1E0H A;  1KD1 Q;  5EW5 E;  2EHS A;  3G6E P;  2PEN A;  1HY8 A;  1EMV A;  3DS2 A;  2AVA A;  4XFZ A;  2MR8 A;  4DG9 A;  2MVU A;  2L9F A;  2LML A;  2GDX A;  2LKI A;  1CEI A;  1M74 A;  2GZJ A;  4H2W C;  3NY7 B;  1QVF O;  2K0X A;  2PEO A;  1GPJ A;  3Q20 A;  4U0F A;  2KG6 A;  2JO0 A;  4GR2 A;  2KGA A;  2XZ0 D;  1YJ9 P;  3I55 P;  1HQB A;  2KOD A;  1L0I A;  2M8P A;  2L22 A;  1K8A Q;  1M6N A;  2EHT A;  3G1I A;  5CZD B;  2KOQ A;  2Z46 A;  1VQL P;  2GDW A;  3EJB A;  1Q81 Q;  2GDY A;  3DS5 A;  3WBH A;  1YIT P;  3I56 P;  2LIU A;  2FQ1 A;  2N6Z A;  4PH1 A;  3E2D A;  3CCJ P;  1VQP P;  2AFE A;  1IMP A;  1FR2 A;  5HGL A;  3M1M A;  2CNR A;  4U0A A;  2NO8 A;  1A43 A;  4MRT C;  1EIA A;  4QKO A;  2M8N A;  2KOP A;  1EOQ A;  1VQ6 P;  3CC2 P;  3RG2 A;  4QNB A;  2JU2 A;  3DPH A;  5F2O A;  4U0C A;  2JQ4 A;  5HVC A;  1RO2 A;  5F2K A;  3MGE A;  3P05 A;  4IZ6 A;  2N98 A;  2BHV A;  1X3O A;  4GR6 A;  4BPF A;  3CC7 P;  2XZ1 C;  2JYL A;  4CA3 A;  4COC A;  3OW2 O;  2K0D X;  2JGP A;  3HYB A;  2P9X A;  3G4S P;  1ZMB A;  1M6E X;  5JPA A;  1VKU A;  1VQ5 P;  2N50 A;  1QVG O;  1JJ2 O;  4COP A;  3G21 A;  2PY8 A;  4PH0 A;  1W2B O;  5HV8 A;  4XFY A;  2DNW A;  3EJD A;  2PNG A;  4M0I A;  3CE7 A;  2PEJ A;  2WPT A;  1AUM A;  2LIW A;  2K2Q A;  2ONT A;  2KOO A;  1UNK A;  2ROQ A;  1K9M Q;  3CCM P;  1KC8 Q;  4XRQ A;  2CGQ A;  3H47 A;  1VQ8 P;  3DS3 A;  4H2Y C;  2K92 A;  3G29 A;  2KG8 A;  2X2B A;  2XXM A;  2FAC A;  1M1K Q;  2LPK A;  2KWL A;  4R0M A;  3CCL P;  1Q82 Q;  2FAE A;  3GZL A;  4U0B A;  2PEM A;  1VQ4 P;  1T8K A;  4H2X C;  3DS4 A;  3LMO A;  3CCE P;  2FVA A;  3CMA P;  1UJZ A;  2JYG A;  1GXH A;  3DTJ A;  4UHP B;  2E1M A;  2L6E A;  1IMQ A;  3DS1 A;  5BS2 A;  2QNW A;  5HGN A;  1NJI Q;  2PEI A; 
#chains in the Genus database with same CATH homology
 1X3O A;  2LML A;  4BPF A;  2GDX A;  2LKI A;  4NEO A;  2XZ1 C;  3GZM A;  4BPG A;  4CA3 A;  1DV5 A;  2KR5 A;  2L0Q A;  2JGP A;  4H2W C;  2JU1 A;  3NY7 B;  2K0X A;  1OR5 A;  2KG6 A;  4BPH A;  2FVE A;  2CG5 B;  2KGA A;  2K0Y A;  2XZ0 D;  1HQB A;  1VKU A;  1L0I A;  2LL8 A;  2L22 A;  1ACP A;  2N50 A;  2LOL A;  2EHT A;  1L0H A;  5KP8 B;  5CZD B;  2KOQ A;  1KLP A;  2KGD A;  3EJE A;  2GDW A;  2M5R A;  3EJB A;  2MR7 A;  2GDY A;  1DNY A;  5HV8 A;  2DNW A;  2N6Y A;  3EJD A;  2L4B A;  2PNG A;  2N5H A;  2MF4 A;  2FQ2 A;  4PXH B;  2LIU A;  3CE7 A;  2FQ1 A;  2LIW A;  1AF8 A;  2K2Q A;  2KOO A;  2N6Z A;  2MY5 A;  2ROQ A;  2AFE A;  2FAD A;  2AF8 A;  2CGQ A;  2KW2 A;  5KP7 B;  4H2Y C;  2K93 A;  5EJD A;  2K94 A;  2CNR A;  2K92 A;  4MRT C;  2KG9 A;  2KOR A;  5KP6 B;  2KG8 A;  1F80 D;  2X2B A;  2KGC A;  2KOP A;  2FAC A;  2FQ0 A;  2FVF A;  2KGE A;  3RG2 A;  2AFD A;  2LPK A;  2VSQ A;  2KWL A;  2CQ8 A;  2JU2 A;  2MD9 A;  2FAE A;  4HKG A;  4R0M A;  3GZL A;  2FHS C;  2KOS A;  1T8K A;  4H2X C;  2N5I A;  3LMO A;  1NQ4 A;  2MVV A;  2FVA A;  2JQ4 A;  2EHS A;  5HVC A;  1HY8 A;  2LTE A;  4PWV B;  4IZ6 A;  2AVA A;  2N98 A;  2QNW A;  2MR8 A;  4DG9 A;  2MVU A;  2L9F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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