2Z44A

Crystal structure of selenomethionine-labeled orf134
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
110
structure length
110
Chain Sequence
EFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
source organism Synechococcus sp.
publication title Crystal Structure of ORF134
rcsb
molecule keywords ORF134
total genus 41
structure length 110
sequence length 110
ec nomenclature
pdb deposition date 2007-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02341 RcbX RbcX protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.210 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2z44A00
2PENA 2PEJA 3HYBA 3RG6C 4GR6A 3Q20A 2Z44A 2PY8A 5BS1A 2PEIA 5BS2A 2PEKA 2Z46A 2PEOA 4GR2A 2PEMA 2Z45A 2PEQA
chains in the Genus database with same CATH superfamily
1NJIQ 3Q20A 4XFYA 2M8NA 3DS2A 3P05A 1VQPP 1BXIA 2DGYA 3OW2O 4GR6A 2E1MA 1KLPA 2FQ2A 1W2BO 2K5XA 3M1MA 1KQSO 2LTEA 2MD9A 2ONTA 1RO2A 3NTEA 3VRLC 2PEJA 2KORA 2MVUA 2KR5A 1GPJA 4BPFA 1GXHA 5HGOA 2GZJA 2PEKA 3CCQP 2MY5A 2FAEA 2PEMA 4XFZA 2KGEA 5F2NA 2KGAA 2L4BA 4U0AA 2AFDA 2M5RA 1Q86Q 2EHSA 1VQ4P 2GZFA 3DTJA 2KODA 2Z46A 2GZGA 1K73Q 2LOLA 3GZLA 1X3OA 4MRTC 2CG5B 2MF4A 4GR2A 5KP7B 4U0BA 4PH0A 2EIAA 1ZMBA 3GZMA 1ACPA 2GDXA 1RNIA 3EJEA 2FVFA 2K0DX 2XXMA 1AUMA 3RG2A 2JB0A 3G71P 2FHSC 4IZ6A 2LF4A 1YJNP 2N6YA 2JU2A 2JU1A 2AVAA 1GXGA 5I4TG 1MZ8A 4M0IA 2KOQA 2KOSA 1IMQA 3G6EP 3GKLC 1A8OA 1Q7YQ 1YIJP 2KG8A 2VLNA 3NY7B 1M74A 2K93A 2ROQA 3CXCO 1K8AQ 3DS0A 2K94A 2PEQA 1DV5A 2N5IA 1DNYA 1Q82Q 1M90Q 3U43A 2N6ZA 2EG5A 1QVFO 2FVEA 3G1GA 1VQ9P 1L0IA 2DNWA 1HY8A 5CZDB 1QVGO 1VQLP 1YJ9P 1NQ4A 1IMPA 1BAJA 2VLQA 5EJDA 2QEXP 2OTLP 2PEIA 1M6EX 3CCRP 2OARA 4XFXA 2VSQA 2NO8A 2KW2A 1AYIA 2BUOA 2EHTA 1Q81Q 3G26A 2CGQA 2MR7A 1YJWP 3CMEP 3HZQA 1KC8Q 1VKUA 4XROA 2P9XA 3LRYA 1CEIA 2FADA 3G4SP 2K92A 3CCSP 2XT1A 1EIAA 5F2OA 1OR5A 1F80D 1VQMP 2KG6A 2K2QA 1UNKA 3CCMP 4CA3A 4H2XC 1M6NA 1E6JP 1JJ2O 2L9FA 1IUQA 3B5IA 2PENA 2XZ0D 4XRQA 3CCVP 2M8PA 2CWOA 3CCLP 2LIWA 3H4EA 2AF8A 1L0HA 2PEOA 1Z6MA 4H2WC 1KD1Q 2JO0A 2OTJP 3CD6P 2GYKA 1T8KA 2JQ4A 2L22A 3G21A 5KP6B 4COPA 1VQ8P 3CC2P 3HYBA 2CNRA 3H0DA 2N50A 2MR8A 3RG6C 1EMVA 1VQNP 1A43A 2PY8A 2KGDA 2XV6A 2JAZA 2QA4P 2KG9A 2FVAA 2LIUA 2K0XA 1HQBA 4F37A 2MVVA 1QRJA 7CEIA 2ERHA 1D1DA 3CC4P 2N5HA 1K30A 1ZNVA 3B4QA 5HGMA 2LKIA 2Z45A 1YITP 1S72P 3G0VA 2AFEA 3DS4A 3G29A 2XZ1C 3CC7P 3G28A 1EOQA 3H47A 2GDWA 1VQ5P 5JPAA 2GZEA 3I56P 4WYMA 5F2KA 1K9MQ 4QKOA 1VQ7P 2KOOA 4IPYA 3CMAP 2LPKA 4U0CA 3CCEP 3DS5A 2LL8A 2X2BA 4NEOA 1AF8A 2VLOA 3E2DA 2PNGA 2FQ1A 2JBGA 4UHPB 3DS3A 2GZIA 2K0YA 3CCJP 5DCKA 1FR2A 2GDYA 2LMLA 4U0EA 1VHNA 5EW5E 2EFJA 3MGEA 3GJNA 1YHQP 4QNBA 1E0HA 3DS1A 3EJBA 2CQ8A 2JYGA 4R0MA 4PXHB 4DG9A 4COCA 3I55P 4H2YC 2Z44A 4HKGA 1UJZA 4U0DA 1N8RQ 1VQ6P 1YI2P 2JGPA 2JYLA 5HGLA 2M8LA 5HVCA 4BPGA 2KGCA 3G1IA 5HV8A 2FACA 2VLPA 2FQ0A 3CE7A 4PH1A 2L6EA 2WPTA 2L0QA 5BS1A 3DPHA 5BS2A 2KWLA 5HGNA 3WBHA 5KP8B 4U0FA 1VQKP 3LMOA 2N98A 4BPHA 1RO0A 2QNWA 2KOPA 4PWVB 3CPWO 1M1KQ 3EJDA 1VQOP 2BHVA 3CCUP
chains in the Genus database with same CATH topology
1YIJP 1NJIQ 3CCVP 3Q20A 3E2DA 2M8PA 4XFYA 2M8NA 3DS2A 2CWOA 3P05A 1VQPP 1M74A 2DGYA 3OW2O 3CCLP 3H4EA 4GR6A 3CXCO 1K8AQ 3DS0A 3DS3A 1Q7YQ 2E1MA 1W2BO 2PEOA 3CCJP 3M1MA 2PEQA 1KQSO 1KD1Q 5DCKA 2ONTA 2JO0A 1RO2A 3NTEA 2OTJP 3CD6P 3VRLC 4U0EA 2PEJA 1Q82Q 1M90Q 2EG5A 1QVFO 3G21A 2EFJA 3G1GA 1VQ9P 3MGEA 4COPA 1YHQP 1QVGO 5HGOA 1VQLP 1YJ9P 2PEKA 1VQ8P 4QNBA 3DS1A 3CC2P 2JYGA 3CCQP 3HYBA 1BAJA 3H0DA 4COCA 3I55P 3RG6C 2PEMA 1VQNP 4XFZA 5F2NA 1A43A 2QEXP 2OTLP 2PY8A 2PEIA 1M6EX 3CCRP 2OARA 4U0AA 2XV6A 1Q86Q 1VQ4P 2QA4P 4XFXA 2Z44A 3DTJA 4U0DA 2KODA 2Z46A 1K73Q 2BUOA 1N8RQ 1VQ6P 1QRJA 1YI2P 1D1DA 4GR2A 2JYLA 1Q81Q 3CC4P 5HGLA 4U0BA 3G26A 2M8LA 1K30A 5HGMA 2EIAA 4PH0A 3G1IA 1YJWP 2Z45A 3HZQA 1YITP 3CMEP 1KC8Q 4XROA 1S72P 1ZMBA 2P9XA 3G0VA 3LRYA 3DS4A 3G4SP 3G29A 1RNIA 3CCSP 2XT1A 3CC7P 4PH1A 3G28A 2L6EA 1EOQA 2XXMA 1EIAA 5F2OA 3H47A 1AUMA 1VQMP 3G71P 5BS1A 1YJNP 2LF4A 1VQ5P 3DPHA 5BS2A 5JPAA 3I56P 3CCMP 4WYMA 1M6NA 5F2KA 5HGNA 5I4TG 1K9MQ 3WBHA 1E6JP 4U0FA 4M0IA 1VQKP 1VQ7P 4IPYA 1JJ2O 1IUQA 1RO0A 3CMAP 3G6EP 3B5IA 2PENA 4U0CA 3CPWO 1M1KQ 1A8OA 3CCEP 3DS5A 1VQOP 2BHVA 4XRQA 3CCUP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PEN A;  2PEJ A;  3HYB A;  3RG6 C;  4GR6 A;  3Q20 A;  2Z44 A;  2PY8 A;  5BS1 A;  2PEI A;  5BS2 A;  2PEK A;  2Z46 A;  2PEO A;  4GR2 A;  2PEM A;  2Z45 A;  2PEQ A; 
#chains in the Genus database with same CATH topology
 1NJI Q;  3Q20 A;  4XFY A;  2M8N A;  3DS2 A;  3P05 A;  1VQP P;  1BXI A;  2DGY A;  3OW2 O;  4GR6 A;  2E1M A;  1KLP A;  2FQ2 A;  1W2B O;  2K5X A;  3M1M A;  1KQS O;  2LTE A;  2MD9 A;  2ONT A;  1RO2 A;  3NTE A;  3VRL C;  2PEJ A;  2KOR A;  2MVU A;  2KR5 A;  1GPJ A;  4BPF A;  1GXH A;  5HGO A;  2GZJ A;  2PEK A;  3CCQ P;  2MY5 A;  2FAE A;  2PEM A;  4XFZ A;  2KGE A;  5F2N A;  2KGA A;  2L4B A;  4U0A A;  2AFD A;  2M5R A;  1Q86 Q;  2EHS A;  1VQ4 P;  2GZF A;  3DTJ A;  2KOD A;  2Z46 A;  2GZG A;  1K73 Q;  2LOL A;  3GZL A;  1X3O A;  4MRT C;  2CG5 B;  2MF4 A;  4GR2 A;  5KP7 B;  4U0B A;  4PH0 A;  2EIA A;  1ZMB A;  3GZM A;  1ACP A;  2GDX A;  1RNI A;  3EJE A;  2FVF A;  2K0D X;  2XXM A;  1AUM A;  3RG2 A;  2JB0 A;  3G71 P;  2FHS C;  4IZ6 A;  2LF4 A;  1YJN P;  2N6Y A;  2JU2 A;  2JU1 A;  2AVA A;  1GXG A;  5I4T G;  1MZ8 A;  4M0I A;  2KOQ A;  2KOS A;  1IMQ A;  3G6E P;  3GKL C;  1A8O A;  1Q7Y Q;  1YIJ P;  2KG8 A;  2VLN A;  3NY7 B;  1M74 A;  2K93 A;  2ROQ A;  3CXC O;  1K8A Q;  3DS0 A;  2K94 A;  2PEQ A;  1DV5 A;  2N5I A;  1DNY A;  1Q82 Q;  1M90 Q;  3U43 A;  2N6Z A;  2EG5 A;  1QVF O;  2FVE A;  3G1G A;  1VQ9 P;  1L0I A;  2DNW A;  1HY8 A;  5CZD B;  1QVG O;  1VQL P;  1YJ9 P;  1NQ4 A;  1IMP A;  1BAJ A;  2VLQ A;  5EJD A;  2QEX P;  2OTL P;  2PEI A;  1M6E X;  3CCR P;  2OAR A;  4XFX A;  2VSQ A;  2NO8 A;  2KW2 A;  1AYI A;  2BUO A;  2EHT A;  1Q81 Q;  3G26 A;  2CGQ A;  2MR7 A;  1YJW P;  3CME P;  3HZQ A;  1KC8 Q;  1VKU A;  4XRO A;  2P9X A;  3LRY A;  1CEI A;  2FAD A;  3G4S P;  2K92 A;  3CCS P;  2XT1 A;  1EIA A;  5F2O A;  1OR5 A;  1F80 D;  1VQM P;  2KG6 A;  2K2Q A;  1UNK A;  3CCM P;  4CA3 A;  4H2X C;  1M6N A;  1E6J P;  1JJ2 O;  2L9F A;  1IUQ A;  3B5I A;  2PEN A;  2XZ0 D;  4XRQ A;  3CCV P;  2M8P A;  2CWO A;  3CCL P;  2LIW A;  3H4E A;  2AF8 A;  1L0H A;  2PEO A;  1Z6M A;  4H2W C;  1KD1 Q;  2JO0 A;  2OTJ P;  3CD6 P;  2GYK A;  1T8K A;  2JQ4 A;  2L22 A;  3G21 A;  5KP6 B;  4COP A;  1VQ8 P;  3CC2 P;  3HYB A;  2CNR A;  3H0D A;  2N50 A;  2MR8 A;  3RG6 C;  1EMV A;  1VQN P;  1A43 A;  2PY8 A;  2KGD A;  2XV6 A;  2JAZ A;  2QA4 P;  2KG9 A;  2FVA A;  2LIU A;  2K0X A;  1HQB A;  4F37 A;  2MVV A;  1QRJ A;  7CEI A;  2ERH A;  1D1D A;  3CC4 P;  2N5H A;  1K30 A;  1ZNV A;  3B4Q A;  5HGM A;  2LKI A;  2Z45 A;  1YIT P;  1S72 P;  3G0V A;  2AFE A;  3DS4 A;  3G29 A;  2XZ1 C;  3CC7 P;  3G28 A;  1EOQ A;  3H47 A;  2GDW A;  1VQ5 P;  5JPA A;  2GZE A;  3I56 P;  4WYM A;  5F2K A;  1K9M Q;  4QKO A;  1VQ7 P;  2KOO A;  4IPY A;  3CMA P;  2LPK A;  4U0C A;  3CCE P;  3DS5 A;  2LL8 A;  2X2B A;  4NEO A;  1AF8 A;  2VLO A;  3E2D A;  2PNG A;  2FQ1 A;  2JBG A;  4UHP B;  3DS3 A;  2GZI A;  2K0Y A;  3CCJ P;  5DCK A;  1FR2 A;  2GDY A;  2LML A;  4U0E A;  1VHN A;  5EW5 E;  2EFJ A;  3MGE A;  3GJN A;  1YHQ P;  4QNB A;  1E0H A;  3DS1 A;  3EJB A;  2CQ8 A;  2JYG A;  4R0M A;  4PXH B;  4DG9 A;  4COC A;  3I55 P;  4H2Y C;  2Z44 A;  4HKG A;  1UJZ A;  4U0D A;  1N8R Q;  1VQ6 P;  1YI2 P;  2JGP A;  2JYL A;  5HGL A;  2M8L A;  5HVC A;  4BPG A;  2KGC A;  3G1I A;  5HV8 A;  2FAC A;  2VLP A;  2FQ0 A;  3CE7 A;  4PH1 A;  2L6E A;  2WPT A;  2L0Q A;  5BS1 A;  3DPH A;  5BS2 A;  2KWL A;  5HGN A;  3WBH A;  5KP8 B;  4U0F A;  1VQK P;  3LMO A;  2N98 A;  4BPH A;  1RO0 A;  2QNW A;  2KOP A;  4PWV B;  3CPW O;  1M1K Q;  3EJD A;  1VQO P;  2BHV A;  3CCU P; 
#chains in the Genus database with same CATH homology
 1YIJ P;  1NJI Q;  3CCV P;  3Q20 A;  3E2D A;  2M8P A;  4XFY A;  2M8N A;  3DS2 A;  2CWO A;  3P05 A;  1VQP P;  1M74 A;  2DGY A;  3OW2 O;  3CCL P;  3H4E A;  4GR6 A;  3CXC O;  1K8A Q;  3DS0 A;  3DS3 A;  1Q7Y Q;  2E1M A;  1W2B O;  2PEO A;  3CCJ P;  3M1M A;  2PEQ A;  1KQS O;  1KD1 Q;  5DCK A;  2ONT A;  2JO0 A;  1RO2 A;  3NTE A;  2OTJ P;  3CD6 P;  3VRL C;  4U0E A;  2PEJ A;  1Q82 Q;  1M90 Q;  2EG5 A;  1QVF O;  3G21 A;  2EFJ A;  3G1G A;  1VQ9 P;  3MGE A;  4COP A;  1YHQ P;  1QVG O;  5HGO A;  1VQL P;  1YJ9 P;  2PEK A;  1VQ8 P;  4QNB A;  3DS1 A;  3CC2 P;  2JYG A;  3CCQ P;  3HYB A;  1BAJ A;  3H0D A;  4COC A;  3I55 P;  3RG6 C;  2PEM A;  1VQN P;  4XFZ A;  5F2N A;  1A43 A;  2QEX P;  2OTL P;  2PY8 A;  2PEI A;  1M6E X;  3CCR P;  2OAR A;  4U0A A;  2XV6 A;  1Q86 Q;  1VQ4 P;  2QA4 P;  4XFX A;  2Z44 A;  3DTJ A;  4U0D A;  2KOD A;  2Z46 A;  1K73 Q;  2BUO A;  1N8R Q;  1VQ6 P;  1QRJ A;  1YI2 P;  1D1D A;  4GR2 A;  2JYL A;  1Q81 Q;  3CC4 P;  5HGL A;  4U0B A;  3G26 A;  2M8L A;  1K30 A;  5HGM A;  2EIA A;  4PH0 A;  3G1I A;  1YJW P;  2Z45 A;  3HZQ A;  1YIT P;  3CME P;  1KC8 Q;  4XRO A;  1S72 P;  1ZMB A;  2P9X A;  3G0V A;  3LRY A;  3DS4 A;  3G4S P;  3G29 A;  1RNI A;  3CCS P;  2XT1 A;  3CC7 P;  4PH1 A;  3G28 A;  2L6E A;  1EOQ A;  2XXM A;  1EIA A;  5F2O A;  3H47 A;  1AUM A;  1VQM P;  3G71 P;  5BS1 A;  1YJN P;  2LF4 A;  1VQ5 P;  3DPH A;  5BS2 A;  5JPA A;  3I56 P;  3CCM P;  4WYM A;  1M6N A;  5F2K A;  5HGN A;  5I4T G;  1K9M Q;  3WBH A;  1E6J P;  4U0F A;  4M0I A;  1VQK P;  1VQ7 P;  4IPY A;  1JJ2 O;  1IUQ A;  1RO0 A;  3CMA P;  3G6E P;  3B5I A;  2PEN A;  4U0C A;  3CPW O;  1M1K Q;  1A8O A;  3CCE P;  3DS5 A;  1VQO P;  2BHV A;  4XRQ A;  3CCU P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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