2Z44A

Crystal structure of selenomethionine-labeled orf134
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
110
structure length
110
Chain Sequence
EFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ORF134
publication title Crystal Structure of ORF134
rcsb
source organism Synechococcus sp.
molecule tags Chaperone
total genus 41
structure length 110
sequence length 110
ec nomenclature
pdb deposition date 2007-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02341 RcbX RbcX protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.210 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2z44A00
5BS2A 2PY8A 2PEMA 3Q20A 2PEKA 2Z45A 4GR6A 2PEOA 2PEIA 2Z46A 3RG6C 5BS1A 2PEJA 3HYBA 4GR2A 2PENA 2Z44A 2PEQA
chains in the Genus database with same CATH superfamily
4UHPB 1ZMBA 3OW2O 2QEXP 5KP6B 1OR5A 2JAZA 2CGQA 3DS3A 3LMOA 2CNRA 2L22A 1F80D 3HYBA 3G21A 2QNWA 1ACPA 2JYGA 2WPTA 4H2YC 4PXHB 2KOQA 5F2KA 1K73Q 2K92A 1K30A 2L6EA 3CCEP 1AF8A 2GYKA 2EHSA 1KLPA 2PEOA 5JPAA 4F37A 1UJZA 2FADA 2FHSC 2K0DX 2FVAA 3HZQA 4GR6A 4M0IA 1M1KQ 2LL8A 1CEIA 3Q20A 3CCUP 1YI2P 1YJWP 2EFJA 2LMLA 1VQMP 2GZIA 1A43A 2ONTA 1VQKP 2DNWA 1IMQA 1YJNP 3MGEA 2QA4P 1MZ8A 2LIWA 3DTJA 2L0QA 2ROQA 1YHQP 4BPGA 2PENA 4U0BA 2X2BA 4CA3A 1QVFO 2KGCA 1VQ6P 1Q82Q 2LIUA 1HQBA 1KC8Q 3VRLC 3CMEP 2N50A 1YJ9P 3LRYA 1L0HA 2PEIA 3H47A 2L9FA 2XT1A 4GR2A 2N5IA 2DGYA 2NO8A 3H4EA 2KR5A 1BAJA 1D1DA 4PWVB 2PEJA 4R0MA 1RNIA 2M8PA 1T8KA 1YIJP 2GDXA 2N5HA 2FVFA 2N6ZA 1KD1Q 1Q86Q 1Z6MA 2JO0A 3CC4P 3CMAP 1VHNA 1IUQA 4PH1A 2M5RA 5KP7B 1A8OA 4COPA 5HGOA 1M6EX 3DS4A 5DCKA 3EJBA 1VQ8P 5HGMA 1L0IA 7CEIA 3RG6C 2AVAA 2N6YA 1W2BO 3M1MA 4BPFA 4COCA 1AUMA 1QRJA 2MR7A 3EJEA 1HY8A 4U0DA 1IMPA 2VLQA 5HVCA 2FACA 2GDYA 3CCJP 4U0FA 3CCRP 2PNGA 2LF4A 4XRQA 2BUOA 1GXGA 2JBGA 1DNYA 2XZ0D 3CPWO 1VQ5P 3G28A 1GPJA 3DS1A 2XZ1C 2MD9A 5HGLA 2K93A 1VQNP 1VQ9P 2FAEA 2PY8A 1DV5A 1UNKA 3G4SP 3G1IA 3DS2A 2KGDA 2KW2A 2K2QA 2GZJA 1Q7YQ 3G1GA 4QNBA 2PEMA 5CZDB 3GZMA 3DS5A 2KOPA 2MR8A 5BS2A 4U0AA 1AYIA 2AF8A 1FR2A 2LKIA 4XFYA 2M8NA 5EW5E 3CC2P 2GZEA 2GZGA 1GXHA 3E2DA 4HKGA 2OARA 1RO0A 2PEKA 2ERHA 1X3OA 1S72P 4XROA 1KQSO 3H0DA 1NQ4A 1M6NA 4WYMA 2LOLA 2OTLP 3G71P 3GKLC 5HGNA 5I4TG 2FVEA 3CCLP 2CQ8A 3I56P 2MVVA 2VLPA 2Z44A 1E0HA 2MF4A 2L4BA 4U0CA 3B4QA 1EOQA 2KOOA 2XV6A 3WBHA 1EMVA 4IZ6A 2KODA 4XFZA 3CCMP 3CD6P 2KWLA 4PH0A 4U0EA 1VKUA 2BHVA 2VSQA 4NEOA 3G26A 5KP8B 4BPHA 2FQ1A 1E6JP 4H2WC 3GZLA 2VLOA 2Z45A 1EIAA 2EIAA 3G6EP 1NJIQ 1ZNVA 3CE7A 3CCQP 5BS1A 3EJDA 2KORA 2JU2A 2GZFA 1M74A 2XXMA 2E1MA 1VQ4P 2K0YA 2JYLA 3CCVP 2M8LA 4IPYA 4MRTC 2MY5A 2P9XA 1JJ2O 2K0XA 2KOSA 1Q81Q 3DS0A 5EJDA 2K94A 2GDWA 3CC7P 2AFDA 3B5IA 2Z46A 2KGEA 4DG9A 1RO2A 2VLNA 2KG8A 2KG9A 2KG6A 1VQPP 2KGAA 5F2OA 3P05A 4QKOA 2PEQA 2MVUA 2JGPA 4H2XC 2FQ2A 3I55P 2N98A 3G29A 1VQ7P 2OTJP 2AFEA 2CG5B 3G0VA 3CXCO 1N8RQ 2LPKA 3GJNA 1YITP 2JU1A 3RG2A 5F2NA 5HV8A 1M90Q 2EHTA 1QVGO 2EG5A 1BXIA 1VQLP 2JQ4A 1VQOP 3U43A 2K5XA 1K9MQ 2LTEA 3NY7B 1K8AQ 2JB0A 3NTEA 2CWOA 3CCSP 4XFXA 3DPHA 2FQ0A
chains in the Genus database with same CATH topology
1NJIQ 2PY8A 1ZMBA 3CMEP 3G4SP 3G1IA 3DS2A 1YJ9P 3OW2O 2QEXP 3CCQP 3LRYA 2PEIA 3DS3A 5BS1A 3H47A 1M74A 2XXMA 2E1MA 1VQ4P 1Q7YQ 3HYBA 2XT1A 2JYLA 3G1GA 3G21A 4GR2A 2DGYA 4QNBA 3CCVP 2M8LA 2PEMA 3H4EA 4IPYA 3DS5A 2JYGA 2P9XA 5BS2A 1JJ2O 1BAJA 1D1DA 4U0AA 1Q81Q 2PEJA 3DS0A 1RNIA 4XFYA 2M8NA 3CC2P 5F2KA 1K73Q 2M8PA 3E2DA 1YIJP 3CC7P 3B5IA 1K30A 2OARA 2L6EA 1RO0A 2PEKA 2Z46A 1KD1Q 3CCEP 1Q86Q 1RO2A 2JO0A 3CC4P 1S72P 3CMAP 4XROA 2PEOA 1VQPP 5F2OA 5JPAA 1KQSO 1IUQA 3P05A 4PH1A 3H0DA 1M6NA 2PEQA 1A8OA 4WYMA 3I55P 4COPA 3G29A 5HGOA 2OTLP 1M6EX 1VQ7P 3G71P 2OTJP 3DS4A 5DCKA 3HZQA 1VQ8P 5HGMA 5HGNA 4GR6A 3RG6C 4M0IA 3G0VA 5I4TG 1M1KQ 3CXCO 1W2BO 1N8RQ 3CCLP 3M1MA 3Q20A 1YITP 3CCUP 1YI2P 1YJWP 2EFJA 3I56P 2Z44A 1VQMP 5F2NA 1A43A 4COCA 1AUMA 2ONTA 1QRJA 1M90Q 1QVGO 4U0CA 1VQKP 1EOQA 4U0DA 1YJNP 3MGEA 2EG5A 1VQLP 2QA4P 2XV6A 3WBHA 3DTJA 3CCJP 1VQOP 4U0FA 3CCRP 1K9MQ 2LF4A 4XRQA 2BUOA 2KODA 1YHQP 4XFZA 3CCMP 3CD6P 2PENA 4PH0A 4U0EA 1K8AQ 3NTEA 2BHVA 3G26A 4U0BA 2CWOA 3CPWO 1VQ5P 1QVFO 3G28A 3CCSP 1E6JP 3DS1A 4XFXA 1VQ6P 3DPHA 5HGLA 2Z45A 1EIAA 2EIAA 1Q82Q 3G6EP 1VQNP 1VQ9P 1KC8Q 3VRLC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BS2 A;  2PY8 A;  2PEM A;  3Q20 A;  2PEK A;  2Z45 A;  4GR6 A;  2PEO A;  2PEI A;  2Z46 A;  3RG6 C;  5BS1 A;  2PEJ A;  3HYB A;  4GR2 A;  2PEN A;  2Z44 A;  2PEQ A; 
#chains in the Genus database with same CATH topology
 4UHP B;  1ZMB A;  3OW2 O;  2QEX P;  5KP6 B;  1OR5 A;  2JAZ A;  2CGQ A;  3DS3 A;  3LMO A;  2CNR A;  2L22 A;  1F80 D;  3HYB A;  3G21 A;  2QNW A;  1ACP A;  2JYG A;  2WPT A;  4H2Y C;  4PXH B;  2KOQ A;  5F2K A;  1K73 Q;  2K92 A;  1K30 A;  2L6E A;  3CCE P;  1AF8 A;  2GYK A;  2EHS A;  1KLP A;  2PEO A;  5JPA A;  4F37 A;  1UJZ A;  2FAD A;  2FHS C;  2K0D X;  2FVA A;  3HZQ A;  4GR6 A;  4M0I A;  1M1K Q;  2LL8 A;  1CEI A;  3Q20 A;  3CCU P;  1YI2 P;  1YJW P;  2EFJ A;  2LML A;  1VQM P;  2GZI A;  1A43 A;  2ONT A;  1VQK P;  2DNW A;  1IMQ A;  1YJN P;  3MGE A;  2QA4 P;  1MZ8 A;  2LIW A;  3DTJ A;  2L0Q A;  2ROQ A;  1YHQ P;  4BPG A;  2PEN A;  4U0B A;  2X2B A;  4CA3 A;  1QVF O;  2KGC A;  1VQ6 P;  1Q82 Q;  2LIU A;  1HQB A;  1KC8 Q;  3VRL C;  3CME P;  2N50 A;  1YJ9 P;  3LRY A;  1L0H A;  2PEI A;  3H47 A;  2L9F A;  2XT1 A;  4GR2 A;  2N5I A;  2DGY A;  2NO8 A;  3H4E A;  2KR5 A;  1BAJ A;  1D1D A;  4PWV B;  2PEJ A;  4R0M A;  1RNI A;  2M8P A;  1T8K A;  1YIJ P;  2GDX A;  2N5H A;  2FVF A;  2N6Z A;  1KD1 Q;  1Q86 Q;  1Z6M A;  2JO0 A;  3CC4 P;  3CMA P;  1VHN A;  1IUQ A;  4PH1 A;  2M5R A;  5KP7 B;  1A8O A;  4COP A;  5HGO A;  1M6E X;  3DS4 A;  5DCK A;  3EJB A;  1VQ8 P;  5HGM A;  1L0I A;  7CEI A;  3RG6 C;  2AVA A;  2N6Y A;  1W2B O;  3M1M A;  4BPF A;  4COC A;  1AUM A;  1QRJ A;  2MR7 A;  3EJE A;  1HY8 A;  4U0D A;  1IMP A;  2VLQ A;  5HVC A;  2FAC A;  2GDY A;  3CCJ P;  4U0F A;  3CCR P;  2PNG A;  2LF4 A;  4XRQ A;  2BUO A;  1GXG A;  2JBG A;  1DNY A;  2XZ0 D;  3CPW O;  1VQ5 P;  3G28 A;  1GPJ A;  3DS1 A;  2XZ1 C;  2MD9 A;  5HGL A;  2K93 A;  1VQN P;  1VQ9 P;  2FAE A;  2PY8 A;  1DV5 A;  1UNK A;  3G4S P;  3G1I A;  3DS2 A;  2KGD A;  2KW2 A;  2K2Q A;  2GZJ A;  1Q7Y Q;  3G1G A;  4QNB A;  2PEM A;  5CZD B;  3GZM A;  3DS5 A;  2KOP A;  2MR8 A;  5BS2 A;  4U0A A;  1AYI A;  2AF8 A;  1FR2 A;  2LKI A;  4XFY A;  2M8N A;  5EW5 E;  3CC2 P;  2GZE A;  2GZG A;  1GXH A;  3E2D A;  4HKG A;  2OAR A;  1RO0 A;  2PEK A;  2ERH A;  1X3O A;  1S72 P;  4XRO A;  1KQS O;  3H0D A;  1NQ4 A;  1M6N A;  4WYM A;  2LOL A;  2OTL P;  3G71 P;  3GKL C;  5HGN A;  5I4T G;  2FVE A;  3CCL P;  2CQ8 A;  3I56 P;  2MVV A;  2VLP A;  2Z44 A;  1E0H A;  2MF4 A;  2L4B A;  4U0C A;  3B4Q A;  1EOQ A;  2KOO A;  2XV6 A;  3WBH A;  1EMV A;  4IZ6 A;  2KOD A;  4XFZ A;  3CCM P;  3CD6 P;  2KWL A;  4PH0 A;  4U0E A;  1VKU A;  2BHV A;  2VSQ A;  4NEO A;  3G26 A;  5KP8 B;  4BPH A;  2FQ1 A;  1E6J P;  4H2W C;  3GZL A;  2VLO A;  2Z45 A;  1EIA A;  2EIA A;  3G6E P;  1NJI Q;  1ZNV A;  3CE7 A;  3CCQ P;  5BS1 A;  3EJD A;  2KOR A;  2JU2 A;  2GZF A;  1M74 A;  2XXM A;  2E1M A;  1VQ4 P;  2K0Y A;  2JYL A;  3CCV P;  2M8L A;  4IPY A;  4MRT C;  2MY5 A;  2P9X A;  1JJ2 O;  2K0X A;  2KOS A;  1Q81 Q;  3DS0 A;  5EJD A;  2K94 A;  2GDW A;  3CC7 P;  2AFD A;  3B5I A;  2Z46 A;  2KGE A;  4DG9 A;  1RO2 A;  2VLN A;  2KG8 A;  2KG9 A;  2KG6 A;  1VQP P;  2KGA A;  5F2O A;  3P05 A;  4QKO A;  2PEQ A;  2MVU A;  2JGP A;  4H2X C;  2FQ2 A;  3I55 P;  2N98 A;  3G29 A;  1VQ7 P;  2OTJ P;  2AFE A;  2CG5 B;  3G0V A;  3CXC O;  1N8R Q;  2LPK A;  3GJN A;  1YIT P;  2JU1 A;  3RG2 A;  5F2N A;  5HV8 A;  1M90 Q;  2EHT A;  1QVG O;  2EG5 A;  1BXI A;  1VQL P;  2JQ4 A;  1VQO P;  3U43 A;  2K5X A;  1K9M Q;  2LTE A;  3NY7 B;  1K8A Q;  2JB0 A;  3NTE A;  2CWO A;  3CCS P;  4XFX A;  3DPH A;  2FQ0 A; 
#chains in the Genus database with same CATH homology
 1NJI Q;  2PY8 A;  1ZMB A;  3CME P;  3G4S P;  3G1I A;  3DS2 A;  1YJ9 P;  3OW2 O;  2QEX P;  3CCQ P;  3LRY A;  2PEI A;  3DS3 A;  5BS1 A;  3H47 A;  1M74 A;  2XXM A;  2E1M A;  1VQ4 P;  1Q7Y Q;  3HYB A;  2XT1 A;  2JYL A;  3G1G A;  3G21 A;  4GR2 A;  2DGY A;  4QNB A;  3CCV P;  2M8L A;  2PEM A;  3H4E A;  4IPY A;  3DS5 A;  2JYG A;  2P9X A;  5BS2 A;  1JJ2 O;  1BAJ A;  1D1D A;  4U0A A;  1Q81 Q;  2PEJ A;  3DS0 A;  1RNI A;  4XFY A;  2M8N A;  3CC2 P;  5F2K A;  1K73 Q;  2M8P A;  3E2D A;  1YIJ P;  3CC7 P;  3B5I A;  1K30 A;  2OAR A;  2L6E A;  1RO0 A;  2PEK A;  2Z46 A;  1KD1 Q;  3CCE P;  1Q86 Q;  1RO2 A;  2JO0 A;  3CC4 P;  1S72 P;  3CMA P;  4XRO A;  2PEO A;  1VQP P;  5F2O A;  5JPA A;  1KQS O;  1IUQ A;  3P05 A;  4PH1 A;  3H0D A;  1M6N A;  2PEQ A;  1A8O A;  4WYM A;  3I55 P;  4COP A;  3G29 A;  5HGO A;  2OTL P;  1M6E X;  1VQ7 P;  3G71 P;  2OTJ P;  3DS4 A;  5DCK A;  3HZQ A;  1VQ8 P;  5HGM A;  5HGN A;  4GR6 A;  3RG6 C;  4M0I A;  3G0V A;  5I4T G;  1M1K Q;  3CXC O;  1W2B O;  1N8R Q;  3CCL P;  3M1M A;  3Q20 A;  1YIT P;  3CCU P;  1YI2 P;  1YJW P;  2EFJ A;  3I56 P;  2Z44 A;  1VQM P;  5F2N A;  1A43 A;  4COC A;  1AUM A;  2ONT A;  1QRJ A;  1M90 Q;  1QVG O;  4U0C A;  1VQK P;  1EOQ A;  4U0D A;  1YJN P;  3MGE A;  2EG5 A;  1VQL P;  2QA4 P;  2XV6 A;  3WBH A;  3DTJ A;  3CCJ P;  1VQO P;  4U0F A;  3CCR P;  1K9M Q;  2LF4 A;  4XRQ A;  2BUO A;  2KOD A;  1YHQ P;  4XFZ A;  3CCM P;  3CD6 P;  2PEN A;  4PH0 A;  4U0E A;  1K8A Q;  3NTE A;  2BHV A;  3G26 A;  4U0B A;  2CWO A;  3CPW O;  1VQ5 P;  1QVF O;  3G28 A;  3CCS P;  1E6J P;  3DS1 A;  4XFX A;  1VQ6 P;  3DPH A;  5HGL A;  2Z45 A;  1EIA A;  2EIA A;  1Q82 Q;  3G6E P;  1VQN P;  1VQ9 P;  1KC8 Q;  3VRL C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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