2LOLA

Nmr structure of an acyl-carrier protein from rickettsia prowazekii, seattle structural genomics center for infectious disease (ssgcid)
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
81
structure length
81
Chain Sequence
MSTTDKIEQKVIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDEATKIKTVSDVIKYIKERQS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title NMR structure of an acyl-carrier protein from Rickettsia prowazekii, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
rcsb
molecule tags Lipid transport
source organism Rickettsia prowazekii str. madrid e
molecule keywords Acyl carrier protein
total genus 17
structure length 81
sequence length 81
ec nomenclature
pdb deposition date 2012-01-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 2lolA00
2LKIA 2EHTA 2FQ0A 1DNYA 2KGEA 2X2BA 2KG9A 2LPKA 5HVCA 1AF8A 1VKUA 5KP6B 2LIUA 2FVEA 3EJBA 2DNWA 2MVUA 3NY7B 1NQ4A 3GZMA 2K2QA 5EJDA 2GDXA 2L22A 2MD9A 2FVFA 2N6YA 2LL8A 5KP8B 2CGQA 2GDYA 4PWVB 4BPGA 4BPFA 4NEOA 1HY8A 1DV5A 2FVAA 2LIWA 2JU2A 2ROQA 2FACA 2N6ZA 2K93A 2N98A 2FQ1A 1L0IA 2LTEA 2XZ1C 4PXHB 2CG5B 2N5HA 2FAEA 2K92A 2PNGA 4H2XC 2KWLA 3RG2A 2AFDA 5KP7B 1T8KA 2LOLA 2KOOA 1HQBA 5CZDB 2JQ4A 2KG8A 2KG6A 2EHSA 4H2YC 2KR5A 2VSQA 2N5IA 2K0YA 2K94A 2GDWA 2CNRA 2KGAA 2KGCA 2XZ0D 2MF4A 3EJDA 1OR5A 2MR7A 2FQ2A 2JU1A 2KW2A 2K0XA 3EJEA 2MY5A 2KOSA 2KGDA 4CA3A 2LMLA 2AF8A 2L4BA 3LMOA 2M5RA 2AFEA 2FHSC 2L9FA 2KOQA 2L0QA 3GZLA 4IZ6A 5HV8A 4R0MA 2AVAA 2JGPA 2QNWA 1X3OA 2MR8A 4MRTC 2MVVA 4DG9A 2FADA 3CE7A 4BPHA 2N50A 1ACPA 1KLPA 4H2WC 2CQ8A 2KORA 4HKGA 1L0HA 2KOPA 1F80D
chains in the Genus database with same CATH superfamily
2LKIA 4M0IA 2PEJA 2EHTA 2JYGA 3DS0A 2GZJA 1VKUA 5F2NA 1M90Q 3E2DA 2LL8A 3I55P 1A43A 2CGQA 1DV5A 2FACA 2Z46A 1YJ9P 1AUMA 3P05A 3H4EA 1QVGO 3DS2A 1Q86Q 2K92A 2CWOA 2VLNA 2GZGA 3VRLC 2BHVA 3CCMP 2LOLA 2KOOA 1HQBA 5CZDB 2GYKA 1IMQA 2JBGA 2M8PA 2K94A 3G1GA 2GZFA 2KGAA 2NO8A 2XZ0D 3B5IA 4PH0A 3CCSP 3U43A 3G28A 3EJEA 3CCQP 2KOSA 1CEIA 2ONTA 3OW2O 3LMOA 2M5RA 2AFEA 2KOQA 2L0QA 2EFJA 1UJZA 4R0MA 3CCLP 1X3OA 1IUQA 3CE7A 4BPHA 7CEIA 4XFYA 1VQ4P 2CQ8A 4IPYA 1M6NA 2KOPA 1FR2A 1IMPA 2XV6A 4U0BA 1Q81Q 2JO0A 2KGEA 2X2BA 5HVCA 3CCUP 1AF8A 5KP6B 2MVUA 1NQ4A 3GZMA 2JYLA 2N6YA 5KP8B 1K73Q 3NTEA 2QEXP 2EIAA 2ROQA 2N6ZA 1L0IA 5F2OA 1VQ5P 3DS3A 4PXHB 3DTJA 2FAEA 2PEQA 4XFXA 4XRQA 2AFDA 1N8RQ 3G1IA 5F2KA 2OTJP 1AYIA 3M1MA 5I4TG 2KG6A 2PEOA 1YITP 2KR5A 2XT1A 2N5IA 1KC8Q 2K0YA 1M1KQ 1E0HA 3EJDA 2K0XA 2MY5A 1YJWP 3MGEA 2P9XA 1JJ2O 2LMLA 1VHNA 2PENA 2FHSC 3GZLA 1UNKA 2M8LA 2QNWA 1YJNP 4MRTC 4DG9A 1ACPA 2N50A 2M8NA 2GZIA 1E6JP 4H2WC 2DGYA 3RG6C 2VLPA 3G6EP 1F80D 1VQ9P 4COCA 5HGMA 2XXMA 1VQ7P 5HGNA 1MZ8A 3CCJP 1VQLP 2LIUA 3EJBA 1BAJA 3CPWO 3GJNA 5EJDA 3CMAP 2L22A 2MD9A 2FVFA 1QVFO 2WPTA 4PWVB 4BPGA 4BPFA 4NEOA 1HY8A 4U0EA 2PEKA 2FVAA 2KODA 3LRYA 2LIWA 1VQMP 1Z6MA 1RNIA 2GZEA 3G4SP 2LTEA 1YIJP 5DCKA 2BUOA 2ERHA 5JPAA 1D1DA 1W2BO 2PEMA 3CCEP 2KWLA 1K30A 3RG2A 3G21A 4PH1A 3CC2P 3HZQA 1A8OA 1VQOP 2PEIA 2JQ4A 3H0DA 2JAZA 2Z45A 4XROA 1KQSO 3DS4A 1VQ6P 3GKLC 2GDWA 3G0VA 1Q7YQ 1OR5A 2K0DX 2FQ2A 2JU1A 2KW2A 2Z44A 2L6EA 5EW5E 2VLOA 3CCVP 2L4BA 5HGOA 4IZ6A 1EOQA 5HV8A 4WYMA 1YI2P 3CCRP 3Q20A 1VQKP 2JGPA 2MR8A 2E1MA 2MVVA 4U0CA 3G29A 2FADA 1KLPA 1KD1Q 3CD6P 1BXIA 1EMVA 5BS2A 4U0AA 1K8AQ 5HGLA 5BS1A 3I56P 1S72P 1RO2A 2FQ0A 1DNYA 2KG9A 2LPKA 3NY7B 2FVEA 2DNWA 1GPJA 2K2QA 2GDXA 1ZNVA 4QNBA 2GDYA 4COPA 1QRJA 3WBHA 1RO0A 1VQ8P 2JU2A 1GXHA 2K93A 2N98A 2FQ1A 1VQNP 2XZ1C 3HYBA 1Q82Q 2CG5B 2N5HA 4QKOA 3G71P 1M74A 2VLQA 1ZMBA 2PNGA 4H2XC 5KP7B 1K9MQ 1T8KA 2QA4P 1M6EX 2PY8A 3CMEP 1GXGA 4XFZA 4U0DA 2KG8A 2K5XA 2EHSA 4H2YC 2VSQA 2CNRA 1VQPP 4GR6A 3DPHA 2KGCA 2MF4A 3DS1A 4U0FA 2MR7A 3G26A 4F37A 2KGDA 4CA3A 2AF8A 3CC4P 3H47A 2JB0A 1EIAA 2L9FA 2EG5A 3DS5A 3CC7P 1YHQP 2AVAA 2LF4A 4UHPB 2OARA 4GR2A 3B4QA 3CXCO 1NJIQ 2OTLP 2KORA 4HKGA 1L0HA
chains in the Genus database with same CATH topology
2LKIA 2EHTA 2FQ0A 1DNYA 2KGEA 2X2BA 2KG9A 2LPKA 5HVCA 1AF8A 1VKUA 5KP6B 2LIUA 2FVEA 3EJBA 2DNWA 2MVUA 3NY7B 1NQ4A 3GZMA 2K2QA 5EJDA 2GDXA 2L22A 2MD9A 2FVFA 2N6YA 2LL8A 5KP8B 2CGQA 2GDYA 4PWVB 4BPGA 4BPFA 4NEOA 1HY8A 1DV5A 2FVAA 2LIWA 2JU2A 2ROQA 2FACA 2N6ZA 2K93A 2N98A 2FQ1A 1L0IA 2LTEA 2XZ1C 4PXHB 2CG5B 2N5HA 2FAEA 2K92A 2PNGA 4H2XC 2KWLA 3RG2A 2AFDA 5KP7B 1T8KA 2LOLA 2KOOA 1HQBA 5CZDB 2JQ4A 2KG8A 2KG6A 2EHSA 4H2YC 2KR5A 2VSQA 2N5IA 2K0YA 2K94A 2GDWA 2CNRA 2KGAA 2KGCA 2XZ0D 2MF4A 3EJDA 1OR5A 2MR7A 2FQ2A 2JU1A 2KW2A 2K0XA 3EJEA 2MY5A 2KOSA 2KGDA 4CA3A 2LMLA 2AF8A 2L4BA 3LMOA 2M5RA 2AFEA 2FHSC 2L9FA 2KOQA 2L0QA 3GZLA 4IZ6A 5HV8A 4R0MA 2AVAA 2JGPA 2QNWA 1X3OA 2MR8A 4MRTC 2MVVA 4DG9A 2FADA 3CE7A 4BPHA 2N50A 1ACPA 1KLPA 4H2WC 2CQ8A 2KORA 4HKGA 1L0HA 2KOPA 1F80D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LKI A;  2EHT A;  2FQ0 A;  1DNY A;  2KGE A;  2X2B A;  2KG9 A;  2LPK A;  5HVC A;  1AF8 A;  1VKU A;  5KP6 B;  2LIU A;  2FVE A;  3EJB A;  2DNW A;  2MVU A;  3NY7 B;  1NQ4 A;  3GZM A;  2K2Q A;  5EJD A;  2GDX A;  2L22 A;  2MD9 A;  2FVF A;  2N6Y A;  2LL8 A;  5KP8 B;  2CGQ A;  2GDY A;  4PWV B;  4BPG A;  4BPF A;  4NEO A;  1HY8 A;  1DV5 A;  2FVA A;  2LIW A;  2JU2 A;  2ROQ A;  2FAC A;  2N6Z A;  2K93 A;  2N98 A;  2FQ1 A;  1L0I A;  2LTE A;  2XZ1 C;  4PXH B;  2CG5 B;  2N5H A;  2FAE A;  2K92 A;  2PNG A;  4H2X C;  2KWL A;  3RG2 A;  2AFD A;  5KP7 B;  1T8K A;  2LOL A;  2KOO A;  1HQB A;  5CZD B;  2JQ4 A;  2KG8 A;  2KG6 A;  2EHS A;  4H2Y C;  2KR5 A;  2VSQ A;  2N5I A;  2K0Y A;  2K94 A;  2GDW A;  2CNR A;  2KGA A;  2KGC A;  2XZ0 D;  2MF4 A;  3EJD A;  1OR5 A;  2MR7 A;  2FQ2 A;  2JU1 A;  2KW2 A;  2K0X A;  3EJE A;  2MY5 A;  2KOS A;  2KGD A;  4CA3 A;  2LML A;  2AF8 A;  2L4B A;  3LMO A;  2M5R A;  2AFE A;  2FHS C;  2L9F A;  2KOQ A;  2L0Q A;  3GZL A;  4IZ6 A;  5HV8 A;  4R0M A;  2AVA A;  2JGP A;  2QNW A;  1X3O A;  2MR8 A;  4MRT C;  2MVV A;  4DG9 A;  2FAD A;  3CE7 A;  4BPH A;  2N50 A;  1ACP A;  1KLP A;  4H2W C;  2CQ8 A;  2KOR A;  4HKG A;  1L0H A;  2KOP A;  1F80 D; 
#chains in the Genus database with same CATH topology
 2LKI A;  4M0I A;  2PEJ A;  2EHT A;  2JYG A;  3DS0 A;  2GZJ A;  1VKU A;  5F2N A;  1M90 Q;  3E2D A;  2LL8 A;  3I55 P;  1A43 A;  2CGQ A;  1DV5 A;  2FAC A;  2Z46 A;  1YJ9 P;  1AUM A;  3P05 A;  3H4E A;  1QVG O;  3DS2 A;  1Q86 Q;  2K92 A;  2CWO A;  2VLN A;  2GZG A;  3VRL C;  2BHV A;  3CCM P;  2LOL A;  2KOO A;  1HQB A;  5CZD B;  2GYK A;  1IMQ A;  2JBG A;  2M8P A;  2K94 A;  3G1G A;  2GZF A;  2KGA A;  2NO8 A;  2XZ0 D;  3B5I A;  4PH0 A;  3CCS P;  3U43 A;  3G28 A;  3EJE A;  3CCQ P;  2KOS A;  1CEI A;  2ONT A;  3OW2 O;  3LMO A;  2M5R A;  2AFE A;  2KOQ A;  2L0Q A;  2EFJ A;  1UJZ A;  4R0M A;  3CCL P;  1X3O A;  1IUQ A;  3CE7 A;  4BPH A;  7CEI A;  4XFY A;  1VQ4 P;  2CQ8 A;  4IPY A;  1M6N A;  2KOP A;  1FR2 A;  1IMP A;  2XV6 A;  4U0B A;  1Q81 Q;  2JO0 A;  2KGE A;  2X2B A;  5HVC A;  3CCU P;  1AF8 A;  5KP6 B;  2MVU A;  1NQ4 A;  3GZM A;  2JYL A;  2N6Y A;  5KP8 B;  1K73 Q;  3NTE A;  2QEX P;  2EIA A;  2ROQ A;  2N6Z A;  1L0I A;  5F2O A;  1VQ5 P;  3DS3 A;  4PXH B;  3DTJ A;  2FAE A;  2PEQ A;  4XFX A;  4XRQ A;  2AFD A;  1N8R Q;  3G1I A;  5F2K A;  2OTJ P;  1AYI A;  3M1M A;  5I4T G;  2KG6 A;  2PEO A;  1YIT P;  2KR5 A;  2XT1 A;  2N5I A;  1KC8 Q;  2K0Y A;  1M1K Q;  1E0H A;  3EJD A;  2K0X A;  2MY5 A;  1YJW P;  3MGE A;  2P9X A;  1JJ2 O;  2LML A;  1VHN A;  2PEN A;  2FHS C;  3GZL A;  1UNK A;  2M8L A;  2QNW A;  1YJN P;  4MRT C;  4DG9 A;  1ACP A;  2N50 A;  2M8N A;  2GZI A;  1E6J P;  4H2W C;  2DGY A;  3RG6 C;  2VLP A;  3G6E P;  1F80 D;  1VQ9 P;  4COC A;  5HGM A;  2XXM A;  1VQ7 P;  5HGN A;  1MZ8 A;  3CCJ P;  1VQL P;  2LIU A;  3EJB A;  1BAJ A;  3CPW O;  3GJN A;  5EJD A;  3CMA P;  2L22 A;  2MD9 A;  2FVF A;  1QVF O;  2WPT A;  4PWV B;  4BPG A;  4BPF A;  4NEO A;  1HY8 A;  4U0E A;  2PEK A;  2FVA A;  2KOD A;  3LRY A;  2LIW A;  1VQM P;  1Z6M A;  1RNI A;  2GZE A;  3G4S P;  2LTE A;  1YIJ P;  5DCK A;  2BUO A;  2ERH A;  5JPA A;  1D1D A;  1W2B O;  2PEM A;  3CCE P;  2KWL A;  1K30 A;  3RG2 A;  3G21 A;  4PH1 A;  3CC2 P;  3HZQ A;  1A8O A;  1VQO P;  2PEI A;  2JQ4 A;  3H0D A;  2JAZ A;  2Z45 A;  4XRO A;  1KQS O;  3DS4 A;  1VQ6 P;  3GKL C;  2GDW A;  3G0V A;  1Q7Y Q;  1OR5 A;  2K0D X;  2FQ2 A;  2JU1 A;  2KW2 A;  2Z44 A;  2L6E A;  5EW5 E;  2VLO A;  3CCV P;  2L4B A;  5HGO A;  4IZ6 A;  1EOQ A;  5HV8 A;  4WYM A;  1YI2 P;  3CCR P;  3Q20 A;  1VQK P;  2JGP A;  2MR8 A;  2E1M A;  2MVV A;  4U0C A;  3G29 A;  2FAD A;  1KLP A;  1KD1 Q;  3CD6 P;  1BXI A;  1EMV A;  5BS2 A;  4U0A A;  1K8A Q;  5HGL A;  5BS1 A;  3I56 P;  1S72 P;  1RO2 A;  2FQ0 A;  1DNY A;  2KG9 A;  2LPK A;  3NY7 B;  2FVE A;  2DNW A;  1GPJ A;  2K2Q A;  2GDX A;  1ZNV A;  4QNB A;  2GDY A;  4COP A;  1QRJ A;  3WBH A;  1RO0 A;  1VQ8 P;  2JU2 A;  1GXH A;  2K93 A;  2N98 A;  2FQ1 A;  1VQN P;  2XZ1 C;  3HYB A;  1Q82 Q;  2CG5 B;  2N5H A;  4QKO A;  3G71 P;  1M74 A;  2VLQ A;  1ZMB A;  2PNG A;  4H2X C;  5KP7 B;  1K9M Q;  1T8K A;  2QA4 P;  1M6E X;  2PY8 A;  3CME P;  1GXG A;  4XFZ A;  4U0D A;  2KG8 A;  2K5X A;  2EHS A;  4H2Y C;  2VSQ A;  2CNR A;  1VQP P;  4GR6 A;  3DPH A;  2KGC A;  2MF4 A;  3DS1 A;  4U0F A;  2MR7 A;  3G26 A;  4F37 A;  2KGD A;  4CA3 A;  2AF8 A;  3CC4 P;  3H47 A;  2JB0 A;  1EIA A;  2L9F A;  2EG5 A;  3DS5 A;  3CC7 P;  1YHQ P;  2AVA A;  2LF4 A;  4UHP B;  2OAR A;  4GR2 A;  3B4Q A;  3CXC O;  1NJI Q;  2OTL P;  2KOR A;  4HKG A;  1L0H A; 
#chains in the Genus database with same CATH homology
 2LKI A;  2EHT A;  2FQ0 A;  1DNY A;  2KGE A;  2X2B A;  2KG9 A;  2LPK A;  5HVC A;  1AF8 A;  1VKU A;  5KP6 B;  2LIU A;  2FVE A;  3EJB A;  2DNW A;  2MVU A;  3NY7 B;  1NQ4 A;  3GZM A;  2K2Q A;  5EJD A;  2GDX A;  2L22 A;  2MD9 A;  2FVF A;  2N6Y A;  2LL8 A;  5KP8 B;  2CGQ A;  2GDY A;  4PWV B;  4BPG A;  4BPF A;  4NEO A;  1HY8 A;  1DV5 A;  2FVA A;  2LIW A;  2JU2 A;  2ROQ A;  2FAC A;  2N6Z A;  2K93 A;  2N98 A;  2FQ1 A;  1L0I A;  2LTE A;  2XZ1 C;  4PXH B;  2CG5 B;  2N5H A;  2FAE A;  2K92 A;  2PNG A;  4H2X C;  2KWL A;  3RG2 A;  2AFD A;  5KP7 B;  1T8K A;  2LOL A;  2KOO A;  1HQB A;  5CZD B;  2JQ4 A;  2KG8 A;  2KG6 A;  2EHS A;  4H2Y C;  2KR5 A;  2VSQ A;  2N5I A;  2K0Y A;  2K94 A;  2GDW A;  2CNR A;  2KGA A;  2KGC A;  2XZ0 D;  2MF4 A;  3EJD A;  1OR5 A;  2MR7 A;  2FQ2 A;  2JU1 A;  2KW2 A;  2K0X A;  3EJE A;  2MY5 A;  2KOS A;  2KGD A;  4CA3 A;  2LML A;  2AF8 A;  2L4B A;  3LMO A;  2M5R A;  2AFE A;  2FHS C;  2L9F A;  2KOQ A;  2L0Q A;  3GZL A;  4IZ6 A;  5HV8 A;  4R0M A;  2AVA A;  2JGP A;  2QNW A;  1X3O A;  2MR8 A;  4MRT C;  2MVV A;  4DG9 A;  2FAD A;  3CE7 A;  4BPH A;  2N50 A;  1ACP A;  1KLP A;  4H2W C;  2CQ8 A;  2KOR A;  4HKG A;  1L0H A;  2KOP A;  1F80 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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