3DS2A

Hiv-1 capsid c-terminal domain mutant (y169a)
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
84
structure length
84
Chain Sequence
TSILDIRQGPKEPFRDYVDRFAKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords HIV-1 CAPSID PROTEIN
publication title Residues in the HIV-1 Capsid Assembly Inhibitor Binding Site Are Essential for Maintaining the Assembly-competent Quaternary Structure of the Capsid Protein.
pubmed doi rcsb
source organism Human immunodeficiency virus 1
molecule tags Viral protein
total genus 27
structure length 84
sequence length 84
chains with identical sequence B
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2008-07-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 3ds2A00
2BUOA 4IPYA 2JYLA 2EIAA 4QNBA 5HGOA 2XT1A 2ONTA 3G29A 3LRYA 4XRQA 2M8LA 5JPAA 4XFXA 2JYGA 3DS4A 1QRJA 4XROA 4M0IA 4U0CA 3G28A 1A8OA 2L6EA 1BAJA 2M8PA 2KODA 3H4EA 1D1DA 3DPHA 2JO0A 1AUMA 3DS0A 3DS5A 2XXMA 4U0EA 4U0DA 4PH0A 3NTEA 4U0FA 3DS2A 2M8NA 4WYMA 2XV6A 5HGMA 4COPA 5I4TG 3G0VA 3P05A 4PH1A 4U0BA 4COCA 3MGEA 5HGNA 4U0AA 1EIAA 3G21A 1A43A 3DTJA 3G1GA 4XFZA 3DS3A 3G26A 3G1IA 4XFYA 1E6JP 5HGLA 3VRLC 1EOQA 2LF4A 3H47A 5DCKA 3DS1A
chains in the Genus database with same CATH superfamily
2KOOA 1K73Q 2LIUA 4R0MA 3OW2O 2EHTA 4U0CA 2KGAA 4PH0A 3DS2A 3HZQA 2LOLA 4DG9A 5HGNA 1VQ8P 2FAEA 4XRQA 1Q86Q 2FVAA 2FQ1A 1UJZA 2JGPA 2CWOA 1ACPA 2FVFA 2K2QA 3CCJP 2OARA 2XZ0D 2PNGA 4H2XC 1K8AQ 4CA3A 2PY8A 2PEMA 3U43A 2E1MA 2M8LA 2EG5A 3I55P 2EHSA 2GZIA 4PXHB 2KODA 1VQPP 1BXIA 3H4EA 1Q7YQ 4NEOA 3CMEP 3MGEA 1E0HA 2AFEA 3I56P 3CCQP 7CEIA 3H47A 1ZMBA 3EJDA 1N8RQ 1YJWP 2JYLA 1YIJP 4BPHA 2DGYA 3LRYA 2N50A 5KP8B 3G28A 2PEQA 1K30A 1KD1Q 1M6NA 3DS5A 5F2KA 2KGCA 1A43A 5F2NA 3CCLP 1L0HA 2VLOA 3CMAP 2XT1A 3CCSP 2VLPA 2K0YA 2N6YA 3CCEP 2VLNA 1YHQP 1RNIA 2KWLA 3E2DA 1L0IA 2MVUA 2VLQA 2Z44A 1KC8Q 2WPTA 2Z46A 5HGLA 1K9MQ 3EJBA 3CCUP 4PWVB 4QNBA 2MVVA 2VSQA 2DNWA 1FR2A 2GZFA 1NQ4A 4GR2A 1OR5A 2XXMA 2AF8A 2P9XA 2K93A 2M5RA 4UHPB 2N5HA 4XFZA 1KQSO 2K5XA 1EOQA 3CCMP 2KOQA 4HKGA 2GDYA 2QNWA 1GPJA 2K94A 3G6EP 2JO0A 3RG2A 2M8NA 1W2BO 1GXHA 2N5IA 1Z6MA 3CD6P 4H2WC 2KG8A 2PEJA 1E6JP 3CC7P 1S72P 2PEIA 2BUOA 1IMQA 1M74A 3WBHA 4MRTC 3CE7A 2L9FA 2Z45A 2JBGA 4M0IA 2LIWA 2PENA 1VQ4P 3DS0A 5KP7B 4WYMA 2L0QA 2XV6A 1VQ5P 3EJEA 2ROQA 1EIAA 3GZMA 2KORA 2GZEA 1MZ8A 2KGEA 1AYIA 2PEOA 2EIAA 2JAZA 4IZ6A 2AFDA 2GYKA 3DS4A 2K0XA 1VQ9P 2X2BA 3B5IA 1D1DA 3DPHA 5HGMA 3CCRP 1Q81Q 5HVCA 2MY5A 1VKUA 3HYBA 2JU1A 3G21A 3DS3A 2EFJA 1YI2P 2N6ZA 1HQBA 1UNKA 2JYGA 2KGDA 1IUQA 2JU2A 1AF8A 4U0EA 5F2OA 3RG6C 4COCA 2FQ0A 3H0DA 1RO0A 4XFYA 3G1IA 2LL8A 5EW5E 1CEIA 1KLPA 2ONTA 1YJ9P 1VQMP 2N98A 2L6EA 2QEXP 2LTEA 1AUMA 3GZLA 3NTEA 2CNRA 4COPA 1VQOP 1M1KQ 3P05A 4U0AA 2KW2A 3CC4P 3M1MA 3G26A 2KG6A 3CCVP 1DV5A 5HGOA 5KP6B 2MD9A 2GZGA 2CQ8A 4XFXA 3CC2P 1ZNVA 1VQKP 3CXCO 1QVGO 3LMOA 2FHSC 2CG5B 5EJDA 1X3OA 1YJNP 1VQNP 4GR6A 4U0BA 2L22A 1EMVA 1NJIQ 2FADA 2NO8A 2AVAA 3DS1A 1HY8A 1F80D 2CGQA 4BPFA 3G29A 1VQ6P 5JPAA 3GJNA 4XROA 1M6EX 2QA4P 2JQ4A 2L4BA 2LKIA 2K92A 3G1GA 1IMPA 5BS1A 5CZDB 2PEKA 3VRLC 4IPYA 2JB0A 1VHNA 3GKLC 4H2YC 2GDXA 4F37A 4QKOA 1A8OA 2M8PA 5BS2A 1VQLP 3G71P 2LPKA 1QVFO 2OTJP 2KR5A 1VQ7P 5DCKA 1Q82Q 2FQ2A 3B4QA 1YITP 2KOPA 2MR8A 1M90Q 1BAJA 4U0DA 3CPWO 4U0FA 2XZ1C 5I4TG 2FACA 4PH1A 2K0DX 2FVEA 2OTLP 3G0VA 2BHVA 2GDWA 3G4SP 1JJ2O 1QRJA 1DNYA 5HV8A 1RO2A 2ERHA 3NY7B 2MR7A 2LMLA 2MF4A 2KOSA 2KG9A 2GZJA 3DTJA 3Q20A 1T8KA 1GXGA 2LF4A 4BPGA
chains in the Genus database with same CATH topology
2PEOA 1K73Q 2EIAA 3CMAP 2XT1A 3G29A 1VQ6P 5JPAA 3OW2O 3DS4A 4XROA 3CCSP 1VQ9P 1M6EX 4U0CA 2QA4P 3CCEP 3B5IA 1D1DA 3DPHA 4PH0A 1YHQP 1RNIA 3DS2A 3E2DA 3HZQA 5HGMA 3CCRP 1Q81Q 5HGNA 1VQ8P 3HYBA 2Z44A 3G21A 3G1GA 3DS3A 2EFJA 1YI2P 1KC8Q 5BS1A 2Z46A 2PEKA 4XRQA 5HGLA 1K9MQ 3VRLC 3CCUP 1Q86Q 4IPYA 4QNBA 2JYGA 2CWOA 1IUQA 1A8OA 2M8PA 5BS2A 1VQLP 3CCJP 4GR2A 2XXMA 4U0EA 2OARA 3G71P 2P9XA 5F2OA 3RG6C 4COCA 1QVFO 2OTJP 1K8AQ 3H0DA 1RO0A 4XFZA 4XFYA 2PY8A 3G1IA 1KQSO 1EOQA 2PEMA 1VQ7P 5DCKA 1Q82Q 3CCMP 2E1MA 2ONTA 2M8LA 1YITP 1VQMP 1YJ9P 2EG5A 3I55P 1M90Q 2L6EA 1BAJA 2KODA 1VQPP 1Q7YQ 3H4EA 2QEXP 3G6EP 2JO0A 1AUMA 4U0DA 3CPWO 3CMEP 3NTEA 4U0FA 2M8NA 1W2BO 4COPA 5I4TG 1VQOP 1M1KQ 3P05A 4PH1A 3MGEA 4U0AA 3CC4P 3CD6P 3M1MA 3I56P 3G26A 2PEJA 1E6JP 3CCQP 1S72P 3CC7P 2OTLP 2PEIA 3G0VA 3H47A 3CCVP 1ZMBA 2BUOA 1N8RQ 1YJWP 1M74A 2BHVA 2JYLA 3WBHA 1YIJP 5HGOA 3G4SP 2DGYA 3LRYA 2Z45A 4XFXA 1JJ2O 3CC2P 1QRJA 4M0IA 3CXCO 1VQKP 2PENA 1QVGO 3G28A 1VQ4P 2PEQA 1K30A 1KD1Q 3DS0A 1M6NA 3DS5A 1YJNP 4WYMA 1RO2A 1VQ5P 2XV6A 5F2KA 4GR6A 1VQNP 4U0BA 1NJIQ 1EIAA 1A43A 3DTJA 5F2NA 3Q20A 3CCLP 2LF4A 3DS1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BUO A;  4IPY A;  2JYL A;  2EIA A;  4QNB A;  5HGO A;  2XT1 A;  2ONT A;  3G29 A;  3LRY A;  4XRQ A;  2M8L A;  5JPA A;  4XFX A;  2JYG A;  3DS4 A;  1QRJ A;  4XRO A;  4M0I A;  4U0C A;  3G28 A;  1A8O A;  2L6E A;  1BAJ A;  2M8P A;  2KOD A;  3H4E A;  1D1D A;  3DPH A;  2JO0 A;  1AUM A;  3DS0 A;  3DS5 A;  2XXM A;  4U0E A;  4U0D A;  4PH0 A;  3NTE A;  4U0F A;  3DS2 A;  2M8N A;  4WYM A;  2XV6 A;  5HGM A;  4COP A;  5I4T G;  3G0V A;  3P05 A;  4PH1 A;  4U0B A;  4COC A;  3MGE A;  5HGN A;  4U0A A;  1EIA A;  3G21 A;  1A43 A;  3DTJ A;  3G1G A;  4XFZ A;  3DS3 A;  3G26 A;  3G1I A;  4XFY A;  1E6J P;  5HGL A;  3VRL C;  1EOQ A;  2LF4 A;  3H47 A;  5DCK A;  3DS1 A; 
#chains in the Genus database with same CATH topology
 2KOO A;  1K73 Q;  2LIU A;  4R0M A;  3OW2 O;  2EHT A;  4U0C A;  2KGA A;  4PH0 A;  3DS2 A;  3HZQ A;  2LOL A;  4DG9 A;  5HGN A;  1VQ8 P;  2FAE A;  4XRQ A;  1Q86 Q;  2FVA A;  2FQ1 A;  1UJZ A;  2JGP A;  2CWO A;  1ACP A;  2FVF A;  2K2Q A;  3CCJ P;  2OAR A;  2XZ0 D;  2PNG A;  4H2X C;  1K8A Q;  4CA3 A;  2PY8 A;  2PEM A;  3U43 A;  2E1M A;  2M8L A;  2EG5 A;  3I55 P;  2EHS A;  2GZI A;  4PXH B;  2KOD A;  1VQP P;  1BXI A;  3H4E A;  1Q7Y Q;  4NEO A;  3CME P;  3MGE A;  1E0H A;  2AFE A;  3I56 P;  3CCQ P;  7CEI A;  3H47 A;  1ZMB A;  3EJD A;  1N8R Q;  1YJW P;  2JYL A;  1YIJ P;  4BPH A;  2DGY A;  3LRY A;  2N50 A;  5KP8 B;  3G28 A;  2PEQ A;  1K30 A;  1KD1 Q;  1M6N A;  3DS5 A;  5F2K A;  2KGC A;  1A43 A;  5F2N A;  3CCL P;  1L0H A;  2VLO A;  3CMA P;  2XT1 A;  3CCS P;  2VLP A;  2K0Y A;  2N6Y A;  3CCE P;  2VLN A;  1YHQ P;  1RNI A;  2KWL A;  3E2D A;  1L0I A;  2MVU A;  2VLQ A;  2Z44 A;  1KC8 Q;  2WPT A;  2Z46 A;  5HGL A;  1K9M Q;  3EJB A;  3CCU P;  4PWV B;  4QNB A;  2MVV A;  2VSQ A;  2DNW A;  1FR2 A;  2GZF A;  1NQ4 A;  4GR2 A;  1OR5 A;  2XXM A;  2AF8 A;  2P9X A;  2K93 A;  2M5R A;  4UHP B;  2N5H A;  4XFZ A;  1KQS O;  2K5X A;  1EOQ A;  3CCM P;  2KOQ A;  4HKG A;  2GDY A;  2QNW A;  1GPJ A;  2K94 A;  3G6E P;  2JO0 A;  3RG2 A;  2M8N A;  1W2B O;  1GXH A;  2N5I A;  1Z6M A;  3CD6 P;  4H2W C;  2KG8 A;  2PEJ A;  1E6J P;  3CC7 P;  1S72 P;  2PEI A;  2BUO A;  1IMQ A;  1M74 A;  3WBH A;  4MRT C;  3CE7 A;  2L9F A;  2Z45 A;  2JBG A;  4M0I A;  2LIW A;  2PEN A;  1VQ4 P;  3DS0 A;  5KP7 B;  4WYM A;  2L0Q A;  2XV6 A;  1VQ5 P;  3EJE A;  2ROQ A;  1EIA A;  3GZM A;  2KOR A;  2GZE A;  1MZ8 A;  2KGE A;  1AYI A;  2PEO A;  2EIA A;  2JAZ A;  4IZ6 A;  2AFD A;  2GYK A;  3DS4 A;  2K0X A;  1VQ9 P;  2X2B A;  3B5I A;  1D1D A;  3DPH A;  5HGM A;  3CCR P;  1Q81 Q;  5HVC A;  2MY5 A;  1VKU A;  3HYB A;  2JU1 A;  3G21 A;  3DS3 A;  2EFJ A;  1YI2 P;  2N6Z A;  1HQB A;  1UNK A;  2JYG A;  2KGD A;  1IUQ A;  2JU2 A;  1AF8 A;  4U0E A;  5F2O A;  3RG6 C;  4COC A;  2FQ0 A;  3H0D A;  1RO0 A;  4XFY A;  3G1I A;  2LL8 A;  5EW5 E;  1CEI A;  1KLP A;  2ONT A;  1YJ9 P;  1VQM P;  2N98 A;  2L6E A;  2QEX P;  2LTE A;  1AUM A;  3GZL A;  3NTE A;  2CNR A;  4COP A;  1VQO P;  1M1K Q;  3P05 A;  4U0A A;  2KW2 A;  3CC4 P;  3M1M A;  3G26 A;  2KG6 A;  3CCV P;  1DV5 A;  5HGO A;  5KP6 B;  2MD9 A;  2GZG A;  2CQ8 A;  4XFX A;  3CC2 P;  1ZNV A;  1VQK P;  3CXC O;  1QVG O;  3LMO A;  2FHS C;  2CG5 B;  5EJD A;  1X3O A;  1YJN P;  1VQN P;  4GR6 A;  4U0B A;  2L22 A;  1EMV A;  1NJI Q;  2FAD A;  2NO8 A;  2AVA A;  3DS1 A;  1HY8 A;  1F80 D;  2CGQ A;  4BPF A;  3G29 A;  1VQ6 P;  5JPA A;  3GJN A;  4XRO A;  1M6E X;  2QA4 P;  2JQ4 A;  2L4B A;  2LKI A;  2K92 A;  3G1G A;  1IMP A;  5BS1 A;  5CZD B;  2PEK A;  3VRL C;  4IPY A;  2JB0 A;  1VHN A;  3GKL C;  4H2Y C;  2GDX A;  4F37 A;  4QKO A;  1A8O A;  2M8P A;  5BS2 A;  1VQL P;  3G71 P;  2LPK A;  1QVF O;  2OTJ P;  2KR5 A;  1VQ7 P;  5DCK A;  1Q82 Q;  2FQ2 A;  3B4Q A;  1YIT P;  2KOP A;  2MR8 A;  1M90 Q;  1BAJ A;  4U0D A;  3CPW O;  4U0F A;  2XZ1 C;  5I4T G;  2FAC A;  4PH1 A;  2K0D X;  2FVE A;  2OTL P;  3G0V A;  2BHV A;  2GDW A;  3G4S P;  1JJ2 O;  1QRJ A;  1DNY A;  5HV8 A;  1RO2 A;  2ERH A;  3NY7 B;  2MR7 A;  2LML A;  2MF4 A;  2KOS A;  2KG9 A;  2GZJ A;  3DTJ A;  3Q20 A;  1T8K A;  1GXG A;  2LF4 A;  4BPG A; 
#chains in the Genus database with same CATH homology
 2PEO A;  1K73 Q;  2EIA A;  3CMA P;  2XT1 A;  3G29 A;  1VQ6 P;  5JPA A;  3OW2 O;  3DS4 A;  4XRO A;  3CCS P;  1VQ9 P;  1M6E X;  4U0C A;  2QA4 P;  3CCE P;  3B5I A;  1D1D A;  3DPH A;  4PH0 A;  1YHQ P;  1RNI A;  3DS2 A;  3E2D A;  3HZQ A;  5HGM A;  3CCR P;  1Q81 Q;  5HGN A;  1VQ8 P;  3HYB A;  2Z44 A;  3G21 A;  3G1G A;  3DS3 A;  2EFJ A;  1YI2 P;  1KC8 Q;  5BS1 A;  2Z46 A;  2PEK A;  4XRQ A;  5HGL A;  1K9M Q;  3VRL C;  3CCU P;  1Q86 Q;  4IPY A;  4QNB A;  2JYG A;  2CWO A;  1IUQ A;  1A8O A;  2M8P A;  5BS2 A;  1VQL P;  3CCJ P;  4GR2 A;  2XXM A;  4U0E A;  2OAR A;  3G71 P;  2P9X A;  5F2O A;  3RG6 C;  4COC A;  1QVF O;  2OTJ P;  1K8A Q;  3H0D A;  1RO0 A;  4XFZ A;  4XFY A;  2PY8 A;  3G1I A;  1KQS O;  1EOQ A;  2PEM A;  1VQ7 P;  5DCK A;  1Q82 Q;  3CCM P;  2E1M A;  2ONT A;  2M8L A;  1YIT P;  1VQM P;  1YJ9 P;  2EG5 A;  3I55 P;  1M90 Q;  2L6E A;  1BAJ A;  2KOD A;  1VQP P;  1Q7Y Q;  3H4E A;  2QEX P;  3G6E P;  2JO0 A;  1AUM A;  4U0D A;  3CPW O;  3CME P;  3NTE A;  4U0F A;  2M8N A;  1W2B O;  4COP A;  5I4T G;  1VQO P;  1M1K Q;  3P05 A;  4PH1 A;  3MGE A;  4U0A A;  3CC4 P;  3CD6 P;  3M1M A;  3I56 P;  3G26 A;  2PEJ A;  1E6J P;  3CCQ P;  1S72 P;  3CC7 P;  2OTL P;  2PEI A;  3G0V A;  3H47 A;  3CCV P;  1ZMB A;  2BUO A;  1N8R Q;  1YJW P;  1M74 A;  2BHV A;  2JYL A;  3WBH A;  1YIJ P;  5HGO A;  3G4S P;  2DGY A;  3LRY A;  2Z45 A;  4XFX A;  1JJ2 O;  3CC2 P;  1QRJ A;  4M0I A;  3CXC O;  1VQK P;  2PEN A;  1QVG O;  3G28 A;  1VQ4 P;  2PEQ A;  1K30 A;  1KD1 Q;  3DS0 A;  1M6N A;  3DS5 A;  1YJN P;  4WYM A;  1RO2 A;  1VQ5 P;  2XV6 A;  5F2K A;  4GR6 A;  1VQN P;  4U0B A;  1NJI Q;  1EIA A;  1A43 A;  3DTJ A;  5F2N A;  3Q20 A;  3CCL P;  2LF4 A;  3DS1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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