3DS2A

Hiv-1 capsid c-terminal domain mutant (y169a)
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
84
structure length
84
Chain Sequence
TSILDIRQGPKEPFRDYVDRFAKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Human immunodeficiency virus 1
publication title Residues in the HIV-1 Capsid Assembly Inhibitor Binding Site Are Essential for Maintaining the Assembly-competent Quaternary Structure of the Capsid Protein.
pubmed doi rcsb
molecule keywords HIV-1 CAPSID PROTEIN
total genus 27
structure length 84
sequence length 84
chains with identical sequence B
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2008-07-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 3ds2A00
2M8LA 4XRQA 1A43A 2M8PA 2BUOA 3H4EA 2M8NA 4XFYA 3DS1A 3DS0A 2XT1A 3G28A 4U0FA 4U0CA 4XFXA 3G0VA 3DS4A 4XROA 1D1DA 4XFZA 1EIAA 4COCA 5HGNA 4PH0A 2JO0A 2ONTA 1QRJA 3DS3A 5DCKA 3H47A 3DS5A 2LF4A 4U0DA 3G26A 4COPA 4U0AA 4PH1A 3DTJA 3VRLC 5HGOA 3G29A 5I4TG 4M0IA 3P05A 3DPHA 2XXMA 5HGLA 1AUMA 3G1GA 2XV6A 5HGMA 1BAJA 3G21A 2KODA 3MGEA 4U0BA 5JPAA 3G1IA 3LRYA 4IPYA 1E6JP 2EIAA 2JYGA 3DS2A 1EOQA 4U0EA 4WYMA 2JYLA 3NTEA 4QNBA 2L6EA 1A8OA
chains in the Genus database with same CATH superfamily
2MD9A 2N6YA 2FVEA 4XFYA 1JJ2O 2E1MA 2PY8A 5HV8A 4M0IA 1VQPP 4PWVB 2OTLP 2GDYA 2VLPA 2N5HA 2GZGA 4U0EA 1L0HA 3GZLA 2NO8A 2MY5A 1ACPA 4BPFA 1E0HA 3CCVP 2LKIA 2L9FA 2K94A 2BUOA 1YJ9P 2DGYA 1HQBA 2L22A 1F80D 2ERHA 2KOPA 1Q81Q 1DNYA 2ROQA 1S72P 1N8RQ 3CCEP 3G1IA 4IPYA 2JAZA 1M74A 2KGEA 3EJEA 2FACA 2KW2A 2K5XA 2PEOA 1Q86Q 3H4EA 2MR8A 5HVCA 3CC7P 2K0XA 1AF8A 1M6EX 2FQ2A 2LIWA 5DCKA 3G26A 2MF4A 1K9MQ 2MR7A 4F37A 5BS1A 1BAJA 2FQ1A 2KODA 2VSQA 3DS2A 3G71P 1VQMP 2JU2A 5EW5E 4XRQA 1A43A 3G4SP 2CGQA 1VQ9P 2PEMA 1M6NA 1YIJP 2KOQA 3M1MA 4XROA 4COCA 2JU1A 1YJWP 3DS3A 1VQOP 1YHQP 3WBHA 2KOOA 2AVAA 4H2WC 3CD6P 1X3OA 2GZEA 3CMEP 3CC2P 4WYMA 3HYBA 2GZJA 2PEJA 2K0YA 2N50A 1YITP 2FAEA 2CQ8A 3DS1A 5KP8B 3CCLP 4PXHB 3RG2A 1QRJA 2DNWA 2OTJP 1KLPA 3GKLC 2KGCA 5HGMA 5JPAA 2K0DX 2JYGA 4BPGA 2LIUA 2LL8A 4UHPB 5F2NA 2KG8A 1ZNVA 1GPJA 3RG6C 3E2DA 5F2OA 5KP6B 1YI2P 4U0CA 1RO2A 2FVFA 1VQ8P 3H47A 3CCMP 2Z45A 4NEOA 1VKUA 1E6JP 1QVGO 3EJDA 1D1DA 1VQ4P 2M8PA 3U43A 4GR6A 1Z6MA 1NJIQ 5BS2A 1BXIA 1Q7YQ 2GZIA 2Z46A 7CEIA 1DV5A 1NQ4A 1AUMA 2KWLA 1L0IA 2JB0A 1KD1Q 3GJNA 3LRYA 1IMPA 1VQLP 2EG5A 2QEXP 2GDWA 3CCUP 1CEIA 1VQNP 2JBGA 3DPHA 3B4QA 5F2KA 2XZ1C 3G1GA 2LMLA 4DG9A 2X2BA 2KG9A 2LTEA 3I56P 3OW2O 2M8NA 2GYKA 3DS0A 5CZDB 2KORA 3DS5A 2QNWA 5HGOA 2XXMA 2N6ZA 2JQ4A 5HGLA 1M90Q 3H0DA 2JYLA 2L6EA 4QNBA 3P05A 2EFJA 5KP7B 2K2QA 2VLQA 2Z44A 2PEKA 1IMQA 3I55P 2N98A 1HY8A 3B5IA 3CCRP 1W2BO 2L4BA 1VQKP 2EIAA 1AYIA 1T8KA 4U0AA 3CCQP 1GXHA 2AFEA 1YJNP 3CC4P 2OARA 2PENA 3CXCO 2ONTA 3CCSP 3CE7A 1VQ7P 4PH1A 2XZ0D 1KQSO 2FVAA 3MGEA 3CCJP 4HKGA 4GR2A 1ZMBA 2K92A 2LOLA 2LPKA 4U0FA 3G0VA 4XFZA 4PH0A 2JO0A 4H2YC 2FQ0A 1VQ5P 2CG5B 2VLOA 4U0BA 3G21A 1UJZA 2MVVA 2L0QA 2M8LA 4QKOA 2K93A 1KC8Q 4MRTC 2MVUA 1UNKA 1M1KQ 2PEQA 2KG6A 3VRLC 5I4TG 1RNIA 2KR5A 1RO0A 2FADA 2PEIA 2QA4P 2CWOA 2AFDA 3NTEA 1IUQA 2CNRA 1OR5A 2WPTA 3Q20A 3G28A 3LMOA 2P9XA 4COPA 4H2XC 3DTJA 1EMVA 2EHTA 5EJDA 3HZQA 4BPHA 3G6EP 1FR2A 2EHSA 3EJBA 1Q82Q 3GZMA 3NY7B 4XFXA 2VLNA 3DS4A 2KOSA 2N5IA 1EIAA 2KGAA 4U0DA 2GDXA 4R0MA 3G29A 2KGDA 2GZFA 2XV6A 1VQ6P 2PNGA 1QVFO 2BHVA 4CA3A 1K8AQ 2XT1A 1K30A 5HGNA 3CPWO 2FHSC 1GXGA 2JGPA 2LF4A 1MZ8A 1K73Q 2AF8A 3CMAP 1EOQA 1VHNA 2M5RA 4IZ6A 1A8OA
chains in the Genus database with same CATH topology
2M8LA 2PEJA 1YITP 3I56P 3OW2O 2M8NA 4XFYA 1KC8Q 3DS1A 3DS0A 3CCLP 1JJ2O 2E1MA 1QRJA 2OTJP 2PY8A 3DS5A 1M1KQ 2PEQA 3VRLC 5HGOA 5I4TG 1RNIA 4M0IA 1VQPP 2OTLP 1RO0A 2XXMA 5HGLA 2PEIA 2QA4P 2CWOA 5HGMA 1M90Q 5JPAA 3H0DA 2JYGA 4U0EA 2JYLA 2L6EA 3NTEA 4QNBA 5F2NA 3P05A 2EFJA 1IUQA 3CCVP 3RG6C 2BUOA 2Z44A 2PEKA 3E2DA 5F2OA 3I55P 3Q20A 1YJ9P 3G28A 1YI2P 2DGYA 4U0CA 1RO2A 3B5IA 1VQ8P 3H47A 2P9XA 3CCRP 4COPA 1W2BO 3DTJA 3CCMP 2Z45A 1Q81Q 1S72P 1N8RQ 3CCEP 3HZQA 3G6EP 1VQKP 3G1IA 4IPYA 1E6JP 2EIAA 1QVGO 1D1DA 1M74A 4U0AA 1VQ4P 3CCQP 2PEOA 1Q82Q 2M8PA 1Q86Q 3H4EA 4XFXA 1YJNP 4GR6A 3DS4A 3CC4P 3CC7P 2OARA 1EIAA 2PENA 3CXCO 1M6EX 2ONTA 1NJIQ 5BS2A 5DCKA 3CCSP 1VQ7P 4U0DA 1Q7YQ 3G26A 2Z46A 4PH1A 3G29A 1K9MQ 1KQSO 5BS1A 1AUMA 2XV6A 1KD1Q 1BAJA 2KODA 3MGEA 3LRYA 3DS2A 3CCJP 1VQ6P 4GR2A 3G71P 1ZMBA 1VQMP 4XRQA 1A43A 1QVFO 2BHVA 3G4SP 1VQLP 2EG5A 2QEXP 1VQ9P 2PEMA 1K8AQ 1M6NA 1YIJP 4U0FA 2XT1A 3M1MA 3G0VA 4XROA 1K30A 4XFZA 4COCA 5HGNA 4PH0A 2JO0A 3CPWO 3CCUP 1YJWP 3DS3A 1VQOP 1YHQP 2LF4A 3WBHA 1VQ5P 1VQNP 3DPHA 1K73Q 3CD6P 5F2KA 3CMAP 3G1GA 4U0BA 3G21A 3CMEP 3CC2P 1EOQA 4WYMA 3HYBA 1A8OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2M8L A;  4XRQ A;  1A43 A;  2M8P A;  2BUO A;  3H4E A;  2M8N A;  4XFY A;  3DS1 A;  3DS0 A;  2XT1 A;  3G28 A;  4U0F A;  4U0C A;  4XFX A;  3G0V A;  3DS4 A;  4XRO A;  1D1D A;  4XFZ A;  1EIA A;  4COC A;  5HGN A;  4PH0 A;  2JO0 A;  2ONT A;  1QRJ A;  3DS3 A;  5DCK A;  3H47 A;  3DS5 A;  2LF4 A;  4U0D A;  3G26 A;  4COP A;  4U0A A;  4PH1 A;  3DTJ A;  3VRL C;  5HGO A;  3G29 A;  5I4T G;  4M0I A;  3P05 A;  3DPH A;  2XXM A;  5HGL A;  1AUM A;  3G1G A;  2XV6 A;  5HGM A;  1BAJ A;  3G21 A;  2KOD A;  3MGE A;  4U0B A;  5JPA A;  3G1I A;  3LRY A;  4IPY A;  1E6J P;  2EIA A;  2JYG A;  3DS2 A;  1EOQ A;  4U0E A;  4WYM A;  2JYL A;  3NTE A;  4QNB A;  2L6E A;  1A8O A; 
#chains in the Genus database with same CATH topology
 2MD9 A;  2N6Y A;  2FVE A;  4XFY A;  1JJ2 O;  2E1M A;  2PY8 A;  5HV8 A;  4M0I A;  1VQP P;  4PWV B;  2OTL P;  2GDY A;  2VLP A;  2N5H A;  2GZG A;  4U0E A;  1L0H A;  3GZL A;  2NO8 A;  2MY5 A;  1ACP A;  4BPF A;  1E0H A;  3CCV P;  2LKI A;  2L9F A;  2K94 A;  2BUO A;  1YJ9 P;  2DGY A;  1HQB A;  2L22 A;  1F80 D;  2ERH A;  2KOP A;  1Q81 Q;  1DNY A;  2ROQ A;  1S72 P;  1N8R Q;  3CCE P;  3G1I A;  4IPY A;  2JAZ A;  1M74 A;  2KGE A;  3EJE A;  2FAC A;  2KW2 A;  2K5X A;  2PEO A;  1Q86 Q;  3H4E A;  2MR8 A;  5HVC A;  3CC7 P;  2K0X A;  1AF8 A;  1M6E X;  2FQ2 A;  2LIW A;  5DCK A;  3G26 A;  2MF4 A;  1K9M Q;  2MR7 A;  4F37 A;  5BS1 A;  1BAJ A;  2FQ1 A;  2KOD A;  2VSQ A;  3DS2 A;  3G71 P;  1VQM P;  2JU2 A;  5EW5 E;  4XRQ A;  1A43 A;  3G4S P;  2CGQ A;  1VQ9 P;  2PEM A;  1M6N A;  1YIJ P;  2KOQ A;  3M1M A;  4XRO A;  4COC A;  2JU1 A;  1YJW P;  3DS3 A;  1VQO P;  1YHQ P;  3WBH A;  2KOO A;  2AVA A;  4H2W C;  3CD6 P;  1X3O A;  2GZE A;  3CME P;  3CC2 P;  4WYM A;  3HYB A;  2GZJ A;  2PEJ A;  2K0Y A;  2N50 A;  1YIT P;  2FAE A;  2CQ8 A;  3DS1 A;  5KP8 B;  3CCL P;  4PXH B;  3RG2 A;  1QRJ A;  2DNW A;  2OTJ P;  1KLP A;  3GKL C;  2KGC A;  5HGM A;  5JPA A;  2K0D X;  2JYG A;  4BPG A;  2LIU A;  2LL8 A;  4UHP B;  5F2N A;  2KG8 A;  1ZNV A;  1GPJ A;  3RG6 C;  3E2D A;  5F2O A;  5KP6 B;  1YI2 P;  4U0C A;  1RO2 A;  2FVF A;  1VQ8 P;  3H47 A;  3CCM P;  2Z45 A;  4NEO A;  1VKU A;  1E6J P;  1QVG O;  3EJD A;  1D1D A;  1VQ4 P;  2M8P A;  3U43 A;  4GR6 A;  1Z6M A;  1NJI Q;  5BS2 A;  1BXI A;  1Q7Y Q;  2GZI A;  2Z46 A;  7CEI A;  1DV5 A;  1NQ4 A;  1AUM A;  2KWL A;  1L0I A;  2JB0 A;  1KD1 Q;  3GJN A;  3LRY A;  1IMP A;  1VQL P;  2EG5 A;  2QEX P;  2GDW A;  3CCU P;  1CEI A;  1VQN P;  2JBG A;  3DPH A;  3B4Q A;  5F2K A;  2XZ1 C;  3G1G A;  2LML A;  4DG9 A;  2X2B A;  2KG9 A;  2LTE A;  3I56 P;  3OW2 O;  2M8N A;  2GYK A;  3DS0 A;  5CZD B;  2KOR A;  3DS5 A;  2QNW A;  5HGO A;  2XXM A;  2N6Z A;  2JQ4 A;  5HGL A;  1M90 Q;  3H0D A;  2JYL A;  2L6E A;  4QNB A;  3P05 A;  2EFJ A;  5KP7 B;  2K2Q A;  2VLQ A;  2Z44 A;  2PEK A;  1IMQ A;  3I55 P;  2N98 A;  1HY8 A;  3B5I A;  3CCR P;  1W2B O;  2L4B A;  1VQK P;  2EIA A;  1AYI A;  1T8K A;  4U0A A;  3CCQ P;  1GXH A;  2AFE A;  1YJN P;  3CC4 P;  2OAR A;  2PEN A;  3CXC O;  2ONT A;  3CCS P;  3CE7 A;  1VQ7 P;  4PH1 A;  2XZ0 D;  1KQS O;  2FVA A;  3MGE A;  3CCJ P;  4HKG A;  4GR2 A;  1ZMB A;  2K92 A;  2LOL A;  2LPK A;  4U0F A;  3G0V A;  4XFZ A;  4PH0 A;  2JO0 A;  4H2Y C;  2FQ0 A;  1VQ5 P;  2CG5 B;  2VLO A;  4U0B A;  3G21 A;  1UJZ A;  2MVV A;  2L0Q A;  2M8L A;  4QKO A;  2K93 A;  1KC8 Q;  4MRT C;  2MVU A;  1UNK A;  1M1K Q;  2PEQ A;  2KG6 A;  3VRL C;  5I4T G;  1RNI A;  2KR5 A;  1RO0 A;  2FAD A;  2PEI A;  2QA4 P;  2CWO A;  2AFD A;  3NTE A;  1IUQ A;  2CNR A;  1OR5 A;  2WPT A;  3Q20 A;  3G28 A;  3LMO A;  2P9X A;  4COP A;  4H2X C;  3DTJ A;  1EMV A;  2EHT A;  5EJD A;  3HZQ A;  4BPH A;  3G6E P;  1FR2 A;  2EHS A;  3EJB A;  1Q82 Q;  3GZM A;  3NY7 B;  4XFX A;  2VLN A;  3DS4 A;  2KOS A;  2N5I A;  1EIA A;  2KGA A;  4U0D A;  2GDX A;  4R0M A;  3G29 A;  2KGD A;  2GZF A;  2XV6 A;  1VQ6 P;  2PNG A;  1QVF O;  2BHV A;  4CA3 A;  1K8A Q;  2XT1 A;  1K30 A;  5HGN A;  3CPW O;  2FHS C;  1GXG A;  2JGP A;  2LF4 A;  1MZ8 A;  1K73 Q;  2AF8 A;  3CMA P;  1EOQ A;  1VHN A;  2M5R A;  4IZ6 A;  1A8O A; 
#chains in the Genus database with same CATH homology
 2M8L A;  2PEJ A;  1YIT P;  3I56 P;  3OW2 O;  2M8N A;  4XFY A;  1KC8 Q;  3DS1 A;  3DS0 A;  3CCL P;  1JJ2 O;  2E1M A;  1QRJ A;  2OTJ P;  2PY8 A;  3DS5 A;  1M1K Q;  2PEQ A;  3VRL C;  5HGO A;  5I4T G;  1RNI A;  4M0I A;  1VQP P;  2OTL P;  1RO0 A;  2XXM A;  5HGL A;  2PEI A;  2QA4 P;  2CWO A;  5HGM A;  1M90 Q;  5JPA A;  3H0D A;  2JYG A;  4U0E A;  2JYL A;  2L6E A;  3NTE A;  4QNB A;  5F2N A;  3P05 A;  2EFJ A;  1IUQ A;  3CCV P;  3RG6 C;  2BUO A;  2Z44 A;  2PEK A;  3E2D A;  5F2O A;  3I55 P;  3Q20 A;  1YJ9 P;  3G28 A;  1YI2 P;  2DGY A;  4U0C A;  1RO2 A;  3B5I A;  1VQ8 P;  3H47 A;  2P9X A;  3CCR P;  4COP A;  1W2B O;  3DTJ A;  3CCM P;  2Z45 A;  1Q81 Q;  1S72 P;  1N8R Q;  3CCE P;  3HZQ A;  3G6E P;  1VQK P;  3G1I A;  4IPY A;  1E6J P;  2EIA A;  1QVG O;  1D1D A;  1M74 A;  4U0A A;  1VQ4 P;  3CCQ P;  2PEO A;  1Q82 Q;  2M8P A;  1Q86 Q;  3H4E A;  4XFX A;  1YJN P;  4GR6 A;  3DS4 A;  3CC4 P;  3CC7 P;  2OAR A;  1EIA A;  2PEN A;  3CXC O;  1M6E X;  2ONT A;  1NJI Q;  5BS2 A;  5DCK A;  3CCS P;  1VQ7 P;  4U0D A;  1Q7Y Q;  3G26 A;  2Z46 A;  4PH1 A;  3G29 A;  1K9M Q;  1KQS O;  5BS1 A;  1AUM A;  2XV6 A;  1KD1 Q;  1BAJ A;  2KOD A;  3MGE A;  3LRY A;  3DS2 A;  3CCJ P;  1VQ6 P;  4GR2 A;  3G71 P;  1ZMB A;  1VQM P;  4XRQ A;  1A43 A;  1QVF O;  2BHV A;  3G4S P;  1VQL P;  2EG5 A;  2QEX P;  1VQ9 P;  2PEM A;  1K8A Q;  1M6N A;  1YIJ P;  4U0F A;  2XT1 A;  3M1M A;  3G0V A;  4XRO A;  1K30 A;  4XFZ A;  4COC A;  5HGN A;  4PH0 A;  2JO0 A;  3CPW O;  3CCU P;  1YJW P;  3DS3 A;  1VQO P;  1YHQ P;  2LF4 A;  3WBH A;  1VQ5 P;  1VQN P;  3DPH A;  1K73 Q;  3CD6 P;  5F2K A;  3CMA P;  3G1G A;  4U0B A;  3G21 A;  3CME P;  3CC2 P;  1EOQ A;  4WYM A;  3HYB A;  1A8O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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