1GXGA

Non-cognate protein-protein interactions: the nmr structure of the colicin e8 inhibitor protein im8 and its interaction with the dnase domain of colicin e9
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
85
structure length
85
Chain Sequence
MELKNSISDYTETEFKKIIEDIINCEGDEKKQDDNLEHFISVTEHPSGSDLIYYPEGNNDGSPEAVIKEIKEWRAANGKSGFKQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Inhibitor
source organism Escherichia coli
publication title Non-Cognate Protein-Protein Interaction: The NMR Structure of the Colicin E8 Inhibitor Protein Im8 and its Interaction with the DNase Domain of Colicin E9
rcsb
molecule keywords COLICIN E8 IMMUNITY PROTEIN
total genus 36
structure length 85
sequence length 85
ec nomenclature
pdb deposition date 2002-04-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1gxgA00
2VLQA 4QKOA 3GJNA 1UNKA 3GKLC 1FR2A 2GZJA 2JB0A 5EW5E 1EMVA 2K5XA 1IMQA 1MZ8A 1BXIA 1GXHA 7CEIA 2K0DX 2GZFA 2GZGA 2WPTA 2GZIA 1GXGA 3U43A 1AYIA 2NO8A 1ZNVA 1IMPA 1CEIA 2VLOA 2VLNA 2GYKA 2ERHA 2GZEA 4UHPB 4F37A 1UJZA 2JBGA 1E0HA 2VLPA 2JAZA
chains in the Genus database with same CATH superfamily
2CWOA 3P05A 2GZJA 1AF8A 3DPHA 1JJ2O 1VQMP 4R0MA 1VQLP 2CNRA 1YI2P 1ZNVA 2KG6A 4GR2A 1A8OA 2XT1A 1DNYA 1NJIQ 4F37A 5F2NA 1RNIA 2JAZA 1UNKA 2OARA 2XZ1C 2PEIA 1HY8A 5EJDA 3DS1A 2FAEA 2MD9A 1AUMA 1E6JP 1AYIA 1DV5A 1GPJA 5KP8B 3GZMA 3Q20A 1K8AQ 3DS4A 5I4TG 2JGPA 2VLQA 2M8LA 2PEOA 3NY7B 1Z6MA 2E1MA 4PH0A 2EIAA 4BPFA 2ROQA 4MRTC 1YIJP 2N5IA 2L0QA 2P9XA 2QNWA 2CG5B 2ONTA 5HGLA 3H0DA 4H2XC 2KW2A 2MVVA 5F2KA 1UJZA 3G28A 2FVFA 2EHTA 4BPHA 2FQ1A 2LIUA 2LL8A 1M6NA 2PENA 3G21A 4PWVB 1L0HA 2NO8A 3G4SP 1S72P 3DS3A 2PEQA 2JQ4A 5JPAA 2CQ8A 2FACA 2KGCA 2LMLA 2QA4P 2JO0A 2N6YA 1D1DA 3G0VA 2N98A 4XROA 3CMAP 2K5XA 1VQOP 1VQ8P 5HVCA 5HGOA 1VQ6P 1Q81Q 1YJ9P 4H2WC 3NTEA 1X3OA 3G71P 3DS2A 2AVAA 1K9MQ 1VQ7P 1KQSO 2VSQA 4DG9A 3LMOA 1VQ4P 2KODA 4UHPB 4PXHB 1VQ5P 2K0YA 1EMVA 1Q7YQ 1T8KA 5BS2A 2PY8A 2FVEA 2L6EA 1VQNP 1L0IA 2LIWA 4CA3A 3EJDA 1KD1Q 3G29A 2EG5A 3CCMP 3B4QA 1IMPA 2KOPA 2KGEA 2M5RA 4M0IA 2JBGA 3CCQP 2L4BA 4U0FA 3CCSP 2LPKA 2XXMA 4NEOA 2JB0A 2KGAA 1HQBA 4COCA 2N5HA 1ZMBA 2GDWA 3I56P 1EOQA 3I55P 3EJBA 3CCUP 2BHVA 2JU1A 1IUQA 2OTLP 2K2QA 4XFZA 2GDXA 2MY5A 5HGNA 1KC8Q 1ACPA 2KORA 2GZIA 2LKIA 4COPA 3HYBA 3B5IA 3DS5A 2GYKA 1YHQP 4IZ6A 2N6ZA 2PNGA 1EIAA 3CCVP 2Z45A 3RG2A 3VRLC 5F2OA 2LF4A 4HKGA 2WPTA 3G1IA 3H4EA 1RO0A 2K94A 3G6EP 1M90Q 1CEIA 2MR7A 3CPWO 1VQPP 2FADA 2XV6A 1M1KQ 3EJEA 4U0AA 2MVUA 3GKLC 2AFDA 1MZ8A 3CD6P 3M1MA 2AFEA 2N50A 1YJWP 2XZ0D 1VQKP 1M74A 2KR5A 3LRYA 3DTJA 4IPYA 2FVAA 3WBHA 3OW2O 3GZLA 2OTJP 2FQ0A 1N8RQ 1NQ4A 2GZFA 2EFJA 4WYMA 2KG9A 1VHNA 5DCKA 3CC2P 1F80D 2KOSA 3CXCO 2K93A 2EHSA 4XRQA 2Z44A 2DNWA 3DS0A 4QKOA 1FR2A 4U0CA 1BXIA 3CCJP 2K0DX 2KOQA 1M6EX 2KOOA 3MGEA 1RO2A 2PEJA 2K0XA 3HZQA 2M8NA 3RG6C 2L9FA 3H47A 3CC7P 2LOLA 2GZGA 4U0BA 5HGMA 3CCLP 1VKUA 4H2YC 1QRJA 2JYLA 2VLOA 2DGYA 4GR6A 4XFYA 2ERHA 2Z46A 2MF4A 5KP7B 2M8PA 4U0EA 2K92A 5EW5E 1IMQA 1K30A 4U0DA 1GXHA 5KP6B 1YITP 2MR8A 4BPGA 2AF8A 2JYGA 2GZEA 1QVGO 2KWLA 5CZDB 5BS1A 2VLPA 1QVFO 3GJNA 2KG8A 4XFXA 1A43A 7CEIA 3G1GA 1GXGA 3U43A 3CE7A 3CMEP 4PH1A 1K73Q 2FQ2A 3CCRP 4QNBA 1Q82Q 2PEMA 1E0HA 2PEKA 2BUOA 1Q86Q 2GDYA 1W2BO 1OR5A 3G26A 3CC4P 2QEXP 1BAJA 5HV8A 2JU2A 2X2BA 2L22A 2VLNA 1YJNP 1KLPA 3CCEP 2KGDA 2LTEA 2FHSC 1VQ9P 2CGQA 3E2DA
chains in the Genus database with same CATH topology
2VLQA 4QKOA 3GJNA 1UNKA 3GKLC 1FR2A 2GZJA 2JB0A 5EW5E 1EMVA 2K5XA 1IMQA 1MZ8A 1BXIA 1GXHA 7CEIA 2K0DX 2GZFA 2GZGA 2WPTA 2GZIA 1GXGA 3U43A 1AYIA 2NO8A 1ZNVA 1IMPA 1CEIA 2VLOA 2VLNA 2GYKA 2ERHA 2GZEA 4UHPB 4F37A 1UJZA 2JBGA 1E0HA 2VLPA 2JAZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VLQ A;  4QKO A;  3GJN A;  1UNK A;  3GKL C;  1FR2 A;  2GZJ A;  2JB0 A;  5EW5 E;  1EMV A;  2K5X A;  1IMQ A;  1MZ8 A;  1BXI A;  1GXH A;  7CEI A;  2K0D X;  2GZF A;  2GZG A;  2WPT A;  2GZI A;  1GXG A;  3U43 A;  1AYI A;  2NO8 A;  1ZNV A;  1IMP A;  1CEI A;  2VLO A;  2VLN A;  2GYK A;  2ERH A;  2GZE A;  4UHP B;  4F37 A;  1UJZ A;  2JBG A;  1E0H A;  2VLP A;  2JAZ A; 
#chains in the Genus database with same CATH topology
 2CWO A;  3P05 A;  2GZJ A;  1AF8 A;  3DPH A;  1JJ2 O;  1VQM P;  4R0M A;  1VQL P;  2CNR A;  1YI2 P;  1ZNV A;  2KG6 A;  4GR2 A;  1A8O A;  2XT1 A;  1DNY A;  1NJI Q;  4F37 A;  5F2N A;  1RNI A;  2JAZ A;  1UNK A;  2OAR A;  2XZ1 C;  2PEI A;  1HY8 A;  5EJD A;  3DS1 A;  2FAE A;  2MD9 A;  1AUM A;  1E6J P;  1AYI A;  1DV5 A;  1GPJ A;  5KP8 B;  3GZM A;  3Q20 A;  1K8A Q;  3DS4 A;  5I4T G;  2JGP A;  2VLQ A;  2M8L A;  2PEO A;  3NY7 B;  1Z6M A;  2E1M A;  4PH0 A;  2EIA A;  4BPF A;  2ROQ A;  4MRT C;  1YIJ P;  2N5I A;  2L0Q A;  2P9X A;  2QNW A;  2CG5 B;  2ONT A;  5HGL A;  3H0D A;  4H2X C;  2KW2 A;  2MVV A;  5F2K A;  1UJZ A;  3G28 A;  2FVF A;  2EHT A;  4BPH A;  2FQ1 A;  2LIU A;  2LL8 A;  1M6N A;  2PEN A;  3G21 A;  4PWV B;  1L0H A;  2NO8 A;  3G4S P;  1S72 P;  3DS3 A;  2PEQ A;  2JQ4 A;  5JPA A;  2CQ8 A;  2FAC A;  2KGC A;  2LML A;  2QA4 P;  2JO0 A;  2N6Y A;  1D1D A;  3G0V A;  2N98 A;  4XRO A;  3CMA P;  2K5X A;  1VQO P;  1VQ8 P;  5HVC A;  5HGO A;  1VQ6 P;  1Q81 Q;  1YJ9 P;  4H2W C;  3NTE A;  1X3O A;  3G71 P;  3DS2 A;  2AVA A;  1K9M Q;  1VQ7 P;  1KQS O;  2VSQ A;  4DG9 A;  3LMO A;  1VQ4 P;  2KOD A;  4UHP B;  4PXH B;  1VQ5 P;  2K0Y A;  1EMV A;  1Q7Y Q;  1T8K A;  5BS2 A;  2PY8 A;  2FVE A;  2L6E A;  1VQN P;  1L0I A;  2LIW A;  4CA3 A;  3EJD A;  1KD1 Q;  3G29 A;  2EG5 A;  3CCM P;  3B4Q A;  1IMP A;  2KOP A;  2KGE A;  2M5R A;  4M0I A;  2JBG A;  3CCQ P;  2L4B A;  4U0F A;  3CCS P;  2LPK A;  2XXM A;  4NEO A;  2JB0 A;  2KGA A;  1HQB A;  4COC A;  2N5H A;  1ZMB A;  2GDW A;  3I56 P;  1EOQ A;  3I55 P;  3EJB A;  3CCU P;  2BHV A;  2JU1 A;  1IUQ A;  2OTL P;  2K2Q A;  4XFZ A;  2GDX A;  2MY5 A;  5HGN A;  1KC8 Q;  1ACP A;  2KOR A;  2GZI A;  2LKI A;  4COP A;  3HYB A;  3B5I A;  3DS5 A;  2GYK A;  1YHQ P;  4IZ6 A;  2N6Z A;  2PNG A;  1EIA A;  3CCV P;  2Z45 A;  3RG2 A;  3VRL C;  5F2O A;  2LF4 A;  4HKG A;  2WPT A;  3G1I A;  3H4E A;  1RO0 A;  2K94 A;  3G6E P;  1M90 Q;  1CEI A;  2MR7 A;  3CPW O;  1VQP P;  2FAD A;  2XV6 A;  1M1K Q;  3EJE A;  4U0A A;  2MVU A;  3GKL C;  2AFD A;  1MZ8 A;  3CD6 P;  3M1M A;  2AFE A;  2N50 A;  1YJW P;  2XZ0 D;  1VQK P;  1M74 A;  2KR5 A;  3LRY A;  3DTJ A;  4IPY A;  2FVA A;  3WBH A;  3OW2 O;  3GZL A;  2OTJ P;  2FQ0 A;  1N8R Q;  1NQ4 A;  2GZF A;  2EFJ A;  4WYM A;  2KG9 A;  1VHN A;  5DCK A;  3CC2 P;  1F80 D;  2KOS A;  3CXC O;  2K93 A;  2EHS A;  4XRQ A;  2Z44 A;  2DNW A;  3DS0 A;  4QKO A;  1FR2 A;  4U0C A;  1BXI A;  3CCJ P;  2K0D X;  2KOQ A;  1M6E X;  2KOO A;  3MGE A;  1RO2 A;  2PEJ A;  2K0X A;  3HZQ A;  2M8N A;  3RG6 C;  2L9F A;  3H47 A;  3CC7 P;  2LOL A;  2GZG A;  4U0B A;  5HGM A;  3CCL P;  1VKU A;  4H2Y C;  1QRJ A;  2JYL A;  2VLO A;  2DGY A;  4GR6 A;  4XFY A;  2ERH A;  2Z46 A;  2MF4 A;  5KP7 B;  2M8P A;  4U0E A;  2K92 A;  5EW5 E;  1IMQ A;  1K30 A;  4U0D A;  1GXH A;  5KP6 B;  1YIT P;  2MR8 A;  4BPG A;  2AF8 A;  2JYG A;  2GZE A;  1QVG O;  2KWL A;  5CZD B;  5BS1 A;  2VLP A;  1QVF O;  3GJN A;  2KG8 A;  4XFX A;  1A43 A;  7CEI A;  3G1G A;  1GXG A;  3U43 A;  3CE7 A;  3CME P;  4PH1 A;  1K73 Q;  2FQ2 A;  3CCR P;  4QNB A;  1Q82 Q;  2PEM A;  1E0H A;  2PEK A;  2BUO A;  1Q86 Q;  2GDY A;  1W2B O;  1OR5 A;  3G26 A;  3CC4 P;  2QEX P;  1BAJ A;  5HV8 A;  2JU2 A;  2X2B A;  2L22 A;  2VLN A;  1YJN P;  1KLP A;  3CCE P;  2KGD A;  2LTE A;  2FHS C;  1VQ9 P;  2CGQ A;  3E2D A; 
#chains in the Genus database with same CATH homology
 2VLQ A;  4QKO A;  3GJN A;  1UNK A;  3GKL C;  1FR2 A;  2GZJ A;  2JB0 A;  5EW5 E;  1EMV A;  2K5X A;  1IMQ A;  1MZ8 A;  1BXI A;  1GXH A;  7CEI A;  2K0D X;  2GZF A;  2GZG A;  2WPT A;  2GZI A;  1GXG A;  3U43 A;  1AYI A;  2NO8 A;  1ZNV A;  1IMP A;  1CEI A;  2VLO A;  2VLN A;  2GYK A;  2ERH A;  2GZE A;  4UHP B;  4F37 A;  1UJZ A;  2JBG A;  1E0H A;  2VLP A;  2JAZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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