1GXGA

Non-cognate protein-protein interactions: the nmr structure of the colicin e8 inhibitor protein im8 and its interaction with the dnase domain of colicin e9
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
85
structure length
85
Chain Sequence
MELKNSISDYTETEFKKIIEDIINCEGDEKKQDDNLEHFISVTEHPSGSDLIYYPEGNNDGSPEAVIKEIKEWRAANGKSGFKQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords COLICIN E8 IMMUNITY PROTEIN
publication title Non-Cognate Protein-Protein Interaction: The NMR Structure of the Colicin E8 Inhibitor Protein Im8 and its Interaction with the DNase Domain of Colicin E9
rcsb
source organism Escherichia coli
molecule tags Inhibitor
total genus 36
structure length 85
sequence length 85
ec nomenclature
pdb deposition date 2002-04-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1gxgA00
1MZ8A 4UHPB 1IMQA 1ZNVA 2VLPA 2GYKA 1EMVA 4F37A 2JAZA 2GZEA 1GXGA 2K5XA 2GZIA 1UJZA 2JB0A 2GZGA 2VLNA 1BXIA 1FR2A 1UNKA 3GKLC 2ERHA 3U43A 7CEIA 2VLOA 2NO8A 1CEIA 5EW5E 4QKOA 2VLQA 2GZFA 1IMPA 3GJNA 2K0DX 1AYIA 2WPTA 1E0HA 2GZJA 2JBGA 1GXHA
chains in the Genus database with same CATH superfamily
1EIAA 1VQNP 1D1DA 4GR2A 2FADA 1Q81Q 1ZMBA 2N6ZA 5F2KA 4BPGA 3G71P 2FHSC 3I56P 2GZEA 2K5XA 4XFXA 1M90Q 1HY8A 1E6JP 2EHSA 3DS0A 5HVCA 2JU1A 1K8AQ 1YI2P 1BAJA 5CZDB 3CCVP 4U0DA 1DV5A 4HKGA 3GZLA 2P9XA 3LMOA 1UJZA 2KG6A 4BPHA 2EFJA 2QA4P 1VHNA 4BPFA 4QKOA 2L9FA 1VQ4P 4COPA 3DTJA 3GZMA 3G1IA 2OTLP 2LKIA 3DPHA 1IUQA 3M1MA 2KOOA 3HZQA 4QNBA 2L22A 3DS4A 3MGEA 5BS2A 5JPAA 3B4QA 2GDWA 4R0MA 2LIWA 4PH1A 3CCSP 2PEIA 2M5RA 1VQ7P 1Q82Q 4XROA 2ROQA 2FVFA 4GR6A 2QEXP 2JAZA 1S72P 2FVEA 3CXCO 2GDXA 3CCQP 5F2OA 3CC7P 2L4BA 4XRQA 3H0DA 1IMPA 3HYBA 2KW2A 2MY5A 4NEOA 2BHVA 1GXHA 1MZ8A 3CPWO 1ZNVA 2GYKA 3CCMP 2PEKA 1QRJA 2PY8A 2LF4A 4H2XC 3CC4P 3CCUP 2PEJA 7CEIA 4CA3A 1RO2A 2GDYA 2GZFA 1L0IA 1NQ4A 4U0BA 2MVVA 1YIJP 3CCRP 2JBGA 1KLPA 2AFDA 2CQ8A 1L0HA 2KODA 2KR5A 4F37A 5HGLA 2OARA 2KGCA 2MF4A 5BS1A 2KOQA 1FR2A 2ERHA 1OR5A 2VLOA 1W2BO 4DG9A 2K0XA 1VQKP 4PWVB 4WYMA 4U0CA 2K0DX 4U0FA 1NJIQ 3CCEP 1AYIA 2KG9A 2AFEA 2KORA 1VKUA 1IMQA 1VQ9P 2MD9A 3EJBA 2KOPA 1YJ9P 2LMLA 1VQ5P 2DGYA 2LIUA 4IZ6A 4MRTC 1CEIA 5EW5E 3LRYA 2KGEA 1Z6MA 2K2QA 3G28A 2MR7A 3CMAP 2X2BA 3DS5A 5DCKA 2LOLA 2GZIA 2JGPA 3H47A 2KWLA 5HGOA 3CE7A 1JJ2O 2K0YA 1Q7YQ 3G21A 4U0EA 2FAEA 1YHQP 1N8RQ 2FQ2A 2N6YA 2VLPA 1Q86Q 4M0IA 3CCJP 2JB0A 2GZGA 2KGAA 1BXIA 1K9MQ 2MVUA 3EJDA 4XFZA 5EJDA 2N5IA 4PXHB 5HV8A 3OW2O 2Z46A 1KC8Q 3G26A 4U0AA 3DS3A 1YITP 1DNYA 2XZ0D 4H2WC 1K73Q 2EHTA 1UNKA 3GKLC 2M8NA 1YJNP 2L0QA 2E1MA 2Z44A 5KP6B 2MR8A 1KD1Q 2ONTA 1HQBA 1GXGA 1VQLP 2LPKA 2LL8A 1GPJA 2WPTA 3DS2A 2GZJA 2N50A 2JQ4A 1EMVA 1QVFO 1QVGO 1KQSO 1VQ6P 1RO0A 2JU2A 2XXMA 2M8PA 2N5HA 2KOSA 1ACPA 1AUMA 2KG8A 2CWOA 2PEQA 3GJNA 3G1GA 3CD6P 3DS1A 5KP8B 2KGDA 4UHPB 1VQOP 5HGNA 3G29A 3I55P 2K94A 2VLNA 2JO0A 3U43A 2JYLA 1M74A 2FQ1A 2OTJP 4H2YC 4PH0A 2PEOA 1YJWP 1F80D 1T8KA 2EIAA 2L6EA 3VRLC 3CC2P 3G0VA 2FVAA 5HGMA 3WBHA 2FACA 1M1KQ 3P05A 3G6EP 2DNWA 2CG5B 2PNGA 3Q20A 1VQMP 3NTEA 2VLQA 2AVAA 2XT1A 3CCLP 1EOQA 2Z45A 1M6NA 2QNWA 1K30A 2CNRA 2CGQA 3E2DA 2EG5A 2PENA 2BUOA 2NO8A 1E0HA 2N98A 3EJEA 5F2NA 1RNIA 1VQPP 4COCA 3G4SP 3RG2A 3NY7B 5KP7B 2FQ0A 2K93A 1VQ8P 3CMEP 1AF8A 2XZ1C 2XV6A 2VSQA 2K92A 1A8OA 1X3OA 2JYGA 2LTEA 4XFYA 5I4TG 2AF8A 3H4EA 4IPYA 1M6EX 2M8LA 3B5IA 2PEMA 1A43A 3RG6C
chains in the Genus database with same CATH topology
1MZ8A 4UHPB 1IMQA 1ZNVA 2VLPA 2GYKA 1EMVA 4F37A 2JAZA 2GZEA 1GXGA 2K5XA 2GZIA 1UJZA 2JB0A 2GZGA 2VLNA 1BXIA 1FR2A 1UNKA 3GKLC 2ERHA 3U43A 7CEIA 2VLOA 2NO8A 1CEIA 5EW5E 4QKOA 2VLQA 2GZFA 1IMPA 3GJNA 2K0DX 1AYIA 2WPTA 1E0HA 2GZJA 2JBGA 1GXHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MZ8 A;  4UHP B;  1IMQ A;  1ZNV A;  2VLP A;  2GYK A;  1EMV A;  4F37 A;  2JAZ A;  2GZE A;  1GXG A;  2K5X A;  2GZI A;  1UJZ A;  2JB0 A;  2GZG A;  2VLN A;  1BXI A;  1FR2 A;  1UNK A;  3GKL C;  2ERH A;  3U43 A;  7CEI A;  2VLO A;  2NO8 A;  1CEI A;  5EW5 E;  4QKO A;  2VLQ A;  2GZF A;  1IMP A;  3GJN A;  2K0D X;  1AYI A;  2WPT A;  1E0H A;  2GZJ A;  2JBG A;  1GXH A; 
#chains in the Genus database with same CATH topology
 1EIA A;  1VQN P;  1D1D A;  4GR2 A;  2FAD A;  1Q81 Q;  1ZMB A;  2N6Z A;  5F2K A;  4BPG A;  3G71 P;  2FHS C;  3I56 P;  2GZE A;  2K5X A;  4XFX A;  1M90 Q;  1HY8 A;  1E6J P;  2EHS A;  3DS0 A;  5HVC A;  2JU1 A;  1K8A Q;  1YI2 P;  1BAJ A;  5CZD B;  3CCV P;  4U0D A;  1DV5 A;  4HKG A;  3GZL A;  2P9X A;  3LMO A;  1UJZ A;  2KG6 A;  4BPH A;  2EFJ A;  2QA4 P;  1VHN A;  4BPF A;  4QKO A;  2L9F A;  1VQ4 P;  4COP A;  3DTJ A;  3GZM A;  3G1I A;  2OTL P;  2LKI A;  3DPH A;  1IUQ A;  3M1M A;  2KOO A;  3HZQ A;  4QNB A;  2L22 A;  3DS4 A;  3MGE A;  5BS2 A;  5JPA A;  3B4Q A;  2GDW A;  4R0M A;  2LIW A;  4PH1 A;  3CCS P;  2PEI A;  2M5R A;  1VQ7 P;  1Q82 Q;  4XRO A;  2ROQ A;  2FVF A;  4GR6 A;  2QEX P;  2JAZ A;  1S72 P;  2FVE A;  3CXC O;  2GDX A;  3CCQ P;  5F2O A;  3CC7 P;  2L4B A;  4XRQ A;  3H0D A;  1IMP A;  3HYB A;  2KW2 A;  2MY5 A;  4NEO A;  2BHV A;  1GXH A;  1MZ8 A;  3CPW O;  1ZNV A;  2GYK A;  3CCM P;  2PEK A;  1QRJ A;  2PY8 A;  2LF4 A;  4H2X C;  3CC4 P;  3CCU P;  2PEJ A;  7CEI A;  4CA3 A;  1RO2 A;  2GDY A;  2GZF A;  1L0I A;  1NQ4 A;  4U0B A;  2MVV A;  1YIJ P;  3CCR P;  2JBG A;  1KLP A;  2AFD A;  2CQ8 A;  1L0H A;  2KOD A;  2KR5 A;  4F37 A;  5HGL A;  2OAR A;  2KGC A;  2MF4 A;  5BS1 A;  2KOQ A;  1FR2 A;  2ERH A;  1OR5 A;  2VLO A;  1W2B O;  4DG9 A;  2K0X A;  1VQK P;  4PWV B;  4WYM A;  4U0C A;  2K0D X;  4U0F A;  1NJI Q;  3CCE P;  1AYI A;  2KG9 A;  2AFE A;  2KOR A;  1VKU A;  1IMQ A;  1VQ9 P;  2MD9 A;  3EJB A;  2KOP A;  1YJ9 P;  2LML A;  1VQ5 P;  2DGY A;  2LIU A;  4IZ6 A;  4MRT C;  1CEI A;  5EW5 E;  3LRY A;  2KGE A;  1Z6M A;  2K2Q A;  3G28 A;  2MR7 A;  3CMA P;  2X2B A;  3DS5 A;  5DCK A;  2LOL A;  2GZI A;  2JGP A;  3H47 A;  2KWL A;  5HGO A;  3CE7 A;  1JJ2 O;  2K0Y A;  1Q7Y Q;  3G21 A;  4U0E A;  2FAE A;  1YHQ P;  1N8R Q;  2FQ2 A;  2N6Y A;  2VLP A;  1Q86 Q;  4M0I A;  3CCJ P;  2JB0 A;  2GZG A;  2KGA A;  1BXI A;  1K9M Q;  2MVU A;  3EJD A;  4XFZ A;  5EJD A;  2N5I A;  4PXH B;  5HV8 A;  3OW2 O;  2Z46 A;  1KC8 Q;  3G26 A;  4U0A A;  3DS3 A;  1YIT P;  1DNY A;  2XZ0 D;  4H2W C;  1K73 Q;  2EHT A;  1UNK A;  3GKL C;  2M8N A;  1YJN P;  2L0Q A;  2E1M A;  2Z44 A;  5KP6 B;  2MR8 A;  1KD1 Q;  2ONT A;  1HQB A;  1GXG A;  1VQL P;  2LPK A;  2LL8 A;  1GPJ A;  2WPT A;  3DS2 A;  2GZJ A;  2N50 A;  2JQ4 A;  1EMV A;  1QVF O;  1QVG O;  1KQS O;  1VQ6 P;  1RO0 A;  2JU2 A;  2XXM A;  2M8P A;  2N5H A;  2KOS A;  1ACP A;  1AUM A;  2KG8 A;  2CWO A;  2PEQ A;  3GJN A;  3G1G A;  3CD6 P;  3DS1 A;  5KP8 B;  2KGD A;  4UHP B;  1VQO P;  5HGN A;  3G29 A;  3I55 P;  2K94 A;  2VLN A;  2JO0 A;  3U43 A;  2JYL A;  1M74 A;  2FQ1 A;  2OTJ P;  4H2Y C;  4PH0 A;  2PEO A;  1YJW P;  1F80 D;  1T8K A;  2EIA A;  2L6E A;  3VRL C;  3CC2 P;  3G0V A;  2FVA A;  5HGM A;  3WBH A;  2FAC A;  1M1K Q;  3P05 A;  3G6E P;  2DNW A;  2CG5 B;  2PNG A;  3Q20 A;  1VQM P;  3NTE A;  2VLQ A;  2AVA A;  2XT1 A;  3CCL P;  1EOQ A;  2Z45 A;  1M6N A;  2QNW A;  1K30 A;  2CNR A;  2CGQ A;  3E2D A;  2EG5 A;  2PEN A;  2BUO A;  2NO8 A;  1E0H A;  2N98 A;  3EJE A;  5F2N A;  1RNI A;  1VQP P;  4COC A;  3G4S P;  3RG2 A;  3NY7 B;  5KP7 B;  2FQ0 A;  2K93 A;  1VQ8 P;  3CME P;  1AF8 A;  2XZ1 C;  2XV6 A;  2VSQ A;  2K92 A;  1A8O A;  1X3O A;  2JYG A;  2LTE A;  4XFY A;  5I4T G;  2AF8 A;  3H4E A;  4IPY A;  1M6E X;  2M8L A;  3B5I A;  2PEM A;  1A43 A;  3RG6 C; 
#chains in the Genus database with same CATH homology
 1MZ8 A;  4UHP B;  1IMQ A;  1ZNV A;  2VLP A;  2GYK A;  1EMV A;  4F37 A;  2JAZ A;  2GZE A;  1GXG A;  2K5X A;  2GZI A;  1UJZ A;  2JB0 A;  2GZG A;  2VLN A;  1BXI A;  1FR2 A;  1UNK A;  3GKL C;  2ERH A;  3U43 A;  7CEI A;  2VLO A;  2NO8 A;  1CEI A;  5EW5 E;  4QKO A;  2VLQ A;  2GZF A;  1IMP A;  3GJN A;  2K0D X;  1AYI A;  2WPT A;  1E0H A;  2GZJ A;  2JBG A;  1GXH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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