1GXGA

Non-cognate protein-protein interactions: the nmr structure of the colicin e8 inhibitor protein im8 and its interaction with the dnase domain of colicin e9
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
85
structure length
85
Chain Sequence
b'MELKNSISDYTETEFKKIIEDIINCEGDEKKQDDNLEHFISVTEHPSGSDLIYYPEGNNDGSPEAVIKEIKEWRAANGKSGFKQG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords COLICIN E8 IMMUNITY PROTEIN
publication title Non-Cognate Protein-Protein Interaction: The NMR Structure of the Colicin E8 Inhibitor Protein Im8 and its Interaction with the DNase Domain of Colicin E9
rcsb
source organism Escherichia coli
molecule tags Inhibitor
total genus 36
structure length 85
sequence length 85
ec nomenclature
pdb deposition date 2002-04-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1gxgA00
1GXGA 2GZGA 2GZIA 2K5XA 2VLQA 1ZNVA 2GYKA 4QKOA 1BXIA 1E0HA 2VLNA 3GJNA 2JB0A 1AYIA 1EMVA 3U43A 2GZEA 4UHPB 2JAZA 1CEIA 1UNKA 3GKLC 5EW5E 2NO8A 2ERHA 4F37A 2JBGA 2GZFA 2GZJA 1GXHA 1UJZA 1IMPA 2VLOA 1FR2A 1MZ8A 7CEIA 2K0DX 1IMQA 2WPTA 2VLPA
chains in the Genus database with same CATH superfamily
2L22A 2EIAA 3CC2P 2GYKA 2MR7A 1ZMBA 2L6EA 2BUOA 2LIWA 2LL8A 1W2BO 2M5RA 1QRJA 2PEJA 1X3OA 3EJBA 2XZ1C 2FVFA 2Z44A 1Q82Q 2FQ1A 7CEIA 2K0XA 4UHPB 2N6ZA 2LOLA 1AF8A 2KGAA 1RO2A 5KP7B 3LRYA 2AF8A 2K92A 2X2BA 3DS3A 4WYMA 1Q86Q 3CCLP 2JBGA 2PEIA 3G6EP 2BHVA 2CG5B 2DGYA 3CD6P 3H4EA 1E0HA 4QNBA 2N6YA 5JPAA 3B4QA 2LTEA 2FQ2A 3NY7B 2GDYA 1VKUA 2KG8A 1L0IA 1A43A 1GXGA 4R0MA 2QNWA 1D1DA 4XFYA 1BAJA 2KOPA 1Q7YQ 1ACPA 3CMAP 1QVFO 3CCEP 2KODA 2MR8A 3P05A 1HY8A 4XFZA 2K94A 2N98A 4IZ6A 1VQKP 2KR5A 2XZ0D 3HYBA 1AUMA 2JU2A 5HGLA 1E6JP 1M74A 4HKGA 3I55P 2KGDA 4PH1A 2XT1A 1OR5A 3G4SP 3G1IA 5F2NA 1EOQA 1GPJA 1VQ4P 2N50A 2KOOA 3G1GA 3RG6C 5HGMA 2E1MA 3CXCO 2GZJA 2VLOA 1KLPA 2JYGA 1FR2A 1M1KQ 2FADA 1NJIQ 4H2WC 3CCVP 2AFEA 2OTJP 1K9MQ 2FAEA 2GZEA 3CC7P 4NEOA 1YHQP 2FVEA 2NO8A 1T8KA 5DCKA 2LIUA 2Z46A 3MGEA 4CA3A 1YJ9P 4U0EA 4U0DA 4BPGA 5HGNA 5KP6B 2QA4P 2KORA 1IMQA 2KOQA 3DS5A 2LMLA 4PWVB 1BXIA 3CCMP 3GJNA 4COPA 2JB0A 1AYIA 2K2QA 4GR2A 1M6NA 5F2KA 3GKLC 2N5IA 4MRTC 2CNRA 2GZFA 4XROA 5HV8A 1F80D 1VQOP 1VQ6P 1IUQA 1ZNVA 3G28A 3U43A 5KP8B 1YIJP 1N8RQ 1KC8Q 1VQ7P 3CCSP 4F37A 1RNIA 3CCJP 2LF4A 2FHSC 2K5XA 2PEKA 3WBHA 1Z6MA 2FVAA 2JGPA 2LKIA 1JJ2O 1M90Q 1M6EX 3G29A 2M8LA 2PEMA 4H2XC 5HGOA 1UNKA 3DS0A 3NTEA 2CQ8A 1K8AQ 2K93A 1MZ8A 3CCRP 2K0DX 1DNYA 2L9FA 1K30A 2KGEA 2PEQA 2VLPA 3M1MA 2KOSA 2KW2A 4U0FA 4IPYA 1K73Q 3Q20A 3EJDA 3DS4A 2XV6A 2KG6A 4GR6A 2L4BA 1S72P 3DPHA 2ERHA 3EJEA 5I4TG 1RO0A 5F2OA 2QEXP 2MD9A 3H47A 2VLQA 3CC4P 2PENA 2MVVA 2ONTA 4U0AA 4BPHA 3G71P 2EFJA 1CEIA 1VHNA 3CMEP 1HQBA 5EJDA 1YITP 2OARA 2OTLP 1GXHA 2XXMA 1KD1Q 2GZIA 2L0QA 3CE7A 5CZDB 1VQMP 1Q81Q 4U0BA 2VLNA 3GZLA 3G0VA 4XRQA 2CGQA 2AFDA 3VRLC 2MF4A 4DG9A 5BS2A 2P9XA 1VQNP 2GZGA 2MVUA 1KQSO 4H2YC 2VSQA 1YJNP 5BS1A 2JQ4A 3I56P 3G21A 2EG5A 1EMVA 1QVGO 3RG2A 2AVAA 3DS2A 2CWOA 2K0YA 4M0IA 2FACA 2KWLA 3H0DA 2Z45A 2N5HA 4XFXA 2PY8A 2JO0A 2LPKA 4COCA 3DS1A 4QKOA 4U0CA 1YJWP 1EIAA 2ROQA 5EW5E 2JYLA 1L0HA 3E2DA 2KGCA 3CCQP 2MY5A 1IMPA 5HVCA 3B5IA 3G26A 1NQ4A 1VQ9P 1VQ5P 3OW2O 3GZMA 2KG9A 3CPWO 1YI2P 2JU1A 2EHTA 3LMOA 2GDWA 1VQ8P 1UJZA 3HZQA 2EHSA 2FQ0A 2GDXA 2DNWA 2PNGA 4PH0A 3CCUP 1VQPP 4PXHB 2JAZA 2M8NA 1DV5A 4BPFA 2PEOA 2M8PA 1A8OA 3DTJA 2WPTA 1VQLP
chains in the Genus database with same CATH topology
1GXGA 2GZGA 2GZIA 2K5XA 2VLQA 1ZNVA 2GYKA 4QKOA 1BXIA 1E0HA 2VLNA 3GJNA 2JB0A 1AYIA 1EMVA 3U43A 2GZEA 4UHPB 2JAZA 1CEIA 1UNKA 3GKLC 5EW5E 2NO8A 2ERHA 4F37A 2JBGA 2GZFA 2GZJA 1GXHA 1UJZA 1IMPA 2VLOA 1FR2A 1MZ8A 7CEIA 2K0DX 1IMQA 2WPTA 2VLPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GXG A;  2GZG A;  2GZI A;  2K5X A;  2VLQ A;  1ZNV A;  2GYK A;  4QKO A;  1BXI A;  1E0H A;  2VLN A;  3GJN A;  2JB0 A;  1AYI A;  1EMV A;  3U43 A;  2GZE A;  4UHP B;  2JAZ A;  1CEI A;  1UNK A;  3GKL C;  5EW5 E;  2NO8 A;  2ERH A;  4F37 A;  2JBG A;  2GZF A;  2GZJ A;  1GXH A;  1UJZ A;  1IMP A;  2VLO A;  1FR2 A;  1MZ8 A;  7CEI A;  2K0D X;  1IMQ A;  2WPT A;  2VLP A; 
#chains in the Genus database with same CATH topology
 2L22 A;  2EIA A;  3CC2 P;  2GYK A;  2MR7 A;  1ZMB A;  2L6E A;  2BUO A;  2LIW A;  2LL8 A;  1W2B O;  2M5R A;  1QRJ A;  2PEJ A;  1X3O A;  3EJB A;  2XZ1 C;  2FVF A;  2Z44 A;  1Q82 Q;  2FQ1 A;  7CEI A;  2K0X A;  4UHP B;  2N6Z A;  2LOL A;  1AF8 A;  2KGA A;  1RO2 A;  5KP7 B;  3LRY A;  2AF8 A;  2K92 A;  2X2B A;  3DS3 A;  4WYM A;  1Q86 Q;  3CCL P;  2JBG A;  2PEI A;  3G6E P;  2BHV A;  2CG5 B;  2DGY A;  3CD6 P;  3H4E A;  1E0H A;  4QNB A;  2N6Y A;  5JPA A;  3B4Q A;  2LTE A;  2FQ2 A;  3NY7 B;  2GDY A;  1VKU A;  2KG8 A;  1L0I A;  1A43 A;  1GXG A;  4R0M A;  2QNW A;  1D1D A;  4XFY A;  1BAJ A;  2KOP A;  1Q7Y Q;  1ACP A;  3CMA P;  1QVF O;  3CCE P;  2KOD A;  2MR8 A;  3P05 A;  1HY8 A;  4XFZ A;  2K94 A;  2N98 A;  4IZ6 A;  1VQK P;  2KR5 A;  2XZ0 D;  3HYB A;  1AUM A;  2JU2 A;  5HGL A;  1E6J P;  1M74 A;  4HKG A;  3I55 P;  2KGD A;  4PH1 A;  2XT1 A;  1OR5 A;  3G4S P;  3G1I A;  5F2N A;  1EOQ A;  1GPJ A;  1VQ4 P;  2N50 A;  2KOO A;  3G1G A;  3RG6 C;  5HGM A;  2E1M A;  3CXC O;  2GZJ A;  2VLO A;  1KLP A;  2JYG A;  1FR2 A;  1M1K Q;  2FAD A;  1NJI Q;  4H2W C;  3CCV P;  2AFE A;  2OTJ P;  1K9M Q;  2FAE A;  2GZE A;  3CC7 P;  4NEO A;  1YHQ P;  2FVE A;  2NO8 A;  1T8K A;  5DCK A;  2LIU A;  2Z46 A;  3MGE A;  4CA3 A;  1YJ9 P;  4U0E A;  4U0D A;  4BPG A;  5HGN A;  5KP6 B;  2QA4 P;  2KOR A;  1IMQ A;  2KOQ A;  3DS5 A;  2LML A;  4PWV B;  1BXI A;  3CCM P;  3GJN A;  4COP A;  2JB0 A;  1AYI A;  2K2Q A;  4GR2 A;  1M6N A;  5F2K A;  3GKL C;  2N5I A;  4MRT C;  2CNR A;  2GZF A;  4XRO A;  5HV8 A;  1F80 D;  1VQO P;  1VQ6 P;  1IUQ A;  1ZNV A;  3G28 A;  3U43 A;  5KP8 B;  1YIJ P;  1N8R Q;  1KC8 Q;  1VQ7 P;  3CCS P;  4F37 A;  1RNI A;  3CCJ P;  2LF4 A;  2FHS C;  2K5X A;  2PEK A;  3WBH A;  1Z6M A;  2FVA A;  2JGP A;  2LKI A;  1JJ2 O;  1M90 Q;  1M6E X;  3G29 A;  2M8L A;  2PEM A;  4H2X C;  5HGO A;  1UNK A;  3DS0 A;  3NTE A;  2CQ8 A;  1K8A Q;  2K93 A;  1MZ8 A;  3CCR P;  2K0D X;  1DNY A;  2L9F A;  1K30 A;  2KGE A;  2PEQ A;  2VLP A;  3M1M A;  2KOS A;  2KW2 A;  4U0F A;  4IPY A;  1K73 Q;  3Q20 A;  3EJD A;  3DS4 A;  2XV6 A;  2KG6 A;  4GR6 A;  2L4B A;  1S72 P;  3DPH A;  2ERH A;  3EJE A;  5I4T G;  1RO0 A;  5F2O A;  2QEX P;  2MD9 A;  3H47 A;  2VLQ A;  3CC4 P;  2PEN A;  2MVV A;  2ONT A;  4U0A A;  4BPH A;  3G71 P;  2EFJ A;  1CEI A;  1VHN A;  3CME P;  1HQB A;  5EJD A;  1YIT P;  2OAR A;  2OTL P;  1GXH A;  2XXM A;  1KD1 Q;  2GZI A;  2L0Q A;  3CE7 A;  5CZD B;  1VQM P;  1Q81 Q;  4U0B A;  2VLN A;  3GZL A;  3G0V A;  4XRQ A;  2CGQ A;  2AFD A;  3VRL C;  2MF4 A;  4DG9 A;  5BS2 A;  2P9X A;  1VQN P;  2GZG A;  2MVU A;  1KQS O;  4H2Y C;  2VSQ A;  1YJN P;  5BS1 A;  2JQ4 A;  3I56 P;  3G21 A;  2EG5 A;  1EMV A;  1QVG O;  3RG2 A;  2AVA A;  3DS2 A;  2CWO A;  2K0Y A;  4M0I A;  2FAC A;  2KWL A;  3H0D A;  2Z45 A;  2N5H A;  4XFX A;  2PY8 A;  2JO0 A;  2LPK A;  4COC A;  3DS1 A;  4QKO A;  4U0C A;  1YJW P;  1EIA A;  2ROQ A;  5EW5 E;  2JYL A;  1L0H A;  3E2D A;  2KGC A;  3CCQ P;  2MY5 A;  1IMP A;  5HVC A;  3B5I A;  3G26 A;  1NQ4 A;  1VQ9 P;  1VQ5 P;  3OW2 O;  3GZM A;  2KG9 A;  3CPW O;  1YI2 P;  2JU1 A;  2EHT A;  3LMO A;  2GDW A;  1VQ8 P;  1UJZ A;  3HZQ A;  2EHS A;  2FQ0 A;  2GDX A;  2DNW A;  2PNG A;  4PH0 A;  3CCU P;  1VQP P;  4PXH B;  2JAZ A;  2M8N A;  1DV5 A;  4BPF A;  2PEO A;  2M8P A;  1A8O A;  3DTJ A;  2WPT A;  1VQL P; 
#chains in the Genus database with same CATH homology
 1GXG A;  2GZG A;  2GZI A;  2K5X A;  2VLQ A;  1ZNV A;  2GYK A;  4QKO A;  1BXI A;  1E0H A;  2VLN A;  3GJN A;  2JB0 A;  1AYI A;  1EMV A;  3U43 A;  2GZE A;  4UHP B;  2JAZ A;  1CEI A;  1UNK A;  3GKL C;  5EW5 E;  2NO8 A;  2ERH A;  4F37 A;  2JBG A;  2GZF A;  2GZJ A;  1GXH A;  1UJZ A;  1IMP A;  2VLO A;  1FR2 A;  1MZ8 A;  7CEI A;  2K0D X;  1IMQ A;  2WPT A;  2VLP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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