2PY8A

Rbcx
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
120
structure length
120
Chain Sequence
QTKHIAQATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKELVLRILAVREDIAESVLDFLPGMTRNSLAESNIAHRRHLLERLTRTVAEVDNFPS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
source organism Synechocystis sp. pcc 6803
publication title Structure of the RuBisCO chaperone RbcX from Synechocystis sp. PCC6803.
pubmed doi rcsb
molecule keywords Hypothetical protein rbcX
total genus 50
structure length 120
sequence length 120
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02341 RcbX RbcX protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.210 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2py8A00
2PEKA 3HYBA 4GR6A 2Z45A 3Q20A 4GR2A 5BS1A 2PENA 2PEOA 2PY8A 2PEMA 2Z44A 5BS2A 2PEQA 2PEJA 3RG6C 2Z46A 2PEIA
chains in the Genus database with same CATH superfamily
2PEKA 2KGCA 2QEXP 3DPHA 4CA3A 1K9MQ 2DNWA 2LIUA 1VQ9P 1E6JP 3OW2O 7CEIA 5HGLA 4BPGA 3P05A 1A8OA 2PENA 2NO8A 1T8KA 5JPAA 2GDXA 4U0FA 3U43A 1AUMA 2FVAA 5HVCA 2CWOA 2LF4A 2XV6A 2MR7A 2N98A 1KLPA 2CG5B 4COPA 3I55P 3G6EP 2LOLA 2MVUA 2FQ1A 5CZDB 3HZQA 1GPJA 1NJIQ 1M6EX 2E1MA 1YJNP 2JQ4A 2JGPA 2LL8A 2GDYA 2BUOA 1Q81Q 1VHNA 4GR6A 3WBHA 1YITP 3NY7B 2GZEA 4F37A 2MF4A 3G1IA 3MGEA 1OR5A 1QRJA 1N8RQ 1YJ9P 2FAEA 1AYIA 1DV5A 2PEJA 3EJBA 5KP7B 3G0VA 1E0HA 2VLPA 2PY8A 4DG9A 1VQ8P 1M1KQ 2KWLA 1QVGO 2JYLA 1VQKP 2KR5A 4XFXA 4NEOA 2PEIA 2GZFA 2K92A 2EHSA 2K0XA 3G29A 2L6EA 1DNYA 2N6ZA 3GZMA 3CC7P 3LRYA 2GZJA 2GYKA 2KOOA 2VLOA 1M6NA 2CQ8A 2KGAA 2LPKA 2FQ0A 2MR8A 2FQ2A 2LKIA 2KOQA 1KD1Q 2XT1A 1YI2P 2AVAA 5EW5E 2KG6A 3GZLA 2JU2A 2K94A 2K2QA 2L9FA 1M90Q 5BS2A 1W2BO 3H0DA 4IZ6A 3CCJP 2KODA 2AF8A 2JB0A 1RO0A 2BHVA 3RG2A 4XROA 2N5HA 3M1MA 1S72P 3CPWO 3CXCO 3HYBA 5BS1A 2KG9A 3G71P 3DTJA 1K8AQ 1D1DA 4PH1A 5F2KA 1NQ4A 5EJDA 2XZ0D 4UHPB 3CCUP 5KP6B 2N50A 2M5RA 1UJZA 1YJWP 2K5XA 2ONTA 1ZNVA 2EIAA 3DS5A 2PEMA 4H2WC 4XFZA 4U0CA 3I56P 2JU1A 3CMAP 3NTEA 1YHQP 2KORA 2LIWA 2L4BA 2JO0A 3G21A 3G26A 2L22A 1AF8A 2GDWA 5DCKA 1VQLP 3CD6P 3G1GA 3DS2A 2Z45A 1QVFO 2P9XA 3B5IA 5I4TG 2PEOA 2KGEA 1Q7YQ 2ROQA 5HGNA 2JYGA 2LMLA 1IMQA 1EOQA 2GZIA 2QA4P 2KW2A 2MVVA 4QKOA 2K93A 1Q82Q 3CC4P 1VQOP 4BPFA 1IMPA 1GXHA 1GXGA 2X2BA 2M8NA 2PEQA 3E2DA 2VLNA 2XZ1C 3H4EA 4M0IA 3CCLP 1EMVA 2EFJA 1K73Q 4QNBA 2VSQA 3H47A 1VQNP 2EG5A 3DS4A 1VQ7P 2MY5A 1VQ4P 3CCRP 2WPTA 1VKUA 3RG6C 5HGMA 4XRQA 1L0HA 3GKLC 4PXHB 2FVEA 2FVFA 1YIJP 5F2OA 1JJ2O 3EJEA 2JAZA 2K0DX 1KQSO 2N6YA 1EIAA 3CCEP 4MRTC 2K0YA 3GJNA 5HGOA 1VQMP 1Z6MA 1VQ5P 5F2NA 3DS0A 3CMEP 4H2XC 3Q20A 1Q86Q 3CC2P 2M8LA 2M8PA 2KGDA 2VLQA 1L0IA 4WYMA 2OTJP 4HKGA 1IUQA 1A43A 1KC8Q 5KP8B 1BXIA 4XFYA 2QNWA 2XXMA 3LMOA 3CCQP 2PNGA 2AFEA 3G4SP 3VRLC 1BAJA 4U0EA 1VQPP 2KG8A 4U0DA 3EJDA 2L0QA 2OARA 2ERHA 2Z46A 1RO2A 1MZ8A 2CNRA 4U0BA 2CGQA 2KOPA 1HQBA 1CEIA 2FACA 1ZMBA 3CCMP 3DS1A 2DGYA 1FR2A 4H2YC 4BPHA 5HV8A 4PWVB 2KOSA 4COCA 1K30A 4PH0A 2GZGA 3CCVP 4GR2A 2JBGA 2Z44A 4IPYA 3CCSP 2EHTA 4U0AA 1UNKA 4R0MA 2FADA 3DS3A 3CE7A 1HY8A 1VQ6P 1F80D 1M74A 1RNIA 2LTEA 1ACPA 3B4QA 1X3OA 2AFDA 2OTLP 2MD9A 3G28A 2N5IA 2FHSC
chains in the Genus database with same CATH topology
2PEKA 3B5IA 5I4TG 4WYMA 2OTJP 2QEXP 2PEOA 3DPHA 1IUQA 1Q7YQ 1A43A 1K9MQ 1KD1Q 2XT1A 2JYGA 5HGNA 1YI2P 1KC8Q 1VQ9P 1EOQA 2QA4P 1E6JP 3OW2O 4XFYA 5HGLA 3P05A 1A8OA 2PENA 2XXMA 5JPAA 3CCQP 4U0FA 1Q82Q 1AUMA 3CC4P 3G4SP 1M90Q 2CWOA 2LF4A 2XV6A 1VQOP 5BS2A 1W2BO 3VRLC 3H0DA 3CCJP 2KODA 4COPA 1RO0A 1BAJA 2BHVA 4U0EA 3I55P 3G6EP 4XROA 1VQPP 2M8NA 3M1MA 3HZQA 4U0DA 1S72P 3CPWO 1NJIQ 1M6EX 2OARA 2PEQA 3E2DA 2Z46A 3CXCO 2E1MA 1RO2A 3HYBA 1YJNP 4U0BA 3H4EA 4M0IA 5BS1A 3CCLP 2EFJA 1K73Q 4QNBA 3H47A 1VQNP 2EG5A 3DS4A 3G71P 1VQ7P 3DTJA 1ZMBA 2BUOA 1Q81Q 1K8AQ 3CCMP 4GR6A 1VQ4P 3CCRP 3WBHA 3DS1A 1YITP 1D1DA 4PH1A 2DGYA 5F2KA 3G1IA 3RG6C 5HGMA 4XRQA 3MGEA 3CCUP 1QRJA 1N8RQ 4COCA 1YJ9P 1K30A 1YJWP 2PEJA 4PH0A 5F2OA 1YIJP 2ONTA 3G0VA 1JJ2O 3CCVP 4GR2A 2PY8A 2Z44A 4IPYA 3CCSP 1KQSO 1EIAA 4U0AA 1VQ8P 2EIAA 3DS5A 1M1KQ 3CCEP 1QVGO 2JYLA 3DS3A 1VQKP 2PEMA 4XFZA 4XFXA 5HGOA 1VQMP 4U0CA 3I56P 2PEIA 1VQ6P 3CMAP 1VQ5P 3NTEA 5F2NA 1YHQP 3DS0A 1M74A 1RNIA 2JO0A 3G21A 3G26A 3G29A 2L6EA 3CMEP 2OTLP 3G28A 3Q20A 1Q86Q 3CC2P 3CC7P 5DCKA 3LRYA 1VQLP 3CD6P 3G1GA 2M8LA 2M8PA 3DS2A 2Z45A 1QVFO 2P9XA 1M6NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PEK A;  3HYB A;  4GR6 A;  2Z45 A;  3Q20 A;  4GR2 A;  5BS1 A;  2PEN A;  2PEO A;  2PY8 A;  2PEM A;  2Z44 A;  5BS2 A;  2PEQ A;  2PEJ A;  3RG6 C;  2Z46 A;  2PEI A; 
#chains in the Genus database with same CATH topology
 2PEK A;  2KGC A;  2QEX P;  3DPH A;  4CA3 A;  1K9M Q;  2DNW A;  2LIU A;  1VQ9 P;  1E6J P;  3OW2 O;  7CEI A;  5HGL A;  4BPG A;  3P05 A;  1A8O A;  2PEN A;  2NO8 A;  1T8K A;  5JPA A;  2GDX A;  4U0F A;  3U43 A;  1AUM A;  2FVA A;  5HVC A;  2CWO A;  2LF4 A;  2XV6 A;  2MR7 A;  2N98 A;  1KLP A;  2CG5 B;  4COP A;  3I55 P;  3G6E P;  2LOL A;  2MVU A;  2FQ1 A;  5CZD B;  3HZQ A;  1GPJ A;  1NJI Q;  1M6E X;  2E1M A;  1YJN P;  2JQ4 A;  2JGP A;  2LL8 A;  2GDY A;  2BUO A;  1Q81 Q;  1VHN A;  4GR6 A;  3WBH A;  1YIT P;  3NY7 B;  2GZE A;  4F37 A;  2MF4 A;  3G1I A;  3MGE A;  1OR5 A;  1QRJ A;  1N8R Q;  1YJ9 P;  2FAE A;  1AYI A;  1DV5 A;  2PEJ A;  3EJB A;  5KP7 B;  3G0V A;  1E0H A;  2VLP A;  2PY8 A;  4DG9 A;  1VQ8 P;  1M1K Q;  2KWL A;  1QVG O;  2JYL A;  1VQK P;  2KR5 A;  4XFX A;  4NEO A;  2PEI A;  2GZF A;  2K92 A;  2EHS A;  2K0X A;  3G29 A;  2L6E A;  1DNY A;  2N6Z A;  3GZM A;  3CC7 P;  3LRY A;  2GZJ A;  2GYK A;  2KOO A;  2VLO A;  1M6N A;  2CQ8 A;  2KGA A;  2LPK A;  2FQ0 A;  2MR8 A;  2FQ2 A;  2LKI A;  2KOQ A;  1KD1 Q;  2XT1 A;  1YI2 P;  2AVA A;  5EW5 E;  2KG6 A;  3GZL A;  2JU2 A;  2K94 A;  2K2Q A;  2L9F A;  1M90 Q;  5BS2 A;  1W2B O;  3H0D A;  4IZ6 A;  3CCJ P;  2KOD A;  2AF8 A;  2JB0 A;  1RO0 A;  2BHV A;  3RG2 A;  4XRO A;  2N5H A;  3M1M A;  1S72 P;  3CPW O;  3CXC O;  3HYB A;  5BS1 A;  2KG9 A;  3G71 P;  3DTJ A;  1K8A Q;  1D1D A;  4PH1 A;  5F2K A;  1NQ4 A;  5EJD A;  2XZ0 D;  4UHP B;  3CCU P;  5KP6 B;  2N50 A;  2M5R A;  1UJZ A;  1YJW P;  2K5X A;  2ONT A;  1ZNV A;  2EIA A;  3DS5 A;  2PEM A;  4H2W C;  4XFZ A;  4U0C A;  3I56 P;  2JU1 A;  3CMA P;  3NTE A;  1YHQ P;  2KOR A;  2LIW A;  2L4B A;  2JO0 A;  3G21 A;  3G26 A;  2L22 A;  1AF8 A;  2GDW A;  5DCK A;  1VQL P;  3CD6 P;  3G1G A;  3DS2 A;  2Z45 A;  1QVF O;  2P9X A;  3B5I A;  5I4T G;  2PEO A;  2KGE A;  1Q7Y Q;  2ROQ A;  5HGN A;  2JYG A;  2LML A;  1IMQ A;  1EOQ A;  2GZI A;  2QA4 P;  2KW2 A;  2MVV A;  4QKO A;  2K93 A;  1Q82 Q;  3CC4 P;  1VQO P;  4BPF A;  1IMP A;  1GXH A;  1GXG A;  2X2B A;  2M8N A;  2PEQ A;  3E2D A;  2VLN A;  2XZ1 C;  3H4E A;  4M0I A;  3CCL P;  1EMV A;  2EFJ A;  1K73 Q;  4QNB A;  2VSQ A;  3H47 A;  1VQN P;  2EG5 A;  3DS4 A;  1VQ7 P;  2MY5 A;  1VQ4 P;  3CCR P;  2WPT A;  1VKU A;  3RG6 C;  5HGM A;  4XRQ A;  1L0H A;  3GKL C;  4PXH B;  2FVE A;  2FVF A;  1YIJ P;  5F2O A;  1JJ2 O;  3EJE A;  2JAZ A;  2K0D X;  1KQS O;  2N6Y A;  1EIA A;  3CCE P;  4MRT C;  2K0Y A;  3GJN A;  5HGO A;  1VQM P;  1Z6M A;  1VQ5 P;  5F2N A;  3DS0 A;  3CME P;  4H2X C;  3Q20 A;  1Q86 Q;  3CC2 P;  2M8L A;  2M8P A;  2KGD A;  2VLQ A;  1L0I A;  4WYM A;  2OTJ P;  4HKG A;  1IUQ A;  1A43 A;  1KC8 Q;  5KP8 B;  1BXI A;  4XFY A;  2QNW A;  2XXM A;  3LMO A;  3CCQ P;  2PNG A;  2AFE A;  3G4S P;  3VRL C;  1BAJ A;  4U0E A;  1VQP P;  2KG8 A;  4U0D A;  3EJD A;  2L0Q A;  2OAR A;  2ERH A;  2Z46 A;  1RO2 A;  1MZ8 A;  2CNR A;  4U0B A;  2CGQ A;  2KOP A;  1HQB A;  1CEI A;  2FAC A;  1ZMB A;  3CCM P;  3DS1 A;  2DGY A;  1FR2 A;  4H2Y C;  4BPH A;  5HV8 A;  4PWV B;  2KOS A;  4COC A;  1K30 A;  4PH0 A;  2GZG A;  3CCV P;  4GR2 A;  2JBG A;  2Z44 A;  4IPY A;  3CCS P;  2EHT A;  4U0A A;  1UNK A;  4R0M A;  2FAD A;  3DS3 A;  3CE7 A;  1HY8 A;  1VQ6 P;  1F80 D;  1M74 A;  1RNI A;  2LTE A;  1ACP A;  3B4Q A;  1X3O A;  2AFD A;  2OTL P;  2MD9 A;  3G28 A;  2N5I A;  2FHS C; 
#chains in the Genus database with same CATH homology
 2PEK A;  3B5I A;  5I4T G;  4WYM A;  2OTJ P;  2QEX P;  2PEO A;  3DPH A;  1IUQ A;  1Q7Y Q;  1A43 A;  1K9M Q;  1KD1 Q;  2XT1 A;  2JYG A;  5HGN A;  1YI2 P;  1KC8 Q;  1VQ9 P;  1EOQ A;  2QA4 P;  1E6J P;  3OW2 O;  4XFY A;  5HGL A;  3P05 A;  1A8O A;  2PEN A;  2XXM A;  5JPA A;  3CCQ P;  4U0F A;  1Q82 Q;  1AUM A;  3CC4 P;  3G4S P;  1M90 Q;  2CWO A;  2LF4 A;  2XV6 A;  1VQO P;  5BS2 A;  1W2B O;  3VRL C;  3H0D A;  3CCJ P;  2KOD A;  4COP A;  1RO0 A;  1BAJ A;  2BHV A;  4U0E A;  3I55 P;  3G6E P;  4XRO A;  1VQP P;  2M8N A;  3M1M A;  3HZQ A;  4U0D A;  1S72 P;  3CPW O;  1NJI Q;  1M6E X;  2OAR A;  2PEQ A;  3E2D A;  2Z46 A;  3CXC O;  2E1M A;  1RO2 A;  3HYB A;  1YJN P;  4U0B A;  3H4E A;  4M0I A;  5BS1 A;  3CCL P;  2EFJ A;  1K73 Q;  4QNB A;  3H47 A;  1VQN P;  2EG5 A;  3DS4 A;  3G71 P;  1VQ7 P;  3DTJ A;  1ZMB A;  2BUO A;  1Q81 Q;  1K8A Q;  3CCM P;  4GR6 A;  1VQ4 P;  3CCR P;  3WBH A;  3DS1 A;  1YIT P;  1D1D A;  4PH1 A;  2DGY A;  5F2K A;  3G1I A;  3RG6 C;  5HGM A;  4XRQ A;  3MGE A;  3CCU P;  1QRJ A;  1N8R Q;  4COC A;  1YJ9 P;  1K30 A;  1YJW P;  2PEJ A;  4PH0 A;  5F2O A;  1YIJ P;  2ONT A;  3G0V A;  1JJ2 O;  3CCV P;  4GR2 A;  2PY8 A;  2Z44 A;  4IPY A;  3CCS P;  1KQS O;  1EIA A;  4U0A A;  1VQ8 P;  2EIA A;  3DS5 A;  1M1K Q;  3CCE P;  1QVG O;  2JYL A;  3DS3 A;  1VQK P;  2PEM A;  4XFZ A;  4XFX A;  5HGO A;  1VQM P;  4U0C A;  3I56 P;  2PEI A;  1VQ6 P;  3CMA P;  1VQ5 P;  3NTE A;  5F2N A;  1YHQ P;  3DS0 A;  1M74 A;  1RNI A;  2JO0 A;  3G21 A;  3G26 A;  3G29 A;  2L6E A;  3CME P;  2OTL P;  3G28 A;  3Q20 A;  1Q86 Q;  3CC2 P;  3CC7 P;  5DCK A;  3LRY A;  1VQL P;  3CD6 P;  3G1G A;  2M8L A;  2M8P A;  3DS2 A;  2Z45 A;  1QVF O;  2P9X A;  1M6N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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